FFCP PHASE2:Hg19::chr15:34260755..34260766,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:1133 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:1954 |TSSclass...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1133 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=1954 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 06:13, 17 September 2015
| Short description: | p3@CHRM5 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_CHRM5_5end |
| Coexpression cluster: | C738_locus_spinal_globus_thalamus_medulla_hippocampus_medial |
| Association with transcript: | -154bp_to_ENST00000560035_5end |
| EntrezGene: | CHRM5 |
| HGNC: | 1954 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@CHRM5 |
|---|
0
1
2
3
4
5
6
7
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neural tube | 7.11e-26 | 56 |
| neural rod | 7.11e-26 | 56 |
| future spinal cord | 7.11e-26 | 56 |
| neural keel | 7.11e-26 | 56 |
| brainstem | 9.87e-24 | 6 |
| regional part of nervous system | 4.56e-22 | 53 |
| regional part of brain | 4.56e-22 | 53 |
| pons | 1.29e-21 | 3 |
| central nervous system | 2.67e-21 | 81 |
| brain | 6.84e-21 | 68 |
Showing 1 to 10 of 68 entries
