FFCP PHASE1:Hg19::chr1:28286476..28286549,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55113 | |EntrezGene=55113 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=25508 | |HGNC=25508 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H6D3 | |UniProt=Q9H6D3 | ||
|association_with_transcript=0bp_to_NM_018053,uc001bph.1_5end | |association_with_transcript=0bp_to_NM_018053,uc001bph.1_5end | ||
|cluster_id=chr1:28286476..28286549,+ | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_1_at_XKR8_5end | |description=CAGE_peak_1_at_XKR8_5end | ||
|id=chr1:28286476..28286549,+ | |id=chr1:28286476..28286549,+ | ||
|ontology_enrichment_celltype=CL:0000048!7.10e-15!430;CL:0000034!2.36e-14!444;CL:0000723!1.30e-13!436;CL:0002371!2.82e-13!591;CL:0000055!1.64e-10!180;CL:0000144!2.19e-10!625;CL:0000222!4.55e-09!119;CL:0000183!1.31e-08!59;CL:0002320!3.47e-08!365;CL:0000393!1.04e-07!60;CL:0000211!1.04e-07!60;CL:0002078!3.34e-07!44;CL:0000115!6.03e-07!35;CL:0000134!6.54e-07!358;CL:0000680!6.82e-07!57;CL:0000056!6.82e-07!57;CL:0000355!6.82e-07!57 | |ontology_enrichment_celltype=CL:0000048!7.10e-15!430;CL:0000034!2.36e-14!444;CL:0000723!1.30e-13!436;CL:0002371!2.82e-13!591;CL:0000055!1.64e-10!180;CL:0000144!2.19e-10!625;CL:0000222!4.55e-09!119;CL:0000183!1.31e-08!59;CL:0002320!3.47e-08!365;CL:0000393!1.04e-07!60;CL:0000211!1.04e-07!60;CL:0002078!3.34e-07!44;CL:0000115!6.03e-07!35;CL:0000134!6.54e-07!358;CL:0000680!6.82e-07!57;CL:0000056!6.82e-07!57;CL:0000355!6.82e-07!57 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.98e-15,427;CL:0000034,7.34e-15,441;CL:0000723,4.15e-14,433;CL:0000222,3.55e-09,121;CL:0002320,9.18e-09,361;CL:0002078,1.45e-07,45;CL:0000134,1.96e-07,354;CL:0000393,2.26e-07,61;CL:0000211,2.26e-07,61;CL:0000115,2.51e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!5.30e-13!216;UBERON:0004535!1.22e-12!110;UBERON:0001009!1.25e-11!113;UBERON:0002049!6.07e-08!79;UBERON:0007798!6.07e-08!79;UBERON:0004872!7.24e-08!84;UBERON:0000055!1.17e-07!69;UBERON:0003914!2.22e-07!118;UBERON:0004290!2.63e-07!70;UBERON:0000914!3.97e-07!83;UBERON:0002329!3.97e-07!83;UBERON:0003077!3.97e-07!83;UBERON:0003059!3.97e-07!83;UBERON:0007282!3.97e-07!83;UBERON:0009618!3.97e-07!83;UBERON:0007285!3.97e-07!83;UBERON:0002384!6.14e-07!375;UBERON:0005256!9.39e-07!143 | |ontology_enrichment_uberon=UBERON:0003081!5.30e-13!216;UBERON:0004535!1.22e-12!110;UBERON:0001009!1.25e-11!113;UBERON:0002049!6.07e-08!79;UBERON:0007798!6.07e-08!79;UBERON:0004872!7.24e-08!84;UBERON:0000055!1.17e-07!69;UBERON:0003914!2.22e-07!118;UBERON:0004290!2.63e-07!70;UBERON:0000914!3.97e-07!83;UBERON:0002329!3.97e-07!83;UBERON:0003077!3.97e-07!83;UBERON:0003059!3.97e-07!83;UBERON:0007282!3.97e-07!83;UBERON:0009618!3.97e-07!83;UBERON:0007285!3.97e-07!83;UBERON:0002384!6.14e-07!375;UBERON:0005256!9.39e-07!143 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,7.47e-13,203;UBERON:0004535,8.95e-13,109;UBERON:0000926,5.73e-12,315;UBERON:0004120,5.73e-12,315;UBERON:0006603,5.73e-12,315;UBERON:0001009,9.50e-12,112;UBERON:0007503,3.12e-09,78;UBERON:0002049,4.68e-08,78;UBERON:0007798,4.68e-08,78;UBERON:0004872,5.68e-08,83;UBERON:0000055,8.83e-08,68;UBERON:0003914,1.50e-07,117;UBERON:0002384,1.84e-07,371;UBERON:0002329,5.19e-07,71;UBERON:0003059,5.19e-07,71;UBERON:0007282,5.19e-07,71;UBERON:0004290,5.19e-07,71;UBERON:0009618,5.19e-07,71;UBERON:0007524,5.78e-07,73;UBERON:0002204,6.52e-07,167;UBERON:0003077,9.39e-07,72;UBERON:0007285,9.39e-07,72 | |||
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| ||
|short_description=p1@XKR8 | |short_description=p1@XKR8 | ||
}} | }} |
Latest revision as of 09:22, 17 September 2015
Short description: | p1@XKR8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_XKR8_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_NM_018053, uc001bph.1_5end |
EntrezGene: | XKR8 |
HGNC: | 25508 |
UniProt: | Q9H6D3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.98e-15 | 427 |
stem cell | 7.34e-15 | 441 |
somatic stem cell | 4.15e-14 | 433 |
mesodermal cell | 3.55e-09 | 121 |
connective tissue cell | 9.18e-09 | 361 |
meso-epithelial cell | 1.45e-07 | 45 |
mesenchymal cell | 1.96e-07 | 354 |
electrically responsive cell | 2.26e-07 | 61 |
electrically active cell | 2.26e-07 | 61 |
endothelial cell | 2.51e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 7.47e-13 | 203 |
cardiovascular system | 8.95e-13 | 109 |
mesoderm | 5.73e-12 | 315 |
mesoderm-derived structure | 5.73e-12 | 315 |
presumptive mesoderm | 5.73e-12 | 315 |
circulatory system | 9.50e-12 | 112 |
epithelial vesicle | 3.12e-09 | 78 |
vasculature | 4.68e-08 | 78 |
vascular system | 4.68e-08 | 78 |
splanchnic layer of lateral plate mesoderm | 5.68e-08 | 83 |
vessel | 8.83e-08 | 68 |
epithelial tube | 1.50e-07 | 117 |
connective tissue | 1.84e-07 | 371 |
somite | 5.19e-07 | 71 |
presomitic mesoderm | 5.19e-07 | 71 |
presumptive segmental plate | 5.19e-07 | 71 |
dermomyotome | 5.19e-07 | 71 |
trunk paraxial mesoderm | 5.19e-07 | 71 |
dense mesenchyme tissue | 5.78e-07 | 73 |
musculoskeletal system | 6.52e-07 | 167 |
paraxial mesoderm | 9.39e-07 | 72 |
presumptive paraxial mesoderm | 9.39e-07 | 72 |