FFCP PHASE1:Hg19::chr20:6034506..6034518,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=164312 | |EntrezGene=164312 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16208 | |HGNC=16208 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WUT4,Q6ZMD1 | |UniProt=Q8WUT4,Q6ZMD1 | ||
|association_with_transcript=175bp_to_NM_152611,uc002wmo.2,uc002wmp.2_5end | |||
|cluster_id=chr20:6034506..6034518,- | |||
|coexpression_cluster_id=C463 | |||
|description=CAGE_peak_4_at_LRRN4_5end | |||
|id=chr20:6034506..6034518,- | |||
|ontology_enrichment_celltype=CL:1000507!2.21e-31!12;CL:1000494!2.21e-31!12;CL:1000449!3.82e-23!16;CL:1000497!2.13e-20!18;CL:0002518!2.13e-20!18;CL:0002681!6.68e-13!13;CL:0002584!6.68e-13!13;CL:0000077!3.61e-12!19;CL:0000650!9.10e-08!3;CL:1000618!9.10e-08!3;CL:1001318!9.10e-08!3;CL:0002173!9.10e-08!3;CL:1000500!9.10e-08!3;CL:0000239!2.49e-07!3;CL:1000615!2.49e-07!3;CL:0002306!2.49e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000077;7.56e-24;19!CL:0000650;2.88e-20;2!CL:1000500;2.88e-20;2!CL:1000618;2.88e-20;2!CL:1001318;2.88e-20;2!CL:0002173;2.88e-20;2!CL:1000507;1.62e-15;10!CL:1000494;1.62e-15;10!CL:0000669;1.30e-10;4!CL:1000449;2.04e-10;15!CL:1000497;3.27e-09;17!CL:0002518;3.27e-09;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,6.94e-24,19;CL:0000650,3.02e-20,2;CL:1000500,3.02e-20,2;CL:1000618,3.02e-20,2;CL:1001318,3.02e-20,2;CL:0002173,3.02e-20,2;CL:1000507,1.65e-15,10;CL:1000494,1.65e-15,10;CL:0000669,1.33e-10,4;CL:1000449,2.07e-10,15;CL:1000497,3.31e-09,17;CL:0002518,3.31e-09,17;CL:0000213,2.35e-07,58;CL:0000215,2.35e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.82e-21!14;DOID:120!4.11e-16!27;DOID:193!7.16e-15!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;6.41e-17;14!DOID:120;3.14e-12;27!DOID:193;2.34e-11;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.41e-17,14;DOID:120,3.31e-12,27;DOID:193,2.45e-11,29 | |||
|ontology_enrichment_uberon=UBERON:0009773!2.21e-31!12;UBERON:0001231!2.21e-31!12;UBERON:0004810!2.21e-31!12;UBERON:0004211!3.82e-23!16;UBERON:0001285!3.82e-23!16;UBERON:0007684!3.82e-23!16;UBERON:0003220!3.82e-23!16;UBERON:0004208!3.82e-23!16;UBERON:0006555!1.09e-21!17;UBERON:0005103!1.09e-21!17;UBERON:0000083!1.09e-21!17;UBERON:0009201!1.09e-21!17;UBERON:0004819!1.09e-21!17;UBERON:0006553!1.09e-21!17;UBERON:0003074!1.09e-21!17;UBERON:0003060!1.09e-21!17;UBERON:0000080!2.13e-20!18;UBERON:0002120!2.13e-20!18;UBERON:0004875!2.13e-20!18;UBERON:0005721!2.13e-20!18;UBERON:0005754!2.13e-20!18;UBERON:0007297!2.13e-20!18;UBERON:0002113!1.63e-19!27;UBERON:0003918!1.63e-19!27;UBERON:0005095!1.63e-19!27;UBERON:0007687!1.63e-19!27;UBERON:0004876!3.37e-18!20;UBERON:0003887!2.95e-17!21;UBERON:0000489!4.01e-16!32;UBERON:0005172!3.61e-14!55;UBERON:0005173!3.61e-14!55;UBERON:0001851!5.49e-14!16;UBERON:0003064!1.02e-13!37;UBERON:0000058!1.24e-13!26;UBERON:0006554!2.45e-13!44;UBERON:0001008!5.49e-13!45;UBERON:0001225!6.68e-13!13;UBERON:0008987!6.68e-13!13;UBERON:0002417!1.76e-12!61;UBERON:0000916!1.76e-12!61;UBERON:0003886!4.68e-12!63;UBERON:0002553!1.49e-10!70;UBERON:0000353!1.01e-09!17;UBERON:0000464!1.09e-09!104;UBERON:0000466!1.36e-09!126;UBERON:0002118!2.24e-09!5;UBERON:0004532!2.24e-09!5;UBERON:0005177!2.87e-09!107;UBERON:0000992!3.62e-09!13;UBERON:0009569!1.39e-08!113;UBERON:0003567!9.10e-08!3;UBERON:0003838!9.10e-08!3;UBERON:0005169!9.10e-08!3;UBERON:0002321!9.10e-08!3;UBERON:0005215!9.10e-08!3;UBERON:0002303!9.10e-08!3;UBERON:0002319!9.10e-08!3;UBERON:0006853!2.49e-07!3;UBERON:0007685!2.49e-07!3;UBERON:0004134!2.49e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0003567;2.88e-20;2!UBERON:0003838;2.88e-20;2!UBERON:0003586;2.88e-20;2!UBERON:0005169;2.88e-20;2!UBERON:0002321;2.88e-20;2!UBERON:0005215;2.88e-20;2!UBERON:0002303;2.88e-20;2!UBERON:0002319;2.88e-20;2!UBERON:0004211;1.62e-15;10!UBERON:0009773;1.62e-15;10!UBERON:0001231;1.62e-15;10!UBERON:0004810;1.62e-15;10!UBERON:0003891;1.30e-10;4!UBERON:0006555;2.04e-10;15!UBERON:0004819;2.04e-10;15!UBERON:0001285;2.04e-10;15!UBERON:0007684;2.04e-10;15!UBERON:0002113;8.90e-10;24!UBERON:0011143;8.90e-10;24!UBERON:0002118;1.79e-08;5!UBERON:0005172;4.51e-08;52!UBERON:0005173;4.51e-08;52!UBERON:0000489;4.58e-08;29!UBERON:0006554;8.61e-08;30!UBERON:0001008;8.61e-08;30!UBERON:0000992;4.42e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003567,3.02e-20,2;UBERON:0003838,3.02e-20,2;UBERON:0003586,3.02e-20,2;UBERON:0005169,3.02e-20,2;UBERON:0002321,3.02e-20,2;UBERON:0005215,3.02e-20,2;UBERON:0002303,3.02e-20,2;UBERON:0002319,3.02e-20,2;UBERON:0004810,1.65e-15,10;UBERON:0003891,1.33e-10,4;UBERON:0004211,2.07e-10,15;UBERON:0009773,2.07e-10,15;UBERON:0001231,2.07e-10,15;UBERON:0001285,2.07e-10,15;UBERON:0007684,2.07e-10,15;UBERON:0004208,2.07e-10,15;UBERON:0006555,9.01e-10,16;UBERON:0004819,9.01e-10,16;UBERON:0002113,5.07e-09,26;UBERON:0003918,5.07e-09,26;UBERON:0011143,5.07e-09,26;UBERON:0005095,5.07e-09,26;UBERON:0007687,5.07e-09,26;UBERON:0002118,1.86e-08,5;UBERON:0005172,7.41e-08,54;UBERON:0005173,7.41e-08,54;UBERON:0000489,1.53e-07,31;UBERON:0000992,4.42e-07,13;UBERON:0002417,5.34e-07,60;UBERON:0000916,5.34e-07,60 | |||
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|short_description=p4@LRRN4 | |||
}} | }} |
Latest revision as of 09:41, 17 September 2015
Short description: | p4@LRRN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LRRN4_5end |
Coexpression cluster: | C463_Mesothelial_mesothelioma_Sertoli_mesenchymal_vagina_Cardiac_Fibroblast |
Association with transcript: | 175bp_to_NM_152611, uc002wmo.2, uc002wmp.2_5end |
EntrezGene: | LRRN4 |
HGNC: | 16208 |
UniProt: | Q8WUT4Q6ZMD1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 6.94e-24 | 19 |
mesangial cell | 3.02e-20 | 2 |
kidney interstitial cell | 3.02e-20 | 2 |
juxtaglomerular complex cell | 3.02e-20 | 2 |
renal interstitial pericyte | 3.02e-20 | 2 |
extraglomerular mesangial cell | 3.02e-20 | 2 |
kidney tubule cell | 1.65e-15 | 10 |
nephron tubule epithelial cell | 1.65e-15 | 10 |
pericyte cell | 1.33e-10 | 4 |
epithelial cell of nephron | 2.07e-10 | 15 |
kidney cell | 3.31e-09 | 17 |
kidney epithelial cell | 3.31e-09 | 17 |
lining cell | 2.35e-07 | 58 |
barrier cell | 2.35e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 3.02e-20 | 2 |
abdominal segment connective tissue | 3.02e-20 | 2 |
trunk connective tissue | 3.02e-20 | 2 |
interstitial tissue | 3.02e-20 | 2 |
extraglomerular mesangium | 3.02e-20 | 2 |
kidney interstitium | 3.02e-20 | 2 |
juxtaglomerular apparatus | 3.02e-20 | 2 |
mesangium | 3.02e-20 | 2 |
nephron tubule epithelium | 1.65e-15 | 10 |
stroma | 1.33e-10 | 4 |
nephron epithelium | 2.07e-10 | 15 |
renal tubule | 2.07e-10 | 15 |
nephron tubule | 2.07e-10 | 15 |
nephron | 2.07e-10 | 15 |
uriniferous tubule | 2.07e-10 | 15 |
nephrogenic mesenchyme | 2.07e-10 | 15 |
excretory tube | 9.01e-10 | 16 |
kidney epithelium | 9.01e-10 | 16 |
kidney | 5.07e-09 | 26 |
kidney mesenchyme | 5.07e-09 | 26 |
upper urinary tract | 5.07e-09 | 26 |
kidney rudiment | 5.07e-09 | 26 |
kidney field | 5.07e-09 | 26 |
right ovary | 1.86e-08 | 5 |
abdomen element | 7.41e-08 | 54 |
abdominal segment element | 7.41e-08 | 54 |
cavitated compound organ | 1.53e-07 | 31 |
female gonad | 4.42e-07 | 13 |
abdominal segment of trunk | 5.34e-07 | 60 |
abdomen | 5.34e-07 | 60 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.41e-17 | 14 |
female reproductive organ cancer | 3.31e-12 | 27 |
reproductive organ cancer | 2.45e-11 | 29 |