FFCP PHASE1:Hg19::chr3:191047053..191047089,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:191047053..191047089,+
|short_description=p4@CCDC50
|description=CAGE_peak_4_at_CCDC50_5end
|association_with_transcript=179bp_to_ENST00000392456,NM_174908...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=152137 | |EntrezGene=152137 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18111 | |HGNC=18111 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IVM0 | |UniProt=Q8IVM0 | ||
|association_with_transcript=179bp_to_ENST00000392456,NM_174908,NM_178335,uc003fsv.2,uc003fsw.2_5end | |||
|cluster_id=chr3:191047053..191047089,+ | |||
|coexpression_cluster_id=C44 | |||
|description=CAGE_peak_4_at_CCDC50_5end | |||
|id=chr3:191047053..191047089,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.17e-16!119;CL:0000115!7.92e-12!35;CL:0002139!2.65e-11!24;CL:0002078!7.42e-11!44;CL:0000359!4.60e-10!32;CL:0000213!3.47e-09!57;CL:0000215!3.47e-09!57;CL:0000192!7.39e-09!42;CL:0000514!7.39e-09!42;CL:0000071!1.05e-08!18;CL:0002546!1.05e-08!18;CL:0000236!2.37e-08!14;CL:0000183!5.80e-08!59;CL:0000393!8.08e-08!60;CL:0000211!8.08e-08!60;CL:0000680!1.35e-07!57;CL:0000056!1.35e-07!57;CL:0000355!1.35e-07!57;CL:0000220!1.82e-07!246;CL:0000187!3.54e-07!54;CL:0002321!4.37e-07!248;CL:0000945!5.23e-07!24;CL:0000826!5.23e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.78e-11;24!CL:0000115;1.46e-10;36!CL:0000359;1.10e-09;32!CL:0000071;8.32e-09;18!CL:0000236;3.33e-08;13!CL:0002078;2.50e-07;45!CL:0000945;4.04e-07;24!CL:0000192;5.99e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,9.79e-17,121;CL:0000115,2.75e-12,36;CL:0002139,2.33e-11,24;CL:0002078,3.63e-11,45;CL:0000359,4.12e-10,32;CL:0000213,2.32e-09,58;CL:0000215,2.32e-09,58;CL:0000192,9.41e-09,43;CL:0000514,9.41e-09,43;CL:0000071,9.55e-09,18;CL:0002546,9.55e-09,18;CL:0000236,2.17e-08,14;CL:0000393,1.03e-07,61;CL:0000211,1.03e-07,61;CL:0000680,1.73e-07,58;CL:0000056,1.73e-07,58;CL:0000355,1.73e-07,58;CL:0002321,4.39e-07,250;CL:0000187,4.56e-07,55;CL:0000945,6.14e-07,24;CL:0000826,6.14e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002546;8.32e-09;18!CL:0000514;5.99e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!3.56e-23!79;UBERON:0007798!3.56e-23!79;UBERON:0004535!1.03e-22!110;UBERON:0000055!5.13e-22!69;UBERON:0001009!1.87e-21!113;UBERON:0004872!1.29e-20!84;UBERON:0001981!5.36e-20!60;UBERON:0007500!5.36e-20!60;UBERON:0004537!5.36e-20!60;UBERON:0006965!5.36e-20!60;UBERON:0003914!6.73e-17!118;UBERON:0000025!1.01e-15!194;UBERON:0004111!8.42e-15!241;UBERON:0001637!2.58e-14!42;UBERON:0003509!2.58e-14!42;UBERON:0004572!2.58e-14!42;UBERON:0000477!7.08e-14!286;UBERON:0000119!1.90e-13!312;UBERON:0000483!7.70e-13!309;UBERON:0004573!5.49e-11!33;UBERON:0004571!5.49e-11!33;UBERON:0001986!1.05e-08!18;UBERON:0004638!1.05e-08!18;UBERON:0004852!1.05e-08!18;UBERON:0003081!3.26e-08!216;UBERON:0000467!3.57e-08!625;UBERON:0000480!4.93e-08!626;UBERON:0000947!9.57e-08!21;UBERON:0010191!9.57e-08!21;UBERON:0000490!9.81e-08!138;UBERON:0000468!1.88e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;4.51e-11;42!UBERON:0003509;4.51e-11;42!UBERON:0004572;4.51e-11;42!UBERON:0007500;7.07e-11;56!UBERON:0001981;7.07e-11;56!UBERON:0004537;7.07e-11;56!UBERON:0000055;1.72e-10;65!UBERON:0004573;2.58e-10;33!UBERON:0004571;2.58e-10;33!UBERON:0003914;9.00e-10;74!UBERON:0002049;6.69e-09;75!UBERON:0007798;6.69e-09;75!UBERON:0004638;8.32e-09;18!UBERON:0001986;8.32e-09;18!UBERON:0004852;8.32e-09;18!UBERON:0000947;6.29e-08;21!UBERON:0010191;6.29e-08;21!UBERON:0001009;5.13e-07;112!UBERON:0004535;8.17e-07;109 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,5.20e-23,78;UBERON:0007798,5.20e-23,78;UBERON:0004535,1.77e-22,109;UBERON:0000055,7.50e-22,68;UBERON:0001009,3.21e-21,112;UBERON:0004872,2.30e-20,83;UBERON:0007500,7.92e-20,59;UBERON:0001981,7.92e-20,59;UBERON:0004537,7.92e-20,59;UBERON:0006965,7.92e-20,59;UBERON:0003914,2.10e-17,117;UBERON:0000025,6.14e-16,192;UBERON:0004111,6.28e-15,240;UBERON:0001637,2.19e-14,42;UBERON:0003509,2.19e-14,42;UBERON:0004572,2.19e-14,42;UBERON:0000119,2.51e-13,309;UBERON:0000483,1.02e-12,306;UBERON:0004573,4.86e-11,33;UBERON:0004571,4.86e-11,33;UBERON:0004638,9.55e-09,18;UBERON:0001986,9.55e-09,18;UBERON:0004852,9.55e-09,18;UBERON:0007503,3.44e-08,78;UBERON:0000490,4.23e-08,148;UBERON:0000947,8.83e-08,21;UBERON:0010191,8.83e-08,21;UBERON:0003104,3.63e-07,160;UBERON:0009142,3.63e-07,160;UBERON:0005423,5.14e-07,581 | |||
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| ||
|short_description=p4@CCDC50 | |||
}} | }} |
Latest revision as of 10:27, 17 September 2015
Short description: | p4@CCDC50 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CCDC50_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | 179bp_to_ENST00000392456, NM_174908, NM_178335, uc003fsv.2, uc003fsw.2_5end |
EntrezGene: | CCDC50 |
HGNC: | 18111 |
UniProt: | Q8IVM0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 9.79e-17 | 121 |
endothelial cell | 2.75e-12 | 36 |
endothelial cell of vascular tree | 2.33e-11 | 24 |
meso-epithelial cell | 3.63e-11 | 45 |
vascular associated smooth muscle cell | 4.12e-10 | 32 |
lining cell | 2.32e-09 | 58 |
barrier cell | 2.32e-09 | 58 |
smooth muscle cell | 9.41e-09 | 43 |
smooth muscle myoblast | 9.41e-09 | 43 |
blood vessel endothelial cell | 9.55e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.55e-09 | 18 |
B cell | 2.17e-08 | 14 |
electrically responsive cell | 1.03e-07 | 61 |
electrically active cell | 1.03e-07 | 61 |
muscle precursor cell | 1.73e-07 | 58 |
myoblast | 1.73e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.73e-07 | 58 |
embryonic cell | 4.39e-07 | 250 |
muscle cell | 4.56e-07 | 55 |
lymphocyte of B lineage | 6.14e-07 | 24 |
pro-B cell | 6.14e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
vasculature | 5.20e-23 | 78 |
vascular system | 5.20e-23 | 78 |
cardiovascular system | 1.77e-22 | 109 |
vessel | 7.50e-22 | 68 |
circulatory system | 3.21e-21 | 112 |
splanchnic layer of lateral plate mesoderm | 2.30e-20 | 83 |
epithelial tube open at both ends | 7.92e-20 | 59 |
blood vessel | 7.92e-20 | 59 |
blood vasculature | 7.92e-20 | 59 |
vascular cord | 7.92e-20 | 59 |
epithelial tube | 2.10e-17 | 117 |
tube | 6.14e-16 | 192 |
anatomical conduit | 6.28e-15 | 240 |
artery | 2.19e-14 | 42 |
arterial blood vessel | 2.19e-14 | 42 |
arterial system | 2.19e-14 | 42 |
cell layer | 2.51e-13 | 309 |
epithelium | 1.02e-12 | 306 |
systemic artery | 4.86e-11 | 33 |
systemic arterial system | 4.86e-11 | 33 |
blood vessel endothelium | 9.55e-09 | 18 |
endothelium | 9.55e-09 | 18 |
cardiovascular system endothelium | 9.55e-09 | 18 |
epithelial vesicle | 3.44e-08 | 78 |
unilaminar epithelium | 4.23e-08 | 148 |
aorta | 8.83e-08 | 21 |
aortic system | 8.83e-08 | 21 |
mesenchyme | 3.63e-07 | 160 |
entire embryonic mesenchyme | 3.63e-07 | 160 |
developing anatomical structure | 5.14e-07 | 581 |