FFCP PHASE1:Hg19::chr1:155278625..155278745,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:155278625..155278745,+
|short_description=p1@FDPS
|description=CAGE_peak_1_at_FDPS_5end
|association_with_transcript=0bp_to_ENST00000356657,ENST00000368356...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2224 | |EntrezGene=2224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3631 | |HGNC=3631 | ||
|TSSclassifier=strong | |||
|UniProt=P14324 | |UniProt=P14324 | ||
|association_with_transcript=0bp_to_ENST00000356657,ENST00000368356,ENST00000471117,ENST00000474345,ENST00000487002,ENST00000491013,ENST00000495308,NM_001135821,uc001fke.2,uc001fkf.2_5end | |||
|cluster_id=chr1:155278625..155278745,+ | |||
|coexpression_cluster_id=C2530 | |||
|description=CAGE_peak_1_at_FDPS_5end | |||
|id=chr1:155278625..155278745,+ | |||
|ontology_enrichment_celltype=CL:0000548!5.44e-33!679;CL:0000004!5.44e-33!679;CL:0000255!5.44e-33!679;CL:0000012!3.23e-32!682;CL:0000144!4.55e-24!625;CL:0002371!5.88e-23!591;CL:0000220!1.37e-20!246;CL:0000003!1.73e-20!722;CL:0002321!2.76e-20!248;CL:0000066!3.17e-19!254;CL:0000222!8.86e-14!119;CL:0000055!1.61e-13!180;CL:0000063!2.52e-12!578;CL:0000183!9.31e-10!59;CL:0000187!5.55e-08!54;CL:0000115!5.72e-08!35;CL:1000449!7.17e-08!16;CL:0002078!8.08e-08!44;CL:0000680!9.59e-08!57;CL:0000056!9.59e-08!57;CL:0000355!9.59e-08!57;CL:0000393!1.22e-07!60;CL:0000211!1.22e-07!60;CL:0002139!2.48e-07!24;CL:0002681!7.93e-07!13;CL:0002584!7.93e-07!13;CL:1000507!9.78e-07!12;CL:1000494!9.78e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:1000449;6.12e-08;15!CL:0002139;2.41e-07;24!CL:0002159;3.76e-07;14!CL:0000115;4.11e-07;36!CL:0002681;6.60e-07;12!CL:0002584;6.60e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,8.40e-21,250;CL:0000066,4.14e-19,253;CL:0000222,2.95e-14,121;CL:0000115,2.11e-08,36;CL:0002078,3.18e-08,45;CL:0000187,4.70e-08,55;CL:1000449,6.14e-08,15;CL:0000680,8.09e-08,58;CL:0000056,8.09e-08,58;CL:0000355,8.09e-08,58;CL:0000393,1.02e-07,61;CL:0000211,1.02e-07,61;CL:0002139,2.48e-07,24;CL:0002159,3.81e-07,14;CL:0000213,5.45e-07,58;CL:0000215,5.45e-07,58;CL:0002681,6.62e-07,12;CL:0002584,6.62e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.20e-14!143;UBERON:0000119!9.33e-13!312;UBERON:0002100!2.19e-12!216;UBERON:0000483!4.44e-12!309;UBERON:0003914!2.95e-11!118;UBERON:0003104!5.98e-11!238;UBERON:0009142!5.98e-11!238;UBERON:0000490!1.19e-10!138;UBERON:0000914!3.14e-10!83;UBERON:0002329!3.14e-10!83;UBERON:0003077!3.14e-10!83;UBERON:0003059!3.14e-10!83;UBERON:0007282!3.14e-10!83;UBERON:0009618!3.14e-10!83;UBERON:0007285!3.14e-10!83;UBERON:0000486!3.47e-10!82;UBERON:0002049!7.29e-10!79;UBERON:0007798!7.29e-10!79;UBERON:0000475!2.82e-09!365;UBERON:0000481!3.26e-08!347;UBERON:0004290!4.04e-08!70;UBERON:0004211!7.17e-08!16;UBERON:0001285!7.17e-08!16;UBERON:0007684!7.17e-08!16;UBERON:0003220!7.17e-08!16;UBERON:0004208!7.17e-08!16;UBERON:0001737!1.21e-07!9;UBERON:0005085!1.30e-07!29;UBERON:0000477!2.56e-07!286;UBERON:0009569!3.06e-07!113;UBERON:0006555!5.39e-07!17;UBERON:0005103!5.39e-07!17;UBERON:0000083!5.39e-07!17;UBERON:0009201!5.39e-07!17;UBERON:0004819!5.39e-07!17;UBERON:0006553!5.39e-07!17;UBERON:0003074!5.39e-07!17;UBERON:0003060!5.39e-07!17;UBERON:0001225!7.93e-07!13;UBERON:0008987!7.93e-07!13;UBERON:0000055!8.62e-07!69;UBERON:0009773!9.78e-07!12;UBERON:0001231!9.78e-07!12;UBERON:0004810!9.78e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;6.12e-08;15!UBERON:0004819;6.12e-08;15!UBERON:0001285;6.12e-08;15!UBERON:0007684;6.12e-08;15!UBERON:0010371;9.54e-08;31!UBERON:0001737;1.21e-07;9!UBERON:0001557;1.21e-07;9!UBERON:0000353;3.52e-07;15!UBERON:0001225;6.60e-07;12!UBERON:0008987;6.60e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,3.42e-13,309;UBERON:0000490,5.88e-13,148;UBERON:0000483,1.67e-12,306;UBERON:0003914,3.61e-11,117;UBERON:0002100,1.85e-10,199;UBERON:0007503,2.72e-10,78;UBERON:0000486,2.89e-10,83;UBERON:0002049,3.48e-10,78;UBERON:0007798,3.48e-10,78;UBERON:0005256,1.08e-09,122;UBERON:0003104,2.17e-09,160;UBERON:0009142,2.17e-09,160;UBERON:0002329,3.38e-08,71;UBERON:0003059,3.38e-08,71;UBERON:0007282,3.38e-08,71;UBERON:0004290,3.38e-08,71;UBERON:0009618,3.38e-08,71;UBERON:0003077,5.89e-08,72;UBERON:0007285,5.89e-08,72;UBERON:0004211,6.14e-08,15;UBERON:0009773,6.14e-08,15;UBERON:0001231,6.14e-08,15;UBERON:0001285,6.14e-08,15;UBERON:0007684,6.14e-08,15;UBERON:0004208,6.14e-08,15;UBERON:0007524,1.07e-07,73;UBERON:0001737,1.21e-07,9;UBERON:0001048,1.91e-07,160;UBERON:0005085,2.74e-07,31;UBERON:0000353,3.48e-07,15;UBERON:0000055,4.70e-07,68;UBERON:0006555,5.11e-07,16;UBERON:0004819,5.11e-07,16;UBERON:0009569,6.60e-07,112;UBERON:0001225,6.62e-07,12;UBERON:0008987,6.62e-07,12 | |||
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| ||
|short_description=p1@FDPS | |||
}} | }} |
Latest revision as of 12:24, 17 September 2015
Short description: | p1@FDPS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FDPS_5end |
Coexpression cluster: | C2530_Retinal_Mallassezderived_Bronchial_Keratinocyte_small_Hep2_Tracheal |
Association with transcript: | 0bp_to_ENST00000356657, ENST00000368356, ENST00000471117, ENST00000474345, ENST00000487002, ENST00000491013, ENST00000495308, NM_001135821, uc001fke.2, uc001fkf.2_5end |
EntrezGene: | FDPS |
HGNC: | 3631 |
UniProt: | P14324 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 8.40e-21 | 250 |
epithelial cell | 4.14e-19 | 253 |
mesodermal cell | 2.95e-14 | 121 |
endothelial cell | 2.11e-08 | 36 |
meso-epithelial cell | 3.18e-08 | 45 |
muscle cell | 4.70e-08 | 55 |
epithelial cell of nephron | 6.14e-08 | 15 |
muscle precursor cell | 8.09e-08 | 58 |
myoblast | 8.09e-08 | 58 |
multi-potent skeletal muscle stem cell | 8.09e-08 | 58 |
electrically responsive cell | 1.02e-07 | 61 |
electrically active cell | 1.02e-07 | 61 |
endothelial cell of vascular tree | 2.48e-07 | 24 |
general ecto-epithelial cell | 3.81e-07 | 14 |
lining cell | 5.45e-07 | 58 |
barrier cell | 5.45e-07 | 58 |
kidney cortical cell | 6.62e-07 | 12 |
renal cortical epithelial cell | 6.62e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cell layer | 3.42e-13 | 309 |
unilaminar epithelium | 5.88e-13 | 148 |
epithelium | 1.67e-12 | 306 |
epithelial tube | 3.61e-11 | 117 |
trunk | 1.85e-10 | 199 |
epithelial vesicle | 2.72e-10 | 78 |
multilaminar epithelium | 2.89e-10 | 83 |
vasculature | 3.48e-10 | 78 |
vascular system | 3.48e-10 | 78 |
trunk mesenchyme | 1.08e-09 | 122 |
mesenchyme | 2.17e-09 | 160 |
entire embryonic mesenchyme | 2.17e-09 | 160 |
somite | 3.38e-08 | 71 |
presomitic mesoderm | 3.38e-08 | 71 |
presumptive segmental plate | 3.38e-08 | 71 |
dermomyotome | 3.38e-08 | 71 |
trunk paraxial mesoderm | 3.38e-08 | 71 |
paraxial mesoderm | 5.89e-08 | 72 |
presumptive paraxial mesoderm | 5.89e-08 | 72 |
nephron epithelium | 6.14e-08 | 15 |
renal tubule | 6.14e-08 | 15 |
nephron tubule | 6.14e-08 | 15 |
nephron | 6.14e-08 | 15 |
uriniferous tubule | 6.14e-08 | 15 |
nephrogenic mesenchyme | 6.14e-08 | 15 |
dense mesenchyme tissue | 1.07e-07 | 73 |
larynx | 1.21e-07 | 9 |
primordium | 1.91e-07 | 160 |
ectodermal placode | 2.74e-07 | 31 |
parenchyma | 3.48e-07 | 15 |
vessel | 4.70e-07 | 68 |
excretory tube | 5.11e-07 | 16 |
kidney epithelium | 5.11e-07 | 16 |
subdivision of trunk | 6.60e-07 | 112 |
cortex of kidney | 6.62e-07 | 12 |
renal parenchyma | 6.62e-07 | 12 |