FFCP PHASE1:Hg19::chr6:30689401..30689439,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:30689401..30689439,+ to FFCP PHASE1:Hg19::chr6:30689401..30689439,+: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=203068 | |EntrezGene=203068 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20778 | |HGNC=20778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc011dmq.1_5end | |||
|cluster_id=chr6:30689401..30689439,+ | |||
|description=CAGE_peak_2_at_TUBB_5end | |||
|id=chr6:30689401..30689439,+ | |||
|ontology_enrichment_celltype=CL:0000548!5.26e-24!679;CL:0000004!5.26e-24!679;CL:0000255!5.26e-24!679;CL:0000012!4.40e-23!682;CL:0000220!1.18e-22!246;CL:0002321!2.16e-22!248;CL:0000055!1.97e-20!180;CL:0000144!1.14e-18!625;CL:0000222!7.09e-16!119;CL:0002371!4.45e-14!591;CL:0000192!1.98e-12!42;CL:0000514!1.98e-12!42;CL:0000393!2.42e-12!60;CL:0000211!2.42e-12!60;CL:0000133!3.77e-12!59;CL:0000183!5.59e-12!59;CL:0000003!6.30e-12!722;CL:0000359!1.16e-11!32;CL:0000221!1.30e-11!71;CL:0000680!7.18e-11!57;CL:0000056!7.18e-11!57;CL:0000355!7.18e-11!57;CL:0000187!2.40e-10!54;CL:0000333!1.03e-08!41;CL:0002319!2.78e-07!25;CL:0000066!4.07e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.36e-11;32!CL:0000192;2.25e-08;43!CL:0002319;9.07e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.31e-22,250;CL:0000222,6.05e-16,121;CL:0000133,7.91e-13,59;CL:0000192,2.92e-12,43;CL:0000514,2.92e-12,43;CL:0000393,3.00e-12,61;CL:0000211,3.00e-12,61;CL:0000359,3.14e-12,32;CL:0000221,1.69e-11,72;CL:0000680,9.81e-11,58;CL:0000056,9.81e-11,58;CL:0000355,9.81e-11,58;CL:0000187,3.49e-10,55;CL:0000333,3.40e-09,41;CL:0002319,1.32e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000514;2.25e-08;43!CL:0000133;9.17e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!9.87e-16!79;UBERON:0007798!9.87e-16!79;UBERON:0001637!1.24e-12!42;UBERON:0003509!1.24e-12!42;UBERON:0004572!1.24e-12!42;UBERON:0000055!2.82e-12!69;UBERON:0001981!1.15e-11!60;UBERON:0007500!1.15e-11!60;UBERON:0004537!1.15e-11!60;UBERON:0006965!1.15e-11!60;UBERON:0004535!1.02e-10!110;UBERON:0004872!1.38e-10!84;UBERON:0001009!1.22e-09!113;UBERON:0003914!2.81e-09!118;UBERON:0004573!3.39e-09!33;UBERON:0004571!3.39e-09!33;UBERON:0001134!6.55e-09!61;UBERON:0002036!6.55e-09!61;UBERON:0003082!6.55e-09!61;UBERON:0000468!1.03e-08!659;UBERON:0000922!1.37e-08!612;UBERON:0000923!1.47e-08!604;UBERON:0005291!1.47e-08!604;UBERON:0006598!1.47e-08!604;UBERON:0002532!1.47e-08!604;UBERON:0002050!1.57e-08!605;UBERON:0005423!1.57e-08!605;UBERON:0002385!6.49e-08!63;UBERON:0001015!6.49e-08!63;UBERON:0000383!6.49e-08!63;UBERON:0000914!7.07e-08!83;UBERON:0002329!7.07e-08!83;UBERON:0003077!7.07e-08!83;UBERON:0003059!7.07e-08!83;UBERON:0007282!7.07e-08!83;UBERON:0009618!7.07e-08!83;UBERON:0007285!7.07e-08!83;UBERON:0004290!8.28e-08!70;UBERON:0000467!2.05e-07!625;UBERON:0000480!3.59e-07!626;UBERON:0003081!6.60e-07!216;UBERON:0000486!8.12e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.75e-09;42!UBERON:0003509;1.75e-09;42!UBERON:0004572;1.75e-09;42!UBERON:0004573;1.86e-08;33!UBERON:0004571;1.86e-08;33!UBERON:0007500;3.41e-08;56!UBERON:0001981;3.41e-08;56!UBERON:0004537;3.41e-08;56!UBERON:0002049;4.80e-08;75!UBERON:0007798;4.80e-08;75!UBERON:0003914;2.04e-07;74!UBERON:0000055;3.05e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,8.20e-17,78;UBERON:0007798,8.20e-17,78;UBERON:0000055,2.50e-13,68;UBERON:0001637,4.03e-13,42;UBERON:0003509,4.03e-13,42;UBERON:0004572,4.03e-13,42;UBERON:0007500,1.65e-12,59;UBERON:0001981,1.65e-12,59;UBERON:0004537,1.65e-12,59;UBERON:0006965,1.65e-12,59;UBERON:0004535,3.01e-12,109;UBERON:0004872,1.25e-11,83;UBERON:0001009,5.05e-11,112;UBERON:0003914,1.25e-10,117;UBERON:0007503,7.49e-10,78;UBERON:0004573,1.68e-09,33;UBERON:0004571,1.68e-09,33;UBERON:0001134,3.63e-09,62;UBERON:0002036,3.63e-09,62;UBERON:0003082,3.63e-09,62;UBERON:0000922,2.70e-08,592;UBERON:0002385,3.07e-08,64;UBERON:0001015,3.07e-08,64;UBERON:0000383,3.07e-08,64;UBERON:0002329,4.24e-08,71;UBERON:0003059,4.24e-08,71;UBERON:0007282,4.24e-08,71;UBERON:0004290,4.24e-08,71;UBERON:0009618,4.24e-08,71;UBERON:0005423,4.85e-08,581;UBERON:0000926,7.26e-08,315;UBERON:0004120,7.26e-08,315;UBERON:0006603,7.26e-08,315;UBERON:0003081,8.51e-08,203;UBERON:0007524,9.50e-08,73;UBERON:0003077,1.07e-07,72;UBERON:0007285,1.07e-07,72;UBERON:0000486,3.88e-07,83 | |||
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| ||
|short_description=p2@TUBB | |||
}} | }} |
Latest revision as of 18:04, 17 September 2015
Short description: | p2@TUBB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TUBB_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc011dmq.1_5end |
EntrezGene: | TUBB |
HGNC: | 20778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.31e-22 | 250 |
mesodermal cell | 6.05e-16 | 121 |
neurectodermal cell | 7.91e-13 | 59 |
smooth muscle cell | 2.92e-12 | 43 |
smooth muscle myoblast | 2.92e-12 | 43 |
electrically responsive cell | 3.00e-12 | 61 |
electrically active cell | 3.00e-12 | 61 |
vascular associated smooth muscle cell | 3.14e-12 | 32 |
ectodermal cell | 1.69e-11 | 72 |
muscle precursor cell | 9.81e-11 | 58 |
myoblast | 9.81e-11 | 58 |
multi-potent skeletal muscle stem cell | 9.81e-11 | 58 |
muscle cell | 3.49e-10 | 55 |
migratory neural crest cell | 3.40e-09 | 41 |
neural cell | 1.32e-07 | 25 |