FFCP PHASE1:Hg19::chr4:41750020..41750029,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8929 | |EntrezGene=8929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9143 | |HGNC=9143 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-296bp_to_ENST00000510424_5end | |association_with_transcript=-296bp_to_ENST00000510424_5end | ||
|cluster_id=chr4:41750020..41750029,- | |||
|coexpression_cluster_id=C89 | |coexpression_cluster_id=C89 | ||
|description=CAGE_peak_9_at_PHOX2B_5end | |description=CAGE_peak_9_at_PHOX2B_5end | ||
|id=chr4:41750020..41750029,- | |id=chr4:41750020..41750029,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000082;6.95e-12;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,6.95e-12,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.67e-08;29!UBERON:0001041;4.53e-08;30 | |||
|ontology_enrichment_disease=DOID:169!7.13e-20!6;DOID:171!2.37e-12!10;DOID:5409!1.70e-08!4 | |ontology_enrichment_disease=DOID:169!7.13e-20!6;DOID:171!2.37e-12!10;DOID:5409!1.70e-08!4 | ||
|ontology_enrichment_disease_v019=DOID:5409;3.10e-50;4!DOID:1325;1.78e-29;7!DOID:3904;1.78e-29;7!DOID:3905;2.62e-23;9!DOID:1324;1.22e-14;15!DOID:0050615;8.02e-14;16 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.10e-50,4;DOID:1325,1.78e-29,7;DOID:3904,1.78e-29,7;DOID:3905,2.62e-23,9;DOID:1324,1.22e-14,15;DOID:0050615,8.02e-14,16 | |||
|ontology_enrichment_uberon=UBERON:0002148!8.47e-57!2;UBERON:0009662!8.47e-57!2;UBERON:0000988!2.64e-38!3;UBERON:0006331!2.64e-38!3;UBERON:0002298!3.74e-32!8;UBERON:0000013!1.28e-23!5;UBERON:0002410!1.28e-23!5;UBERON:0004733!9.70e-22!12;UBERON:0002028!9.70e-22!12;UBERON:0007277!9.70e-22!12;UBERON:0004732!3.91e-20!13;UBERON:0003076!1.46e-17!15;UBERON:0003057!1.46e-17!15;UBERON:0000010!1.31e-13!8;UBERON:0002680!1.58e-13!9;UBERON:0002308!1.58e-13!9;UBERON:0000125!1.58e-13!9;UBERON:0001895!1.58e-13!9;UBERON:0010092!1.58e-13!9;UBERON:0001896!1.20e-10!3;UBERON:0005290!1.20e-10!3;UBERON:0010096!1.20e-10!3;UBERON:0000073!1.37e-07!94;UBERON:0001016!1.37e-07!94 | |ontology_enrichment_uberon=UBERON:0002148!8.47e-57!2;UBERON:0009662!8.47e-57!2;UBERON:0000988!2.64e-38!3;UBERON:0006331!2.64e-38!3;UBERON:0002298!3.74e-32!8;UBERON:0000013!1.28e-23!5;UBERON:0002410!1.28e-23!5;UBERON:0004733!9.70e-22!12;UBERON:0002028!9.70e-22!12;UBERON:0007277!9.70e-22!12;UBERON:0004732!3.91e-20!13;UBERON:0003076!1.46e-17!15;UBERON:0003057!1.46e-17!15;UBERON:0000010!1.31e-13!8;UBERON:0002680!1.58e-13!9;UBERON:0002308!1.58e-13!9;UBERON:0000125!1.58e-13!9;UBERON:0001895!1.58e-13!9;UBERON:0010092!1.58e-13!9;UBERON:0001896!1.20e-10!3;UBERON:0005290!1.20e-10!3;UBERON:0010096!1.20e-10!3;UBERON:0000073!1.37e-07!94;UBERON:0001016!1.37e-07!94 | ||
|ontology_enrichment_uberon_v019=UBERON:0004802;6.95e-12;19!UBERON:0000115;6.95e-12;19!UBERON:0002048;1.80e-10;22!UBERON:0004807;1.80e-10;22!UBERON:0000117;1.80e-10;22!UBERON:0000171;1.80e-10;22!UBERON:0000170;1.80e-10;22!UBERON:0005911;4.53e-08;36!UBERON:0005178;2.32e-07;34!UBERON:0000072;2.32e-07;37!UBERON:0005181;2.32e-07;35!UBERON:0002224;2.32e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,6.95e-12,19;UBERON:0000115,6.95e-12,19;UBERON:0002048,1.80e-10,22;UBERON:0000117,1.80e-10,22;UBERON:0000171,1.80e-10,22;UBERON:0000170,1.80e-10,22;UBERON:0005597,1.80e-10,22;UBERON:0000118,1.80e-10,22;UBERON:0004807,1.52e-08,28;UBERON:0005178,2.74e-07,34;UBERON:0002224,2.74e-07,34;UBERON:0005181,4.03e-07,35;UBERON:0005153,8.21e-07,37 | |||
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|short_description=p9@PHOX2B | |short_description=p9@PHOX2B | ||
}} | }} |
Latest revision as of 19:49, 17 September 2015
Short description: | p9@PHOX2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PHOX2B_5end |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | -296bp_to_ENST00000510424_5end |
EntrezGene: | PHOX2B |
HGNC: | 9143 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 6.95e-12 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 6.95e-12 | 19 |
lung epithelium | 6.95e-12 | 19 |
lung | 1.80e-10 | 22 |
respiratory tube | 1.80e-10 | 22 |
respiration organ | 1.80e-10 | 22 |
pair of lungs | 1.80e-10 | 22 |
lung primordium | 1.80e-10 | 22 |
lung bud | 1.80e-10 | 22 |
respiratory system epithelium | 1.52e-08 | 28 |
thoracic cavity element | 2.74e-07 | 34 |
thoracic cavity | 2.74e-07 | 34 |
thoracic segment organ | 4.03e-07 | 35 |
epithelial bud | 8.21e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.10e-50 | 4 |
bronchus cancer | 1.78e-29 | 7 |
bronchogenic carcinoma | 1.78e-29 | 7 |
lung carcinoma | 2.62e-23 | 9 |
lung cancer | 1.22e-14 | 15 |
respiratory system cancer | 8.02e-14 | 16 |