FFCP PHASE1:Hg19::chr6:31540557..31540570,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=4049 | |EntrezGene=4049 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | ||
|HGNC=6709 | |HGNC=6709 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=-134bp_to_uc003nuf.2,uc003nug.2,uc003nuh.2,uc010jsr.2_5end | |association_with_transcript=-134bp_to_uc003nuf.2,uc003nug.2,uc003nuh.2,uc010jsr.2_5end | ||
|cluster_id=chr6:31540557..31540570,+ | |||
|coexpression_cluster_id=C1110 | |coexpression_cluster_id=C1110 | ||
|description=CAGE_peak_4_at_LTA_5end | |description=CAGE_peak_4_at_LTA_5end |
Latest revision as of 21:11, 17 September 2015
Short description: | p4@LTA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LTA_5end |
Coexpression cluster: | C1110_cord_mycosis_colon_embryonic_argyrophil_xeroderma_CD19 |
Association with transcript: | -134bp_to_uc003nuf.2, uc003nug.2, uc003nuh.2, uc010jsr.2_5end |
EntrezGene: | LTA |
HGNC: | 6709 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p4@LTA |
---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.23e-07 | 52 |
lymphocyte | 1.66e-07 | 53 |
common lymphoid progenitor | 1.66e-07 | 53 |
T cell | 2.43e-07 | 25 |
pro-T cell | 2.43e-07 | 25 |
Showing 1 to 5 of 5 entries
Ontology term | p-value | n |
---|---|---|
umbilical cord | 6.39e-17 | 10 |
blastocyst | 6.39e-17 | 10 |
blastula | 6.39e-17 | 10 |
bilaminar disc | 6.39e-17 | 10 |
inner cell mass | 6.39e-17 | 10 |
cleaving embryo | 6.39e-17 | 10 |
connecting stalk | 6.39e-17 | 10 |
inner cell mass derived epiblast | 6.39e-17 | 10 |
extraembryonic mesoderm | 6.39e-17 | 10 |
blood | 1.21e-11 | 15 |
Showing 1 to 10 of 13 entries
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 9.91e-41 | 1 |
cutaneous T cell lymphoma | 9.91e-41 | 1 |
mycosis fungoides | 9.91e-41 | 1 |
Showing 1 to 3 of 3 entries