FFCP PHASE1:Hg19::chr12:25102252..25102334,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:25102252..25102334,- to FFCP PHASE1:Hg19::chr12:25102252..25102334,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=586 | |EntrezGene=586 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=976 | |HGNC=976 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001rgd.3,uc001rge.3,uc010siy.1_5end | |||
|cluster_id=chr12:25102252..25102334,- | |||
|description=CAGE_peak_3_at_BCAT1_5end | |||
|id=chr12:25102252..25102334,- | |||
|ontology_enrichment_celltype=CL:0000012!3.99e-19!682;CL:0000144!1.03e-18!625;CL:0000548!2.00e-18!679;CL:0000004!2.00e-18!679;CL:0000255!2.00e-18!679;CL:0000222!1.85e-13!119;CL:0000034!1.40e-12!444;CL:0000048!3.12e-12!430;CL:0002371!4.12e-12!591;CL:0000723!2.54e-11!436;CL:0000187!1.70e-08!54;CL:0000055!1.94e-08!180;CL:0000003!2.50e-08!722;CL:0000393!5.50e-08!60;CL:0000211!5.50e-08!60;CL:0000183!9.97e-08!59;CL:0000680!1.54e-07!57;CL:0000056!1.54e-07!57;CL:0000355!1.54e-07!57;CL:0000192!1.75e-07!42;CL:0000514!1.75e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.30e-07;33!CL:0002057;6.30e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,8.44e-15,441;CL:0000048,2.05e-14,427;CL:0000222,3.78e-14,121;CL:0000723,2.14e-13,433;CL:0000187,2.58e-09,55;CL:0000393,6.51e-09,61;CL:0000211,6.51e-09,61;CL:0000680,3.43e-08,58;CL:0000056,3.43e-08,58;CL:0000355,3.43e-08,58;CL:0000192,3.64e-08,43;CL:0000514,3.64e-08,43;CL:0000134,5.17e-07,354;CL:0002320,6.39e-07,361;CL:0000219,8.18e-07,386;CL:0000213,9.84e-07,58;CL:0000215,9.84e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!3.58e-12!79;UBERON:0007798!3.58e-12!79;UBERON:0004872!5.77e-11!84;UBERON:0001981!9.03e-11!60;UBERON:0007500!9.03e-11!60;UBERON:0004537!9.03e-11!60;UBERON:0006965!9.03e-11!60;UBERON:0003081!1.93e-10!216;UBERON:0000055!3.39e-10!69;UBERON:0004535!1.09e-08!110;UBERON:0001009!1.71e-08!113;UBERON:0001637!1.89e-07!42;UBERON:0003509!1.89e-07!42;UBERON:0004572!1.89e-07!42;UBERON:0001134!4.64e-07!61;UBERON:0002036!4.64e-07!61;UBERON:0003082!4.64e-07!61;UBERON:0002204!6.23e-07!167;UBERON:0000478!6.98e-07!24;UBERON:0000490!8.98e-07!138;UBERON:0002384!9.34e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0007500;3.94e-07;56!UBERON:0001981;3.94e-07;56!UBERON:0004537;3.94e-07;56!UBERON:0000478;4.52e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.09e-14,315;UBERON:0004120,1.09e-14,315;UBERON:0006603,1.09e-14,315;UBERON:0002049,2.32e-12,78;UBERON:0007798,2.32e-12,78;UBERON:0003081,1.42e-11,203;UBERON:0004872,4.33e-11,83;UBERON:0007500,6.65e-11,59;UBERON:0001981,6.65e-11,59;UBERON:0004537,6.65e-11,59;UBERON:0006965,6.65e-11,59;UBERON:0000055,2.05e-10,68;UBERON:0004535,1.73e-09,109;UBERON:0001009,4.58e-09,112;UBERON:0002384,5.85e-08,371;UBERON:0001637,8.58e-08,42;UBERON:0003509,8.58e-08,42;UBERON:0004572,8.58e-08,42;UBERON:0002204,1.20e-07,167;UBERON:0001134,2.41e-07,62;UBERON:0002036,2.41e-07,62;UBERON:0003082,2.41e-07,62;UBERON:0000490,7.69e-07,148;UBERON:0000478,8.10e-07,24;UBERON:0002385,9.74e-07,64;UBERON:0001015,9.74e-07,64;UBERON:0000383,9.74e-07,64 | |||
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| ||
|short_description=p3@BCAT1 | |||
}} | }} |
Latest revision as of 22:12, 17 September 2015
Short description: | p3@BCAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BCAT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc001rgd.3, uc001rge.3, uc010siy.1_5end |
EntrezGene: | BCAT1 |
HGNC: | 976 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 8.44e-15 | 441 |
multi fate stem cell | 2.05e-14 | 427 |
mesodermal cell | 3.78e-14 | 121 |
somatic stem cell | 2.14e-13 | 433 |
muscle cell | 2.58e-09 | 55 |
electrically responsive cell | 6.51e-09 | 61 |
electrically active cell | 6.51e-09 | 61 |
muscle precursor cell | 3.43e-08 | 58 |
myoblast | 3.43e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.43e-08 | 58 |
smooth muscle cell | 3.64e-08 | 43 |
smooth muscle myoblast | 3.64e-08 | 43 |
mesenchymal cell | 5.17e-07 | 354 |
connective tissue cell | 6.39e-07 | 361 |
motile cell | 8.18e-07 | 386 |
lining cell | 9.84e-07 | 58 |
barrier cell | 9.84e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.09e-14 | 315 |
mesoderm-derived structure | 1.09e-14 | 315 |
presumptive mesoderm | 1.09e-14 | 315 |
vasculature | 2.32e-12 | 78 |
vascular system | 2.32e-12 | 78 |
lateral plate mesoderm | 1.42e-11 | 203 |
splanchnic layer of lateral plate mesoderm | 4.33e-11 | 83 |
epithelial tube open at both ends | 6.65e-11 | 59 |
blood vessel | 6.65e-11 | 59 |
blood vasculature | 6.65e-11 | 59 |
vascular cord | 6.65e-11 | 59 |
vessel | 2.05e-10 | 68 |
cardiovascular system | 1.73e-09 | 109 |
circulatory system | 4.58e-09 | 112 |
connective tissue | 5.85e-08 | 371 |
artery | 8.58e-08 | 42 |
arterial blood vessel | 8.58e-08 | 42 |
arterial system | 8.58e-08 | 42 |
musculoskeletal system | 1.20e-07 | 167 |
skeletal muscle tissue | 2.41e-07 | 62 |
striated muscle tissue | 2.41e-07 | 62 |
myotome | 2.41e-07 | 62 |
unilaminar epithelium | 7.69e-07 | 148 |
extraembryonic structure | 8.10e-07 | 24 |
muscle tissue | 9.74e-07 | 64 |
musculature | 9.74e-07 | 64 |
musculature of body | 9.74e-07 | 64 |