FFCP PHASE1:Hg19::chr3:32993109..32993124,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1233 | |EntrezGene=1233 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1605 | |HGNC=1605 | ||
|TSSclassifier=strong | |||
|UniProt=P51679,A0N0Q1 | |UniProt=P51679,A0N0Q1 | ||
|association_with_transcript=43bp_to_ENST00000330953,NM_005508,uc003cfg.1_5end | |association_with_transcript=43bp_to_ENST00000330953,NM_005508,uc003cfg.1_5end | ||
|cluster_id=chr3:32993109..32993124,+ | |||
|coexpression_cluster_id=C1361 | |coexpression_cluster_id=C1361 | ||
|description=CAGE_peak_2_at_CCR4_5end | |description=CAGE_peak_2_at_CCR4_5end | ||
|id=chr3:32993109..32993124,+ | |id=chr3:32993109..32993124,+ | ||
|ontology_enrichment_celltype=CL:0000988!1.80e-33!182;CL:0000037!2.31e-33!172;CL:0000566!2.31e-33!172;CL:0000738!9.65e-33!140;CL:0002032!1.40e-29!165;CL:0000837!1.40e-29!165;CL:0002031!3.34e-23!124;CL:0000084!5.62e-23!25;CL:0000827!5.62e-23!25;CL:0002087!6.39e-22!119;CL:0000791!1.56e-18!18;CL:0000789!1.56e-18!18;CL:0002420!1.56e-18!18;CL:0002419!1.56e-18!18;CL:0000790!1.56e-18!18;CL:0000838!1.61e-15!52;CL:0000542!5.12e-15!53;CL:0000051!5.12e-15!53;CL:0000763!1.07e-14!112;CL:0000049!1.07e-14!112;CL:0000625!4.04e-13!11;CL:0000766!1.82e-12!76;CL:0000094!7.23e-09!8;CL:0000839!8.32e-09!70;CL:0000624!1.61e-08!6;CL:0000080!1.76e-08!6;CL:0002057!2.77e-08!42;CL:0000557!5.69e-08!71;CL:0000081!9.22e-08!11;CL:0000860!2.68e-07!45;CL:0002009!7.65e-07!65 | |ontology_enrichment_celltype=CL:0000988!1.80e-33!182;CL:0000037!2.31e-33!172;CL:0000566!2.31e-33!172;CL:0000738!9.65e-33!140;CL:0002032!1.40e-29!165;CL:0000837!1.40e-29!165;CL:0002031!3.34e-23!124;CL:0000084!5.62e-23!25;CL:0000827!5.62e-23!25;CL:0002087!6.39e-22!119;CL:0000791!1.56e-18!18;CL:0000789!1.56e-18!18;CL:0002420!1.56e-18!18;CL:0002419!1.56e-18!18;CL:0000790!1.56e-18!18;CL:0000838!1.61e-15!52;CL:0000542!5.12e-15!53;CL:0000051!5.12e-15!53;CL:0000763!1.07e-14!112;CL:0000049!1.07e-14!112;CL:0000625!4.04e-13!11;CL:0000766!1.82e-12!76;CL:0000094!7.23e-09!8;CL:0000839!8.32e-09!70;CL:0000624!1.61e-08!6;CL:0000080!1.76e-08!6;CL:0002057!2.77e-08!42;CL:0000557!5.69e-08!71;CL:0000081!9.22e-08!11;CL:0000860!2.68e-07!45;CL:0002009!7.65e-07!65 | ||
|ontology_enrichment_celltype_v019=CL:0000084;2.17e-38;25!CL:0000791;9.43e-33;18!CL:0000789;9.43e-33;18!CL:0002419;9.43e-33;18!CL:0000625;1.81e-22;11!CL:0000624;3.89e-14;6!CL:0000542;2.23e-12;53!CL:0000094;1.47e-11;8!CL:0000081;7.08e-11;11!CL:0000898;9.11e-08;3!CL:0000226;1.87e-07;3!CL:0000842;1.87e-07;3!CL:0000623;2.11e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.20e-38,25;CL:0000827,2.20e-38,25;CL:0000791,8.21e-33,18;CL:0000789,8.21e-33,18;CL:0002420,8.21e-33,18;CL:0002419,8.21e-33,18;CL:0000790,8.21e-33,18;CL:0000738,6.68e-25,136;CL:0000988,1.17e-23,177;CL:0000625,1.67e-22,11;CL:0000838,6.28e-22,52;CL:0000037,8.27e-22,168;CL:0000542,2.28e-21,53;CL:0000051,2.28e-21,53;CL:0002032,7.66e-20,161;CL:0000837,7.66e-20,161;CL:0002087,3.39e-16,115;CL:0002031,8.74e-15,120;CL:0000624,3.65e-14,6;CL:0000094,1.21e-11,8;CL:0000081,6.14e-11,11;CL:0000898,8.53e-08,3;CL:0000226,2.12e-07,3;CL:0000623,2.12e-07,3;CL:0000842,2.12e-07,3;CL:0000825,2.12e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;9.43e-33;18!CL:0000051;2.23e-12;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!8.64e-19!112;UBERON:0002390!1.66e-18!102;UBERON:0003061!1.66e-18!102;UBERON:0000178!2.42e-18!15;UBERON:0000179!2.42e-18!15;UBERON:0000463!2.42e-18!15;UBERON:0007023!5.11e-11!115 | |ontology_enrichment_uberon=UBERON:0002193!8.64e-19!112;UBERON:0002390!1.66e-18!102;UBERON:0003061!1.66e-18!102;UBERON:0000178!2.42e-18!15;UBERON:0000179!2.42e-18!15;UBERON:0000463!2.42e-18!15;UBERON:0007023!5.11e-11!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.09e-32;15!UBERON:0000179;5.09e-32;15!UBERON:0000463;5.09e-32;15!UBERON:0002390;2.37e-19;32!UBERON:0002193;8.18e-12;42!UBERON:0004177;7.85e-07;5!UBERON:0005057;7.85e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.28e-32,15;UBERON:0000179,5.28e-32,15;UBERON:0000463,5.28e-32,15;UBERON:0002193,4.07e-13,108;UBERON:0002390,4.08e-13,98;UBERON:0003061,4.08e-13,98;UBERON:0004177,1.89e-07,7;UBERON:0005057,1.89e-07,7 | |||
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| ||
|short_description=p2@CCR4 | |short_description=p2@CCR4 | ||
}} | }} |
Latest revision as of 23:46, 17 September 2015
Short description: | p2@CCR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CCR4_5end |
Coexpression cluster: | C1361_CD4_cord_mycosis_hairy_CD8_Whole_thymus |
Association with transcript: | 43bp_to_ENST00000330953, NM_005508, uc003cfg.1_5end |
EntrezGene: | CCR4 |
HGNC: | 1605 |
UniProt: | P51679A0N0Q1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.20e-38 | 25 |
pro-T cell | 2.20e-38 | 25 |
mature alpha-beta T cell | 8.21e-33 | 18 |
alpha-beta T cell | 8.21e-33 | 18 |
immature T cell | 8.21e-33 | 18 |
mature T cell | 8.21e-33 | 18 |
immature alpha-beta T cell | 8.21e-33 | 18 |
leukocyte | 6.68e-25 | 136 |
hematopoietic cell | 1.17e-23 | 177 |
CD8-positive, alpha-beta T cell | 1.67e-22 | 11 |
lymphoid lineage restricted progenitor cell | 6.28e-22 | 52 |
hematopoietic stem cell | 8.27e-22 | 168 |
lymphocyte | 2.28e-21 | 53 |
common lymphoid progenitor | 2.28e-21 | 53 |
hematopoietic oligopotent progenitor cell | 7.66e-20 | 161 |
hematopoietic multipotent progenitor cell | 7.66e-20 | 161 |
nongranular leukocyte | 3.39e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 8.74e-15 | 120 |
CD4-positive, alpha-beta T cell | 3.65e-14 | 6 |
granulocyte | 1.21e-11 | 8 |
blood cell | 6.14e-11 | 11 |
naive T cell | 8.53e-08 | 3 |
single nucleate cell | 2.12e-07 | 3 |
natural killer cell | 2.12e-07 | 3 |
mononuclear cell | 2.12e-07 | 3 |
pro-NK cell | 2.12e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 5.28e-32 | 15 |
haemolymphatic fluid | 5.28e-32 | 15 |
organism substance | 5.28e-32 | 15 |
hemolymphoid system | 4.07e-13 | 108 |
hematopoietic system | 4.08e-13 | 98 |
blood island | 4.08e-13 | 98 |
hemopoietic organ | 1.89e-07 | 7 |
immune organ | 1.89e-07 | 7 |