FFCP PHASE1:Hg19::chr3:33260283..33260346,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:33260283..33260346,-
|short_description=p1@SUSD5
|description=CAGE_peak_1_at_SUSD5_5end
|association_with_transcript=0bp_to_ENST00000412539_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26032 | |EntrezGene=26032 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29061 | |HGNC=29061 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000412539_5end | |||
|cluster_id=chr3:33260283..33260346,- | |||
|description=CAGE_peak_1_at_SUSD5_5end | |||
|id=chr3:33260283..33260346,- | |||
|ontology_enrichment_celltype=CL:0000055!1.79e-27!180;CL:0000222!1.98e-13!119;CL:0002321!6.63e-11!248;CL:0000220!9.00e-11!246;CL:0000183!7.55e-09!59;CL:0000680!9.39e-09!57;CL:0000056!9.39e-09!57;CL:0000355!9.39e-09!57;CL:0000359!1.04e-08!32;CL:0000393!6.50e-08!60;CL:0000211!6.50e-08!60;CL:0000192!1.14e-07!42;CL:0000514!1.14e-07!42;CL:0000187!1.32e-07!54;CL:0000133!4.88e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.74e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,5.38e-12,121;CL:0002321,1.25e-09,250;CL:0000359,1.50e-08,32;CL:0000680,8.18e-08,58;CL:0000056,8.18e-08,58;CL:0000355,8.18e-08,58;CL:0000133,6.38e-07,59;CL:0000192,7.26e-07,43;CL:0000514,7.26e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!2.44e-18!79;UBERON:0007798!2.44e-18!79;UBERON:0000055!3.40e-14!69;UBERON:0001981!3.78e-14!60;UBERON:0007500!3.78e-14!60;UBERON:0004537!3.78e-14!60;UBERON:0006965!3.78e-14!60;UBERON:0000477!4.96e-14!286;UBERON:0004872!1.21e-12!84;UBERON:0001009!5.27e-12!113;UBERON:0004535!8.14e-12!110;UBERON:0001637!1.27e-11!42;UBERON:0003509!1.27e-11!42;UBERON:0004572!1.27e-11!42;UBERON:0000119!1.79e-11!312;UBERON:0000033!7.57e-11!123;UBERON:0000483!1.07e-10!309;UBERON:0000914!1.45e-10!83;UBERON:0002329!1.45e-10!83;UBERON:0003077!1.45e-10!83;UBERON:0003059!1.45e-10!83;UBERON:0007282!1.45e-10!83;UBERON:0009618!1.45e-10!83;UBERON:0007285!1.45e-10!83;UBERON:0000481!2.25e-10!347;UBERON:0004121!4.51e-10!169;UBERON:0000153!6.25e-10!129;UBERON:0007811!6.25e-10!129;UBERON:0000468!8.72e-10!659;UBERON:0000025!1.08e-09!194;UBERON:0004573!1.23e-09!33;UBERON:0004571!1.23e-09!33;UBERON:0000924!1.39e-09!173;UBERON:0006601!1.39e-09!173;UBERON:0000475!1.64e-09!365;UBERON:0003914!2.27e-09!118;UBERON:0000922!2.43e-09!612;UBERON:0004111!3.18e-09!241;UBERON:0000073!4.79e-09!94;UBERON:0001016!4.79e-09!94;UBERON:0002050!1.10e-08!605;UBERON:0005423!1.10e-08!605;UBERON:0000923!1.85e-08!604;UBERON:0005291!1.85e-08!604;UBERON:0006598!1.85e-08!604;UBERON:0002532!1.85e-08!604;UBERON:0005743!2.20e-08!86;UBERON:0000467!3.05e-08!625;UBERON:0000480!4.67e-08!626;UBERON:0004290!1.16e-07!70;UBERON:0001134!1.25e-07!61;UBERON:0002036!1.25e-07!61;UBERON:0003082!1.25e-07!61;UBERON:0002385!1.39e-07!63;UBERON:0001015!1.39e-07!63;UBERON:0000383!1.39e-07!63;UBERON:0003075!1.75e-07!86;UBERON:0007284!1.75e-07!86;UBERON:0001017!1.97e-07!82;UBERON:0000955!5.37e-07!69;UBERON:0006238!5.37e-07!69;UBERON:0000486!6.46e-07!82;UBERON:0002346!7.03e-07!90;UBERON:0000947!9.95e-07!21;UBERON:0010191!9.95e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001434;2.63e-09;36!UBERON:0004573;1.65e-08;33!UBERON:0004571;1.65e-08;33!UBERON:0004765;3.31e-08;26!UBERON:0001637;4.62e-08;42!UBERON:0003509;4.62e-08;42!UBERON:0004572;4.62e-08;42!UBERON:0007500;7.61e-08;56!UBERON:0001981;7.61e-08;56!UBERON:0004537;7.61e-08;56!UBERON:0002049;7.82e-08;75!UBERON:0007798;7.82e-08;75!UBERON:0000055;1.35e-07;65 | |||
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|phase1_expression=0.908391896352783,0.856402095563933,3.66481450649525,0,4.02264984984559,4.36169262050184,0,0.631719873426831,0.522371256399677,0.737201809504527,0.697801167972428,0.218441372130172,1.58260186937072,9.2824764720035,10.9361133990212,1.34465029290355,2.41077811209591,0.730310090387373,2.92759679274304,4.55547914884115,7.54802557603736,4.38836610069323,1.14494394852423,1.36874425072884,1.88313959392204,0,0,0,0,0,0,0,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,2.55725123687061,10.1202962667679,11.0294340339896,10.718642403101,18.2915767821753,21.8985691636186,5.19941494402373,4.87804674417641,3.68906099911129,1.89919659471683,0,0.741568885568859,0,0.174129737299267,0,0,0,0,2.18638648103376,0.860234595106124,2.77712401286075,4.52246353539208,0.838998872419812,1.37559020970034,1.67195973229448,3.87625138753993,6.40379272836078,4.35136796594071,4.02829317109147,2.28081631715554,4.14905497831888,4.77962004449629,4.86085168729056,4.37568668591991,5.16417557040191,1.12611480483322,3.06633274931766,2.84779697870439,1.64881569537367,0,0,0.436094052142534,3.97577561356255,4.81195944325403,3.83986624358335,29.5441719371278,10.9947198481491,5.60677600142307,1.06748995729705,5.42668606517752,8.09148692039392,1.48181739276657,6.86539993076527,3.48122083583342,4.03323147135999,0.70296429550139,4.68240115245481,1.1409436430889,1.49448680551801,0.704606991862589,0.323745888736263,0.561803226808994,2.85815839756851,7.00155608677077,3.40975077880026,8.31602000097437,8.90160945402805,0.910161361938026,0,2.02003336744879,2.37725187756732,3.60183350129438,5.70670907145089,4.59731693698529,10.9673783001816,4.76415169272088,1.25572744982203,0.427114777637135,0,1.80054657650641,0.206105058476878,2.83404594050192,0.744467425326359,0.675105328965065,0.389748020644795,0,0.0920498986422993,0.323292113637624,2.4850671476163,0.705264687593482,1.52604533079439,0.193260853163297,0.545492241181669,0.286804595389004,1.46368447355514,1.19276791489337,1.97529702878181,1.0366105501537,1.26160425437814,1.09493207722749,0,9.64861407289328,1.38134921352481,2.3218396401599,2.88751792667834,1.41968160047813,1.85443159085912,1.68707720918437,1.54411561825352,1.74303555273925,0.949082476444386,1.34831308160164,1.17732879075208,0,1.4763109092493,0,2.8810180793198,0,0,0,0,0,0,4.80389868835872,0.109750285408626,0,0,0.277765335475589,1.3032332212413,0,5.77325368101093,2.08674728955138,3.75707821554629,1.58803092537181,0.925971025153221,3.99533719692656,0,0,0,0.234004265139238,0,0.93733833986777,1.34385702559088,0.425325291727159,2.05984602216551,0.290633938513962,1.15014803749563,0,0,0.207328115540772,0,0.12624243342638,13.4615535899398,6.49380323449072,3.51652341630141,5.13217338068116,7.50640696734262,0,6.00235508524214,7.51278265113917,2.61576041299968,7.0404754388112,1.29271715757778,0,0,1.06375246633948,3.12022310734098,9.00225809917497,5.67396528093113,10.656887160644,0.428933980974443,0,1.64648067356154,0.977208552881205,0,0,8.44030255766841,4.35766729300147,5.99837947092342,0,0,0,8.86611965318856,3.44585807502342,11.4109524032575,7.6734092533817,3.49309748335652,10.5645968311538,0,0,0,0,4.06551398755941,0,2.31986643833309,0.837581326671744,0.637938751653163,0,0,0,15.827202431769,7.50255781589516,13.5632511849868,6.44709670745502,6.24501460790066,6.62350143142526,2.22568688486155,1.80567659836631,2.27407504055985,1.03473071292505,5.31380478828349,5.53107505625109,1.12948698808508,4.89502893656851,3.43143423810856,0,0,0,0.606255142892519,0,0.604780586659361,0.496215615637554,0.767309866440312,0.280660094433074,3.33161788064823,1.53512174720011,1.93024705372329,1.48418066444991,1.23367755042124,1.06537035187876,2.95657761649713,1.55776328755086,2.20799719073923,0,0.601519410909855,0,0.68888668898764,4.55227920016793,2.22911505431021,0.902399225814824,1.23224539367064,2.35304930753057,1.46139224653261,2.95544560900052,0,2.55140557914773,5.18198198645135,0,2.98041081298238,2.50844886927427,0.509752546090077,0,2.46262230194396,0,0,1.53870075069834,9.84043937099117,7.15832468261467,0,6.40986253728404,7.09581699317057,1.14853107599234,0,0,1.64340221096607,2.31072925671967,0.921022048356777,0,0.751941714077915,1.0151168573996,1.27839941124151,1.24644849905432,0.330569830721956,0.576570202095319,1.53135254993501,0.10115778085555,0.929691098594572,24.8701753996206,4.8792608911242,2.15623506123262,0.532306030317022,8.69932992075073,4.07713282028624,2.43312307461385,4.09374206295634,9.8077621662805,1.71567174531442,2.303080121802,2.99557291623744,8.59148769400029,1.56989728039846,3.77732160924961,1.09814811894422,0.942499218765491,2.83055474202642,6.34041284692033,2.94880919367287,0.48763373908959,2.92456187557541,1.05650146756755,0.682499557039929,0.565621727814851,3.39024349860728,7.71911480964574,1.99031692572366,2.19225442626881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| ||
|short_description=p1@SUSD5 | |||
}} | }} |
Latest revision as of 00:11, 18 September 2015
Short description: | p1@SUSD5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SUSD5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000412539_5end |
EntrezGene: | SUSD5 |
HGNC: | 29061 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 5.38e-12 | 121 |
embryonic cell | 1.25e-09 | 250 |
vascular associated smooth muscle cell | 1.50e-08 | 32 |
muscle precursor cell | 8.18e-08 | 58 |
myoblast | 8.18e-08 | 58 |
multi-potent skeletal muscle stem cell | 8.18e-08 | 58 |
neurectodermal cell | 6.38e-07 | 59 |
smooth muscle cell | 7.26e-07 | 43 |
smooth muscle myoblast | 7.26e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
vasculature | 2.88e-18 | 78 |
vascular system | 2.88e-18 | 78 |
epithelial tube open at both ends | 2.82e-14 | 59 |
blood vessel | 2.82e-14 | 59 |
blood vasculature | 2.82e-14 | 59 |
vascular cord | 2.82e-14 | 59 |
vessel | 7.18e-14 | 68 |
cardiovascular system | 9.02e-13 | 109 |
circulatory system | 1.09e-12 | 112 |
splanchnic layer of lateral plate mesoderm | 1.35e-11 | 83 |
artery | 6.00e-11 | 42 |
arterial blood vessel | 6.00e-11 | 42 |
arterial system | 6.00e-11 | 42 |
systemic artery | 4.12e-09 | 33 |
systemic arterial system | 4.12e-09 | 33 |
epithelial tube | 5.73e-09 | 117 |
structure with developmental contribution from neural crest | 1.50e-08 | 132 |
cell layer | 5.15e-08 | 309 |
ectoderm-derived structure | 1.30e-07 | 171 |
ectoderm | 1.30e-07 | 171 |
presumptive ectoderm | 1.30e-07 | 171 |
tube | 1.39e-07 | 192 |
epithelium | 2.46e-07 | 306 |
dense mesenchyme tissue | 5.56e-07 | 73 |
skeletal muscle tissue | 8.49e-07 | 62 |
striated muscle tissue | 8.49e-07 | 62 |
myotome | 8.49e-07 | 62 |