FFCP PHASE1:Hg19::chr7:27170274..27170308,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3201 | |EntrezGene=3201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5105 | |HGNC=5105 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-464bp_to_ENST00000511914_5end | |association_with_transcript=-464bp_to_ENST00000511914_5end | ||
|cluster_id=chr7:27170274..27170308,- | |||
|coexpression_cluster_id=C4679 | |||
|description=CAGE_peak_3_at_HOXA4_5end | |description=CAGE_peak_3_at_HOXA4_5end | ||
|id=chr7:27170274..27170308,- | |id=chr7:27170274..27170308,- | ||
|ontology_enrichment_celltype=CL:0000222!9.68e-13!119;CL:1000497!1.87e-08!18;CL:0002518!1.87e-08!18;CL:0000213!1.07e-07!57;CL:0000215!1.07e-07!57;CL:1000449!3.80e-07!16;CL:0000076!5.12e-07!62 | |ontology_enrichment_celltype=CL:0000222!9.68e-13!119;CL:1000497!1.87e-08!18;CL:0002518!1.87e-08!18;CL:0000213!1.07e-07!57;CL:0000215!1.07e-07!57;CL:1000449!3.80e-07!16;CL:0000076!5.12e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:1000497;4.92e-11;17!CL:0002518;4.92e-11;17!CL:1000507;1.06e-09;10!CL:1000494;1.06e-09;10!CL:1000449;3.95e-08;15!CL:0000359;3.47e-07;32!CL:0002539;4.51e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,8.28e-11,17;CL:0002518,8.28e-11,17;CL:1000507,1.91e-09,10;CL:1000494,1.91e-09,10;CL:0000222,2.18e-08,121;CL:1000449,6.13e-08,15;CL:0002539,3.13e-07,10;CL:0000359,3.33e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!3.56e-13!118;UBERON:0000055!3.49e-12!69;UBERON:0009569!7.24e-12!113;UBERON:0001981!7.81e-12!60;UBERON:0007500!7.81e-12!60;UBERON:0004537!7.81e-12!60;UBERON:0006965!7.81e-12!60;UBERON:0000489!1.09e-10!32;UBERON:0002100!1.18e-09!216;UBERON:0001637!2.16e-09!42;UBERON:0003509!2.16e-09!42;UBERON:0004572!2.16e-09!42;UBERON:0002049!4.82e-09!79;UBERON:0007798!4.82e-09!79;UBERON:0002113!8.87e-09!27;UBERON:0003918!8.87e-09!27;UBERON:0005095!8.87e-09!27;UBERON:0007687!8.87e-09!27;UBERON:0004872!2.45e-08!84;UBERON:0000025!2.54e-08!194;UBERON:0003103!4.65e-08!69;UBERON:0004573!4.83e-08!33;UBERON:0004571!4.83e-08!33;UBERON:0006555!7.68e-08!17;UBERON:0005103!7.68e-08!17;UBERON:0000083!7.68e-08!17;UBERON:0009201!7.68e-08!17;UBERON:0004819!7.68e-08!17;UBERON:0006553!7.68e-08!17;UBERON:0003074!7.68e-08!17;UBERON:0003060!7.68e-08!17;UBERON:0000483!1.39e-07!309;UBERON:0001008!1.82e-07!45;UBERON:0004111!2.39e-07!241;UBERON:0000119!3.50e-07!312;UBERON:0005177!3.70e-07!107;UBERON:0004211!3.80e-07!16;UBERON:0001285!3.80e-07!16;UBERON:0007684!3.80e-07!16;UBERON:0003220!3.80e-07!16;UBERON:0004208!3.80e-07!16;UBERON:0006554!4.10e-07!44;UBERON:0000080!4.38e-07!18;UBERON:0002120!4.38e-07!18;UBERON:0004875!4.38e-07!18;UBERON:0005721!4.38e-07!18;UBERON:0005754!4.38e-07!18;UBERON:0007297!4.38e-07!18;UBERON:0000947!5.08e-07!21;UBERON:0010191!5.08e-07!21;UBERON:0002385!8.02e-07!63;UBERON:0001015!8.02e-07!63;UBERON:0000383!8.02e-07!63;UBERON:0004876!9.57e-07!20 | |ontology_enrichment_uberon=UBERON:0003914!3.56e-13!118;UBERON:0000055!3.49e-12!69;UBERON:0009569!7.24e-12!113;UBERON:0001981!7.81e-12!60;UBERON:0007500!7.81e-12!60;UBERON:0004537!7.81e-12!60;UBERON:0006965!7.81e-12!60;UBERON:0000489!1.09e-10!32;UBERON:0002100!1.18e-09!216;UBERON:0001637!2.16e-09!42;UBERON:0003509!2.16e-09!42;UBERON:0004572!2.16e-09!42;UBERON:0002049!4.82e-09!79;UBERON:0007798!4.82e-09!79;UBERON:0002113!8.87e-09!27;UBERON:0003918!8.87e-09!27;UBERON:0005095!8.87e-09!27;UBERON:0007687!8.87e-09!27;UBERON:0004872!2.45e-08!84;UBERON:0000025!2.54e-08!194;UBERON:0003103!4.65e-08!69;UBERON:0004573!4.83e-08!33;UBERON:0004571!4.83e-08!33;UBERON:0006555!7.68e-08!17;UBERON:0005103!7.68e-08!17;UBERON:0000083!7.68e-08!17;UBERON:0009201!7.68e-08!17;UBERON:0004819!7.68e-08!17;UBERON:0006553!7.68e-08!17;UBERON:0003074!7.68e-08!17;UBERON:0003060!7.68e-08!17;UBERON:0000483!1.39e-07!309;UBERON:0001008!1.82e-07!45;UBERON:0004111!2.39e-07!241;UBERON:0000119!3.50e-07!312;UBERON:0005177!3.70e-07!107;UBERON:0004211!3.80e-07!16;UBERON:0001285!3.80e-07!16;UBERON:0007684!3.80e-07!16;UBERON:0003220!3.80e-07!16;UBERON:0004208!3.80e-07!16;UBERON:0006554!4.10e-07!44;UBERON:0000080!4.38e-07!18;UBERON:0002120!4.38e-07!18;UBERON:0004875!4.38e-07!18;UBERON:0005721!4.38e-07!18;UBERON:0005754!4.38e-07!18;UBERON:0007297!4.38e-07!18;UBERON:0000947!5.08e-07!21;UBERON:0010191!5.08e-07!21;UBERON:0002385!8.02e-07!63;UBERON:0001015!8.02e-07!63;UBERON:0000383!8.02e-07!63;UBERON:0004876!9.57e-07!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0003914;1.07e-11;74!UBERON:0004211;1.06e-09;10!UBERON:0009773;1.06e-09;10!UBERON:0001231;1.06e-09;10!UBERON:0004810;1.06e-09;10!UBERON:0002113;1.02e-08;24!UBERON:0011143;1.02e-08;24!UBERON:0000489;2.81e-08;29!UBERON:0006555;3.95e-08;15!UBERON:0004819;3.95e-08;15!UBERON:0001285;3.95e-08;15!UBERON:0007684;3.95e-08;15!UBERON:0006554;8.67e-08;30!UBERON:0001008;8.67e-08;30!UBERON:0004573;1.10e-07;33!UBERON:0004571;1.10e-07;33!UBERON:0001896;2.59e-07;3!UBERON:0005290;2.59e-07;3!UBERON:0004237;4.51e-07;10!UBERON:0004695;4.51e-07;10!UBERON:0002111;4.51e-07;10!UBERON:0004178;4.51e-07;10!UBERON:0007500;5.87e-07;56!UBERON:0001981;5.87e-07;56!UBERON:0004537;5.87e-07;56!UBERON:0000025;7.27e-07;93 | |||
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| ||
|short_description=p3@HOXA4 | |short_description=p3@HOXA4 | ||
}} | }} |
Latest revision as of 01:21, 18 September 2015
Short description: | p3@HOXA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HOXA4_5end |
Coexpression cluster: | C4679_clear_Smooth_Mesothelial_Alveolar_Renal_gastric_mesothelioma |
Association with transcript: | -464bp_to_ENST00000511914_5end |
EntrezGene: | HOXA4 |
HGNC: | 5105 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 8.28e-11 | 17 |
kidney epithelial cell | 8.28e-11 | 17 |
kidney tubule cell | 1.91e-09 | 10 |
nephron tubule epithelial cell | 1.91e-09 | 10 |
mesodermal cell | 2.18e-08 | 121 |
epithelial cell of nephron | 6.13e-08 | 15 |
aortic smooth muscle cell | 3.13e-07 | 10 |
vascular associated smooth muscle cell | 3.33e-07 | 32 |