FFCP PHASE1:Hg19::chr7:27170274..27170308,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:27170274..27170308,- to FFCP PHASE1:Hg19::chr7:27170274..27170308,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3201 | |EntrezGene=3201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5105 | |HGNC=5105 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-464bp_to_ENST00000511914_5end | |||
|cluster_id=chr7:27170274..27170308,- | |||
|coexpression_cluster_id=C4679 | |||
|description=CAGE_peak_3_at_HOXA4_5end | |||
|id=chr7:27170274..27170308,- | |||
|ontology_enrichment_celltype=CL:0000222!9.68e-13!119;CL:1000497!1.87e-08!18;CL:0002518!1.87e-08!18;CL:0000213!1.07e-07!57;CL:0000215!1.07e-07!57;CL:1000449!3.80e-07!16;CL:0000076!5.12e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:1000497;4.92e-11;17!CL:0002518;4.92e-11;17!CL:1000507;1.06e-09;10!CL:1000494;1.06e-09;10!CL:1000449;3.95e-08;15!CL:0000359;3.47e-07;32!CL:0002539;4.51e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,8.28e-11,17;CL:0002518,8.28e-11,17;CL:1000507,1.91e-09,10;CL:1000494,1.91e-09,10;CL:0000222,2.18e-08,121;CL:1000449,6.13e-08,15;CL:0002539,3.13e-07,10;CL:0000359,3.33e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!3.56e-13!118;UBERON:0000055!3.49e-12!69;UBERON:0009569!7.24e-12!113;UBERON:0001981!7.81e-12!60;UBERON:0007500!7.81e-12!60;UBERON:0004537!7.81e-12!60;UBERON:0006965!7.81e-12!60;UBERON:0000489!1.09e-10!32;UBERON:0002100!1.18e-09!216;UBERON:0001637!2.16e-09!42;UBERON:0003509!2.16e-09!42;UBERON:0004572!2.16e-09!42;UBERON:0002049!4.82e-09!79;UBERON:0007798!4.82e-09!79;UBERON:0002113!8.87e-09!27;UBERON:0003918!8.87e-09!27;UBERON:0005095!8.87e-09!27;UBERON:0007687!8.87e-09!27;UBERON:0004872!2.45e-08!84;UBERON:0000025!2.54e-08!194;UBERON:0003103!4.65e-08!69;UBERON:0004573!4.83e-08!33;UBERON:0004571!4.83e-08!33;UBERON:0006555!7.68e-08!17;UBERON:0005103!7.68e-08!17;UBERON:0000083!7.68e-08!17;UBERON:0009201!7.68e-08!17;UBERON:0004819!7.68e-08!17;UBERON:0006553!7.68e-08!17;UBERON:0003074!7.68e-08!17;UBERON:0003060!7.68e-08!17;UBERON:0000483!1.39e-07!309;UBERON:0001008!1.82e-07!45;UBERON:0004111!2.39e-07!241;UBERON:0000119!3.50e-07!312;UBERON:0005177!3.70e-07!107;UBERON:0004211!3.80e-07!16;UBERON:0001285!3.80e-07!16;UBERON:0007684!3.80e-07!16;UBERON:0003220!3.80e-07!16;UBERON:0004208!3.80e-07!16;UBERON:0006554!4.10e-07!44;UBERON:0000080!4.38e-07!18;UBERON:0002120!4.38e-07!18;UBERON:0004875!4.38e-07!18;UBERON:0005721!4.38e-07!18;UBERON:0005754!4.38e-07!18;UBERON:0007297!4.38e-07!18;UBERON:0000947!5.08e-07!21;UBERON:0010191!5.08e-07!21;UBERON:0002385!8.02e-07!63;UBERON:0001015!8.02e-07!63;UBERON:0000383!8.02e-07!63;UBERON:0004876!9.57e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;1.07e-11;74!UBERON:0004211;1.06e-09;10!UBERON:0009773;1.06e-09;10!UBERON:0001231;1.06e-09;10!UBERON:0004810;1.06e-09;10!UBERON:0002113;1.02e-08;24!UBERON:0011143;1.02e-08;24!UBERON:0000489;2.81e-08;29!UBERON:0006555;3.95e-08;15!UBERON:0004819;3.95e-08;15!UBERON:0001285;3.95e-08;15!UBERON:0007684;3.95e-08;15!UBERON:0006554;8.67e-08;30!UBERON:0001008;8.67e-08;30!UBERON:0004573;1.10e-07;33!UBERON:0004571;1.10e-07;33!UBERON:0001896;2.59e-07;3!UBERON:0005290;2.59e-07;3!UBERON:0004237;4.51e-07;10!UBERON:0004695;4.51e-07;10!UBERON:0002111;4.51e-07;10!UBERON:0004178;4.51e-07;10!UBERON:0007500;5.87e-07;56!UBERON:0001981;5.87e-07;56!UBERON:0004537;5.87e-07;56!UBERON:0000025;7.27e-07;93 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,5.67e-13,117;UBERON:0007500,8.02e-12,59;UBERON:0001981,8.02e-12,59;UBERON:0004537,8.02e-12,59;UBERON:0006965,8.02e-12,59;UBERON:0000025,8.79e-11,192;UBERON:0000055,1.35e-10,68;UBERON:0004810,1.91e-09,10;UBERON:0006555,1.99e-09,16;UBERON:0004819,1.99e-09,16;UBERON:0002113,2.83e-09,26;UBERON:0003918,2.83e-09,26;UBERON:0011143,2.83e-09,26;UBERON:0005095,2.83e-09,26;UBERON:0007687,2.83e-09,26;UBERON:0001637,3.19e-09,42;UBERON:0003509,3.19e-09,42;UBERON:0004572,3.19e-09,42;UBERON:0000489,7.30e-09,31;UBERON:0002049,1.66e-08,78;UBERON:0007798,1.66e-08,78;UBERON:0009569,1.67e-08,112;UBERON:0004573,2.14e-08,33;UBERON:0004571,2.14e-08,33;UBERON:0004211,6.13e-08,15;UBERON:0009773,6.13e-08,15;UBERON:0001231,6.13e-08,15;UBERON:0001285,6.13e-08,15;UBERON:0007684,6.13e-08,15;UBERON:0004208,6.13e-08,15;UBERON:0004872,1.10e-07,83;UBERON:0001896,1.13e-07,3;UBERON:0005290,1.13e-07,3;UBERON:0010096,1.13e-07,3;UBERON:0004237,3.13e-07,10;UBERON:0004695,3.13e-07,10;UBERON:0002111,3.13e-07,10;UBERON:0004178,3.13e-07,10;UBERON:0004111,4.65e-07,240 | |||
|phase1_expression=0.181678379270557,0,0.704772020479856,0,0.893922188854576,0,0,0.631719873426831,0,5.16041266653169,0.697801167972428,0.218441372130172,0,0.123766352960047,0.331397375727916,0.672325146451775,0.602694528023977,2.19093027116212,1.95173119516203,0.246242116153576,0.408001382488506,0.940364164434263,0,0,0,0,0,0,0,0,0,0,0,0,0.542270404062111,0,0,0,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0,0,0,1.11332214173056,0,0,0,0,0,0,0,0,0.39752481473341,0,0.694281003215189,0,1.25849830862972,0.825354125820202,0.208994966536811,0.516833518338658,0.71153252537342,0.33472061276467,0.402829317109147,2.28081631715554,1.70843440283719,1.47065232138347,0.81014194788176,0.267899184852239,1.34717623575702,0.675668882899933,1.53316637465883,0,0.549605231791222,0,0,0.436094052142534,0,0,0.529636723252875,0.286836620748814,1.77334191099179,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0.298897361103602,0,0.323745888736263,0,0,0.122834317311768,0,0,0,0,1.43723628363248,0,0,0,0,0,0,0.340296549480063,0,0.640672166455702,0,0,0,0.515281080091258,0.37223371266318,0.337552664482532,0.0974370051611986,0.504867548488229,0.184099797284599,0,0.355009592516614,0.201504196455281,0.169560592310488,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0.482022059766964,0.110293972732394,0,0.237270619111097,0.134831308160164,0,0,1.4763109092493,0,0,0,0,0,0,0,0.245976877086227,0,0.548751427043128,0,0.301586917234893,0,0,0,0,0,0,0.288732895522148,0,0.190254152234598,0.790204397959275,0,0.246217006087397,0,0,0,0,0,0,0.290633938513962,0,0,0.088048434013226,0.414656231081544,0.576479813667846,0.12624243342638,0.063497894292169,0.381988425558278,1.17217447210047,1.71072446022705,0.205654985406647,0,0,0,0,0,0.387815147273333,3.57656445851882,0,0,1.04007436911366,0,0,0.532844358032199,0.428933980974443,0,0,0.325736184293735,0,0,3.01439377059586,4.35766729300147,14.8959756861265,0,0,0,0,0,0,0.289562613335158,0,0.537182889719687,0.224170287987055,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0.749007023947182,0,0,0.12269149171914,0,0,0,0,0,0.117141414992713,0,0,1.03473071292505,0,0.368738337083406,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.306923946576125,0.841980283299221,0.768834895534206,0.511707249066704,1.12597744800525,0,1.07946785661859,0.532685175939381,0.492762936082855,0,0.464841513839837,0.483437798366489,0.40101294060657,0,0,0,0,0.902399225814824,0.231046011313244,2.35304930753057,1.46139224653261,1.16106791782163,0,0.680374821106063,0.647747748306418,4.62681758070868,1.08378575017541,2.00675909541941,1.01950509218015,0,1.79099803777743,0,0,0,0,0,0.309123034943167,0.457847324091717,0.330037999682352,0.574265537996172,0.650060246036521,0,0.193341436584244,0.770243085573222,0.767518373630648,0.551346289938122,0.322260734604821,0,0.340906509664404,0.445160178233687,0,0,0,0,1.39453664789186,1.25924938732256,1.3940745403212,0,0.532306030317022,1.73986598415015,0.18532421910392,0,0,0,0.38126038784765,0.511795582622668,0.42793898803392,0.636406495851874,2.35484592059769,0,0,0.117812402345686,0.202182481573316,0,0,0,1.46228093778771,3.16950440270266,0.272999822815972,0.424216295861138,0,11.0273068709225,0,0.438450885253763,0.578775534266688,2.62357900818653,1.21746226177622,0,0.281695602532241,0,0,1.07001315444375,0,0.211107635297664,0.329294892959902,0,0,0.192444225451024,0.670302275535787,0,0.188287601553558,0,0,1.33029046061003,0.459446800413919,0,0,0,0.238231775457789,0,0,0,0,0.106824071127473,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333698283423817,0,0,0,0,0,0,0.18714054040822,0.293016358543788,0,0,1.42068073403207,0.47748896947538,0.296964680832639,0,0,0.140669416410513,0,0,0.63337622438398,1.39473591775749,0,0,1.73856760253663,0,0,0,0,0,0.591860433821602,0,0,0,0,0,0.260427761085233,0.0874599999961957,1.44999915086959,0,0,1.41832609060762,0.344743373241465,0,0,0,0.120596438625408,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.843992258112108,6.8557779426842,0.282706142867882,0.432777279484182,0.995261931078505,0.973033209536731,0.611030144933625,0.296521128680622,0.123563938946503,0,0,0.802577647298789,0,0,0,0,0.394584402849391,2.41981432097328,0,0.063186579628488,0.60129367765797,0.72581733978073,0,0,0,0,2.27687636823834,0,0,0.293977192243133,0.435296032902013,2.27144668714639,0,0,0,0.0821154570532092,1.84279131327997,0.441280633457501,0,2.19267079434801,0,0,0,0,0.640358984218058,0.19980960958213,0.144090417154106,6.87219576995494,2.9171149636534,0,0,0.471388069233591,0.407712618220842,0.523014231561666,0,0,0,0,0,1.28929632425987,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0,0.268733889946905,0.360299883542404,1.16495949527454,0.472699093843342,0.576911008668165,0.202210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| ||
|short_description=p3@HOXA4 | |||
}} | }} |
Latest revision as of 01:21, 18 September 2015
Short description: | p3@HOXA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HOXA4_5end |
Coexpression cluster: | C4679_clear_Smooth_Mesothelial_Alveolar_Renal_gastric_mesothelioma |
Association with transcript: | -464bp_to_ENST00000511914_5end |
EntrezGene: | HOXA4 |
HGNC: | 5105 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 8.28e-11 | 17 |
kidney epithelial cell | 8.28e-11 | 17 |
kidney tubule cell | 1.91e-09 | 10 |
nephron tubule epithelial cell | 1.91e-09 | 10 |
mesodermal cell | 2.18e-08 | 121 |
epithelial cell of nephron | 6.13e-08 | 15 |
aortic smooth muscle cell | 3.13e-07 | 10 |
vascular associated smooth muscle cell | 3.33e-07 | 32 |