FFCP PHASE1:Hg19::chr17:7750952..7750975,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:7750952..7750975,+
|short_description=p1@KDM6B
|description=CAGE_peak_1_at_KDM6B_5end
|association_with_transcript=88bp_to_uc002gix.2_5end
|EntrezGene=23...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23135 | |EntrezGene=23135 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29012 | |HGNC=29012 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=88bp_to_uc002gix.2_5end | |||
|cluster_id=chr17:7750952..7750975,+ | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_1_at_KDM6B_5end | |||
|id=chr17:7750952..7750975,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.34e-19!42;CL:0000860!5.20e-19!45;CL:0000766!2.45e-14!76;CL:0000557!2.24e-12!71;CL:0000738!3.24e-12!140;CL:0000839!1.89e-11!70;CL:0002009!4.74e-11!65;CL:0002031!3.96e-10!124;CL:0002194!4.14e-10!63;CL:0000576!4.14e-10!63;CL:0000040!4.14e-10!63;CL:0000559!4.14e-10!63;CL:0000988!5.86e-09!182;CL:0002087!7.43e-09!119;CL:0000763!1.23e-08!112;CL:0000049!1.23e-08!112;CL:0000037!3.10e-08!172;CL:0000566!3.10e-08!172;CL:0002032!6.41e-08!165;CL:0000837!6.41e-08!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.79e-68;33!CL:0002057;4.79e-68;33!CL:0000473;2.53e-46;39!CL:0000234;2.53e-46;39!CL:0000576;1.08e-31;48!CL:0000766;1.23e-23;69!CL:0000763;1.89e-11;100!CL:0000775;4.84e-10;3!CL:0002087;3.74e-09;104!CL:0000738;1.13e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.14e-61,42;CL:0002057,8.14e-61,42;CL:0000473,4.63e-52,48;CL:0000234,4.63e-52,48;CL:0000766,4.50e-49,72;CL:0000557,4.16e-47,67;CL:0002009,1.05e-43,61;CL:0000839,2.04e-42,66;CL:0002194,8.08e-40,59;CL:0000576,8.08e-40,59;CL:0000040,8.08e-40,59;CL:0000559,8.08e-40,59;CL:0000763,5.47e-33,108;CL:0000049,5.47e-33,108;CL:0000738,1.26e-31,136;CL:0002031,4.01e-28,120;CL:0000988,5.28e-24,177;CL:0002032,1.45e-23,161;CL:0000837,1.45e-23,161;CL:0000037,2.30e-23,168;CL:0002087,3.64e-23,115;CL:0000775,4.86e-10,3;CL:0000134,7.30e-08,354;CL:0002320,1.72e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;5.94e-45;42!CL:0000049;9.13e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.08e-14!102;UBERON:0003061!6.08e-14!102;UBERON:0002193!4.25e-12!112;UBERON:0002371!2.60e-09!80;UBERON:0001474!3.06e-09!86;UBERON:0004765!1.64e-07!101;UBERON:0001434!1.64e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.08e-10;15!UBERON:0000179;3.08e-10;15!UBERON:0000463;3.08e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.20e-50,98;UBERON:0003061,3.20e-50,98;UBERON:0002193,1.79e-44,108;UBERON:0002371,2.16e-40,76;UBERON:0001474,6.91e-39,82;UBERON:0002405,5.00e-35,93;UBERON:0004765,1.51e-34,90;UBERON:0001434,4.26e-30,100;UBERON:0003081,2.80e-20,203;UBERON:0002204,3.81e-15,167;UBERON:0000178,3.81e-10,15;UBERON:0000179,3.81e-10,15;UBERON:0000463,3.81e-10,15;UBERON:0000926,1.65e-09,315;UBERON:0004120,1.65e-09,315;UBERON:0006603,1.65e-09,315;UBERON:0002384,5.52e-07,371 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0.218441372130172,0,0,0,0.672325146451775,0,0.730310090387373,0,0,0.204000691244253,0.313454721478088,0,0,0,0.458480434487708,0.164201178899891,0.550975469195755,0.393364276848904,0.383829398097213,0.77408061658038,0,0,0.739508020333575,0.232401601740905,0.142169232487422,0,0.553995408531877,4.8130667392834,0.868043482863407,0,0,0,3.63495596948912,4.1566353805769,3.39617685662943,10.4593066607558,14.8020439687857,11.7688420940139,16.6861587546847,11.2710710872804,4.49316236788312,10.3423704220986,5.80936215225443,5.41705946377367,12.0475097307267,14.7369321031237,3.14612878223118,27.8536342057521,15.4045932996525,20.4587880255693,1.64925650093358,7.57961898962201,2.13112375266347,25.2482037606868,25.5323351111013,34.2552236947566,10.0499466102697,15.1230046341858,4.99534342821768,15.7403870684676,16.5724936194404,9.49387162322653,0.211255286311942,0,0,0.673971786878971,0.150176892841506,0.803627933485401,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0.587237189370939,1.52909291250092,0,1.68152568894461,0,0.393419540227666,1.96505381374582,0.616804496998528,0,0.32592226663359,0,1.94826728407911,0,0.294605907474837,0.443067789167242,0,0.128091319725675,0.130059347559878,0,0,0,0.444859689486181,0,0,0,0,0,0.506039384039006,0.318565414324097,0,0,0,0,0,0,0,1.00803371612366,1.60464117470104,0.434473211648397,2.43806866313962,0,0,0,0,0.289693037921647,0.795285947051099,0,0.0945348171640679,0,0.175669571386252,0.130979075497713,0.364295288292542,0.370784442784429,0,0,0.132957960518865,0.476981248610684,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0.208994966536811,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0,0,0,0,0,0.183201743930407,1.31780417436063,0,0.436094052142534,0,0.12663051166458,0,0.573673241497627,0.354668382198357,1.12135520028461,0,0.74000264525148,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0,0.122834317311768,0.309977343527296,0,0.494533858557114,0,0.718618141816238,0,0.125118519871964,0,0,0.30648779579902,0,0,0,0.213557388818567,0.211931901159562,0,0.412210116953756,0,0,0,0.0974370051611986,0,0.184099797284599,0,0,0.201504196455281,0,0,0.545492241181669,0.286804595389004,0.487894824518382,0,0.116193942869518,0.310983165046111,0.252320850875628,0.36497735907583,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0.441463099414651,0.245976877086227,0,0.219500570817251,0,0,0.555530670951178,0.325808305310325,0,0,0.231860809950154,0.117408694235822,0,0,0.190254152234598,0,0,0.246217006087397,0,0,0,0.16798212819886,0.283550194484773,0.0895585227028483,0.290633938513962,0,116.268524143443,0.176096868026452,1.24396869324463,0.720599767084807,1.2624243342638,0,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0.542621605391443,0,0,0,0,0,0,0.399891964728228,0,0.502257091432126,0,0,0,0,0.144781306667579,0.410952645100767,0,0,0.788123040807709,0.646882724578552,0.513372145118994,0.76228387266739,0,0.773288812777695,0.502548796003046,0.637938751653163,18.7251755986796,38.8909896965232,6.21623270154053,0.12269149171914,0,0.271265023699736,0,0.178428988797162,0.157702415033935,0.117141414992713,0.300946099727719,0,1.03473071292505,0,0,0.0868836144680828,0.391602314925481,0.686286847621712,0.82707210449155,1.50999940573032,0.640365346820666,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0.128139149255701,0,0.321707842287215,0,0.154209693802656,0,0,0,0,0.120859449591622,0.802025881213139,0.736647911487171,0.114814448164607,0.364182336013434,0.131124414959424,0,0.231046011313244,0.784349769176855,0,0,0,0.170093705276516,0,0,0,0.501689773854853,0,0,0,0.219259876645935,0,0,0.328014645699706,0,0.618246069886334,0.0915694648183434,0,1.14853107599234,0.650060246036521,0,0.096670718292122,0.154048617114644,0.15350367472613,0,0,0,0.0852266274161009,0.267096106940212,0.165284915360978,0.192190067365106,0.382838137483752,0.30347334256665,0.464845549297286,0,0,0,0,0,0.18532421910392,0,0,0,0,0.255897791311334,0,0,0.78494864019923,0.179872457583315,0,0,0,0,0,0,0.243713489631284,0,0.272999822815972,0,0,0.551365343546124,0,0,0.578775534266688,0,0,0,0.281695602532241,0.143411352204052,0.0982490410131212,0.35667105148125,0,0.211107635297664,0.658589785919804,0,0.349934720244983,0,0,0,0.564862804660675,0.86101074534246,1.68471475667626,0.443430153536676,0.459446800413919,1.52234282769651,0,2.27858874869665,0.476463550915578,0.822724546172388,2.59389324477087,0,3.17250070517708,0.213648142254946,0.962479855263359,0,0,0,0.213425530045242,0.637705090915289,0,0,0.211673582723883,0,0,0,0,0,0.338583555603207,0.321176150207399,0.403599414382095,0.425846237690326,0.343505344755765,0,0,0.166849141711909,0,0,0,0.270455678475983,0.33307196799782,0,0,0,0.121360521749513,0.334330152832435,0,0.23874448473769,0,0,0,0.422008249231538,0.445234820091624,0,0,0.398495976502139,0.276283915531148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| ||
|short_description=p1@KDM6B | |||
}} | }} |
Latest revision as of 01:49, 18 September 2015
Short description: | p1@KDM6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KDM6B_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 88bp_to_uc002gix.2_5end |
EntrezGene: | KDM6B |
HGNC: | 29012 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.14e-61 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.14e-61 | 42 |
defensive cell | 4.63e-52 | 48 |
phagocyte | 4.63e-52 | 48 |
myeloid leukocyte | 4.50e-49 | 72 |
granulocyte monocyte progenitor cell | 4.16e-47 | 67 |
macrophage dendritic cell progenitor | 1.05e-43 | 61 |
myeloid lineage restricted progenitor cell | 2.04e-42 | 66 |
monopoietic cell | 8.08e-40 | 59 |
monocyte | 8.08e-40 | 59 |
monoblast | 8.08e-40 | 59 |
promonocyte | 8.08e-40 | 59 |
myeloid cell | 5.47e-33 | 108 |
common myeloid progenitor | 5.47e-33 | 108 |
leukocyte | 1.26e-31 | 136 |
hematopoietic lineage restricted progenitor cell | 4.01e-28 | 120 |
hematopoietic cell | 5.28e-24 | 177 |
hematopoietic oligopotent progenitor cell | 1.45e-23 | 161 |
hematopoietic multipotent progenitor cell | 1.45e-23 | 161 |
hematopoietic stem cell | 2.30e-23 | 168 |
nongranular leukocyte | 3.64e-23 | 115 |
neutrophil | 4.86e-10 | 3 |
mesenchymal cell | 7.30e-08 | 354 |
connective tissue cell | 1.72e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.20e-50 | 98 |
blood island | 3.20e-50 | 98 |
hemolymphoid system | 1.79e-44 | 108 |
bone marrow | 2.16e-40 | 76 |
bone element | 6.91e-39 | 82 |
immune system | 5.00e-35 | 93 |
skeletal element | 1.51e-34 | 90 |
skeletal system | 4.26e-30 | 100 |
lateral plate mesoderm | 2.80e-20 | 203 |
musculoskeletal system | 3.81e-15 | 167 |
blood | 3.81e-10 | 15 |
haemolymphatic fluid | 3.81e-10 | 15 |
organism substance | 3.81e-10 | 15 |
mesoderm | 1.65e-09 | 315 |
mesoderm-derived structure | 1.65e-09 | 315 |
presumptive mesoderm | 1.65e-09 | 315 |
connective tissue | 5.52e-07 | 371 |