FFCP PHASE1:Hg19::chr3:38029462..38029495,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=50853 | |EntrezGene=50853 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30906 | |HGNC=30906 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-34bp_to_uc003chj.2_5end | |||
|cluster_id=chr3:38029462..38029495,+ | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_3_at_VILL_5end | |||
|id=chr3:38029462..38029495,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.04e-34!42;CL:0000860!8.05e-32!45;CL:0002194!3.25e-25!63;CL:0000576!3.25e-25!63;CL:0000040!3.25e-25!63;CL:0000559!3.25e-25!63;CL:0002009!3.59e-24!65;CL:0000766!1.01e-22!76;CL:0000839!7.91e-22!70;CL:0000557!2.12e-21!71;CL:0000763!1.20e-20!112;CL:0000049!1.20e-20!112;CL:0000037!2.75e-11!172;CL:0000566!2.75e-11!172;CL:0002087!3.54e-11!119;CL:0002032!1.25e-10!165;CL:0000837!1.25e-10!165;CL:0000988!4.28e-10!182;CL:0000738!7.21e-10!140;CL:0002031!8.80e-09!124;CL:0002076!2.48e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.06e-23;33!CL:0002057;1.06e-23;33!CL:0000473;3.08e-17;39!CL:0000234;3.08e-17;39!CL:0000576;2.05e-10;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.31e-21,42;CL:0002057,6.31e-21,42;CL:0000473,4.84e-18,48;CL:0000234,4.84e-18,48;CL:0002194,5.31e-14,59;CL:0000576,5.31e-14,59;CL:0000040,5.31e-14,59;CL:0000559,5.31e-14,59;CL:0002009,1.76e-13,61;CL:0000766,3.64e-13,72;CL:0000839,2.59e-12,66;CL:0000557,4.22e-12,67;CL:0000763,4.63e-11,108;CL:0000049,4.63e-11,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.00e-16;42!UBERON:0006242;1.31e-08;1!UBERON:0001045;2.09e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.96e-18!80;UBERON:0001474!3.48e-16!86;UBERON:0002390!1.81e-14!102;UBERON:0003061!1.81e-14!102;UBERON:0004765!1.47e-12!101;UBERON:0001434!1.47e-12!101;UBERON:0002193!2.10e-12!112;UBERON:0002405!5.23e-11!115;UBERON:0005409!1.23e-09!35;UBERON:0000160!2.62e-08!27;UBERON:0004119!9.34e-08!169;UBERON:0000925!9.34e-08!169;UBERON:0006595!9.34e-08!169;UBERON:0000059!1.45e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;8.77e-31;17!UBERON:0005409;1.82e-29;22!UBERON:0004921;4.37e-18;33!UBERON:0000059;3.73e-16;11!UBERON:0002108;1.08e-13;4!UBERON:0001155;5.45e-13;9!UBERON:0001154;2.09e-08;1!UBERON:0001153;2.09e-08;1!UBERON:0009854;2.09e-08;1!UBERON:0007029;4.89e-08;1!UBERON:0001555;3.02e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.20e-31,17;UBERON:0005409,6.78e-26,25;UBERON:0000059,3.67e-16,11;UBERON:0002108,1.06e-13,4;UBERON:0001155,5.45e-13,9;UBERON:0002371,1.95e-10,76;UBERON:0001474,1.58e-09,82;UBERON:0004765,1.67e-08,90;UBERON:0001154,2.02e-08,1;UBERON:0001153,2.02e-08,1;UBERON:0001045,2.02e-08,1;UBERON:0002405,3.65e-08,93;UBERON:0007029,4.41e-08,1;UBERON:0002390,1.20e-07,98;UBERON:0003061,1.20e-07,98;UBERON:0001434,1.88e-07,100;UBERON:0002193,9.40e-07,108 | |||
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| ||
|short_description=p3@VILL | |||
}} | }} |
Latest revision as of 02:48, 18 September 2015
Short description: | p3@VILL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_VILL_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | -34bp_to_uc003chj.2_5end |
EntrezGene: | VILL |
HGNC: | 30906 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.31e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.31e-21 | 42 |
defensive cell | 4.84e-18 | 48 |
phagocyte | 4.84e-18 | 48 |
monopoietic cell | 5.31e-14 | 59 |
monocyte | 5.31e-14 | 59 |
monoblast | 5.31e-14 | 59 |
promonocyte | 5.31e-14 | 59 |
macrophage dendritic cell progenitor | 1.76e-13 | 61 |
myeloid leukocyte | 3.64e-13 | 72 |
myeloid lineage restricted progenitor cell | 2.59e-12 | 66 |
granulocyte monocyte progenitor cell | 4.22e-12 | 67 |
myeloid cell | 4.63e-11 | 108 |
common myeloid progenitor | 4.63e-11 | 108 |
Ontology term | p-value | n |
---|---|---|
intestine | 8.20e-31 | 17 |
gastrointestinal system | 6.78e-26 | 25 |
large intestine | 3.67e-16 | 11 |
small intestine | 1.06e-13 | 4 |
colon | 5.45e-13 | 9 |
bone marrow | 1.95e-10 | 76 |
bone element | 1.58e-09 | 82 |
skeletal element | 1.67e-08 | 90 |
vermiform appendix | 2.02e-08 | 1 |
caecum | 2.02e-08 | 1 |
midgut | 2.02e-08 | 1 |
immune system | 3.65e-08 | 93 |
surface | 4.41e-08 | 1 |
hematopoietic system | 1.20e-07 | 98 |
blood island | 1.20e-07 | 98 |
skeletal system | 1.88e-07 | 100 |
hemolymphoid system | 9.40e-07 | 108 |