FFCP PHASE1:Hg19::chr1:43148855..43148908,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4904 | |EntrezGene=4904 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8014 | |HGNC=8014 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=28bp_to_ENST00000467957_5end | |association_with_transcript=28bp_to_ENST00000467957_5end | ||
|cluster_id=chr1:43148855..43148908,+ | |||
|coexpression_cluster_id=C14 | |coexpression_cluster_id=C14 | ||
|description=CAGE_peak_4_at_YBX1_5end | |description=CAGE_peak_4_at_YBX1_5end | ||
|id=chr1:43148855..43148908,+ | |id=chr1:43148855..43148908,+ | ||
|ontology_enrichment_celltype=CL:0000860;6.23e-17;33!CL:0002057;6.23e-17;33!CL:0000576;3.25e-12;48!CL:0000473;4.43e-12;39!CL:0000234;4.43e-12;39!CL:0000766;6.21e-10;69 | |ontology_enrichment_celltype=CL:0000860!2.88e-18!45;CL:0002057!6.41e-18!42;CL:0000839!7.79e-14!70;CL:0000557!1.19e-12!71;CL:0000766!2.49e-12!76;CL:0000988!3.36e-12!182;CL:0000763!3.72e-12!112;CL:0000049!3.72e-12!112;CL:0002009!4.22e-12!65;CL:0002031!8.68e-12!124;CL:0000037!1.07e-11!172;CL:0000566!1.07e-11!172;CL:0002194!1.28e-11!63;CL:0000576!1.28e-11!63;CL:0000040!1.28e-11!63;CL:0000559!1.28e-11!63;CL:0002032!1.41e-11!165;CL:0000837!1.41e-11!165;CL:0002087!2.24e-10!119;CL:0000738!3.21e-10!140;CL:0002320!5.78e-07!365;CL:0000134!7.84e-07!358 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;6.23e-17;33!CL:0002057;6.23e-17;33!CL:0000576;3.25e-12;48!CL:0000473;4.43e-12;39!CL:0000234;4.43e-12;39!CL:0000766;6.21e-10;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.74e-22,42;CL:0002057,1.74e-22,42;CL:0000473,3.51e-20,48;CL:0000234,3.51e-20,48;CL:0000839,2.76e-18,66;CL:0000766,2.23e-17,72;CL:0000557,1.63e-16,67;CL:0000763,1.74e-16,108;CL:0000049,1.74e-16,108;CL:0002009,8.51e-16,61;CL:0002194,1.34e-15,59;CL:0000576,1.34e-15,59;CL:0000040,1.34e-15,59;CL:0000559,1.34e-15,59;CL:0000988,4.06e-14,177;CL:0002032,4.32e-14,161;CL:0000837,4.32e-14,161;CL:0000037,5.82e-14,168;CL:0002031,2.42e-13,120;CL:0000738,9.00e-13,136;CL:0002087,3.85e-12,115 | |||
|ontology_enrichment_development_v019=CL:0002057;2.80e-16;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0000178;5.50e-13;15!UBERON:0000179;5.50e-13;15!UBERON:0000463;5.50e-13;15!UBERON:0002390;4.28e-10;32 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.16e-20!102;UBERON:0003061!3.16e-20!102;UBERON:0002193!5.55e-19!112;UBERON:0002371!2.29e-14!80;UBERON:0001474!1.95e-13!86;UBERON:0004765!4.24e-13!101;UBERON:0001434!4.24e-13!101;UBERON:0000178!5.91e-09!15;UBERON:0000179!5.91e-09!15;UBERON:0000463!5.91e-09!15;UBERON:0002405!4.67e-08!115;UBERON:0002204!6.14e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.50e-13;15!UBERON:0000179;5.50e-13;15!UBERON:0000463;5.50e-13;15!UBERON:0002390;4.28e-10;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.04e-26,98;UBERON:0003061,6.04e-26,98;UBERON:0002193,4.92e-22,108;UBERON:0002371,5.98e-18,76;UBERON:0001474,7.88e-18,82;UBERON:0004765,1.85e-15,90;UBERON:0001434,1.49e-13,100;UBERON:0002405,1.80e-13,93;UBERON:0000178,9.95e-13,15;UBERON:0000179,9.95e-13,15;UBERON:0000463,9.95e-13,15;UBERON:0003081,2.26e-08,203 | |||
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| ||
|short_description=p4@YBX1 | |short_description=p4@YBX1 | ||
}} | }} |
Latest revision as of 03:30, 18 September 2015
Short description: | p4@YBX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_YBX1_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 28bp_to_ENST00000467957_5end |
EntrezGene: | YBX1 |
HGNC: | 8014 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.74e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.74e-22 | 42 |
defensive cell | 3.51e-20 | 48 |
phagocyte | 3.51e-20 | 48 |
myeloid lineage restricted progenitor cell | 2.76e-18 | 66 |
myeloid leukocyte | 2.23e-17 | 72 |
granulocyte monocyte progenitor cell | 1.63e-16 | 67 |
myeloid cell | 1.74e-16 | 108 |
common myeloid progenitor | 1.74e-16 | 108 |
macrophage dendritic cell progenitor | 8.51e-16 | 61 |
monopoietic cell | 1.34e-15 | 59 |
monocyte | 1.34e-15 | 59 |
monoblast | 1.34e-15 | 59 |
promonocyte | 1.34e-15 | 59 |
hematopoietic cell | 4.06e-14 | 177 |
hematopoietic oligopotent progenitor cell | 4.32e-14 | 161 |
hematopoietic multipotent progenitor cell | 4.32e-14 | 161 |
hematopoietic stem cell | 5.82e-14 | 168 |
hematopoietic lineage restricted progenitor cell | 2.42e-13 | 120 |
leukocyte | 9.00e-13 | 136 |
nongranular leukocyte | 3.85e-12 | 115 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.04e-26 | 98 |
blood island | 6.04e-26 | 98 |
hemolymphoid system | 4.92e-22 | 108 |
bone marrow | 5.98e-18 | 76 |
bone element | 7.88e-18 | 82 |
skeletal element | 1.85e-15 | 90 |
skeletal system | 1.49e-13 | 100 |
immune system | 1.80e-13 | 93 |
blood | 9.95e-13 | 15 |
haemolymphatic fluid | 9.95e-13 | 15 |
organism substance | 9.95e-13 | 15 |
lateral plate mesoderm | 2.26e-08 | 203 |