FFCP PHASE1:Hg19::chr13:93879524..93879535,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr13:93879524..93879535,+
|short_description=p12@GPC6
|description=CAGE_peak_12_at_GPC6_5end
|association_with_transcript=429bp_to_ENST00000377047_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10082 | |EntrezGene=10082 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4454 | |HGNC=4454 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y625 | |UniProt=Q9Y625 | ||
|association_with_transcript=429bp_to_ENST00000377047_5end | |||
|cluster_id=chr13:93879524..93879535,+ | |||
|description=CAGE_peak_12_at_GPC6_5end | |||
|id=chr13:93879524..93879535,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.80e-12!180;CL:0000136!1.75e-07!15;CL:0000188!3.27e-07!9;CL:0000057!5.21e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000737;1.29e-19;4!CL:0000136;5.57e-16;13!CL:0000746;2.33e-12;3!CL:0000511;1.20e-09;1!CL:0002625;1.20e-09;1!CL:0000228;1.20e-09;1!CL:0000216;1.20e-09;1!CL:0002372;1.20e-09;1!CL:0000569;3.03e-09;4!CL:0002494;1.29e-08;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000737,1.07e-19,4;CL:0000136,1.03e-13,15;CL:0000746,2.27e-12,3;CL:0000513,2.27e-12,3;CL:0000511,7.50e-10,1;CL:0002625,7.50e-10,1;CL:0000216,7.50e-10,1;CL:0000228,9.70e-10,1;CL:0002372,9.70e-10,1;CL:0000569,4.78e-09,4;CL:0000011,4.78e-09,4;CL:0002494,1.59e-08,16 | |||
|ontology_enrichment_development_v019=CL:0000513;2.33e-12;3!CL:0000011;3.03e-09;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;4.45e-10;1!DOID:4549;4.45e-10;1!DOID:5861;4.45e-10;1!DOID:6496;4.45e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,4.09e-10,1;DOID:4549,4.09e-10,1;DOID:5861,4.09e-10,1;DOID:6496,4.09e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0004457!4.14e-07!12;UBERON:0000042!4.14e-07!12;UBERON:0003688!4.73e-07!6;UBERON:0002358!4.73e-07!6;UBERON:0003684!4.73e-07!6;UBERON:0001178!4.73e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;1.20e-09;1!UBERON:0001343;1.20e-09;1!UBERON:0001282;1.20e-09;1!UBERON:0009842;1.20e-09;1!UBERON:0003704;1.20e-09;1!UBERON:0004910;1.20e-09;1!UBERON:0004813;1.20e-09;1!UBERON:0001171;1.20e-09;1!UBERON:0001172;1.20e-09;1!UBERON:0002108;1.45e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,7.50e-10,1;UBERON:0001343,7.50e-10,1;UBERON:0004910,7.50e-10,1;UBERON:0005154,7.50e-10,1;UBERON:0005295,7.50e-10,1;UBERON:0004813,7.50e-10,1;UBERON:0005297,7.50e-10,1;UBERON:0005294,7.50e-10,1;UBERON:0010141,7.50e-10,1;UBERON:0005891,7.50e-10,1;UBERON:0001282,1.91e-09,1;UBERON:0009842,1.91e-09,1;UBERON:0003704,1.91e-09,1;UBERON:0001171,1.91e-09,1;UBERON:0001172,1.91e-09,1;UBERON:0002108,1.32e-07,4 | |||
|phase1_expression=0.54503513781167,0.428201047781966,0.845726424575827,1.0007329835313,0.446961094427288,0,2.53299878168311,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0.286235987131057,0.410623275218653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,1.34140171940727,0.255725123687061,0,0.50133791063589,0.869079113764942,0.795285947051099,0.973269740605272,0.283604451492204,0.221729397462564,0.263504357079378,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.794455084879313,0.573673241497627,0.354668382198357,0,0,0.98667019366864,0,0.134710672069688,0,0,0,0,0,0,0.149448680551801,0,0,0.280901613404497,0,0,0,1.18800285728205,0.494533858557114,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0.618315175430633,0,0.18611685633159,0.675105328965065,0.194874010322397,0.252433774244115,0.276149695926898,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0.310983165046111,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.514703430895577,0,0,0,0,0,0,0,0,1.40890433082986,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646358578788889,0,0,0,0,0,0,0,1.00084595560703,0,0,0,0,0.791951872933429,0.602878754119172,0.871533458600294,0,0,0,0,0,0,1.42636905040718,0,0.410952645100767,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.36807447515742,0.500170521059677,0,0.207970861530807,0.178428988797162,0,0.234282829985426,0.300946099727719,2.27407504055985,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.496215615637554,0.153461973288062,0.841980283299221,0.896974044789907,0.511707249066704,1.93024705372329,0,0.308419387605311,0.355123450626254,0.164254312027618,0.519254429183621,0,0,0,0.0920809889358963,0.459257792658427,0.546273504020151,0.393373244878272,0,0,0,0,0.316654886678627,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0,0,0.325378394664303,0.309123034943167,0.0915694648183434,0.082509499920588,0,0,1.6068392984416,0.386682873168488,0.308097234229289,0.15350367472613,0.551346289938122,0.214840489736547,0.435050081742686,0.170453254832202,0.801288320820636,0.330569830721956,0,0,0,0,0.94443704049192,0,0,0,0,0.37064843820784,0.143124886741991,0,0,0.38126038784765,0,1.71175595213568,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0.848432591722276,0,0.551365343546124,0,0,0,1.31178950409327,0.202910376962704,0,0,0,0,0,0.354761064070598,0.844430541190656,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0.223676107892416,0.166849141711909,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.796991953004279,0,0,0.102268682502155,0,0.622079175323615,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0.344743373241465,0,0.173624994933292,0,0,0,0,0,0.219385397153973,0,0,0.538651809526579,1.13942055847001,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0.234264445725339,0,0,0,0.394584402849391,0,0.30607276163049,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,2.73593992743651,0,0.411125773940253,0,0,0,0.160317640503067,0.640358984218058,0.19980960958213,0,0,0.857974989309823,0.288109595976299,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0,0,0.134366944973453,0,0,0,0.164831716762333,0,0.492137407573744,0,0,0,0.321506296930038,0.412618309791701,0,0,0,0,0,0.0788057072991982,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0.340776043570843,0.113312091520126,0.146552233678082,0,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0.544017803369474,1.0027595760908,1.22538230705385,1.96723578425883,0,0.886068179966986,0,0,0,0,0,0.968440444553616,0,0,0,0,0,0.144921028610825,0.298509605773748,0.233713309847224,0.554805861502613,0,0.251567901752575,0.889811221596536,1.14420034198462,0.756154618816195,1.08806040407946,0,0.159296767163702,0.449803112163605,0.155262956876259,0.414706207840855,0.265841714557995,0,0.450772826991655,0.380805212168795,0,0.181848659202559,0.322231671127465,0,0,0,0.686791410365586,0,0,0,0,0,0.226705925512272,0,0.244736704506468,0,0,0,0.176689145945881,0,0,0.256241518587947,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0.622077260032973,0.127894371303652,0,0.157265941855896,0.218419276384028,0.169732529954025,0,0.619678821295011,0,0.318004350653419,0,0,0,0.3062454773532,0,0,0,0,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0.535701835878287,0.336283722218824,0,0,0,0.115233987555779,0,0.0679697329768317,0,0,0,0.235479278551542,0,0,1.82631744101899,0,0,0.142953088353313,0.158013611732727,0,0,0.801711364730253,0.62164849248911,0.85359238546975,0,0,0,0.0852134047591577,0.423387050190929,0.22910686854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| ||
|short_description=p12@GPC6 | |||
}} | }} |
Latest revision as of 04:58, 18 September 2015
Short description: | p12@GPC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_GPC6_5end |
Coexpression cluster: | NA |
Association with transcript: | 429bp_to_ENST00000377047_5end |
EntrezGene: | GPC6 |
HGNC: | 4454 |
UniProt: | Q9Y625 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striated muscle cell | 1.07e-19 | 4 |
fat cell | 1.03e-13 | 15 |
cardiac muscle cell | 2.27e-12 | 3 |
cardiac muscle myoblast | 2.27e-12 | 3 |
androgen binding protein secreting cell | 7.50e-10 | 1 |
seminiferous tubule epithelial cell | 7.50e-10 | 1 |
Sertoli cell | 7.50e-10 | 1 |
multinucleate cell | 9.70e-10 | 1 |
myotube | 9.70e-10 | 1 |
cardiac mesenchymal cell | 4.78e-09 | 4 |
migratory trunk neural crest cell | 4.78e-09 | 4 |
cardiocyte | 1.59e-08 | 16 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 7.50e-10 | 1 |
seminiferous tubule of testis | 7.50e-10 | 1 |
epithelium of male gonad | 7.50e-10 | 1 |
epithelial cord | 7.50e-10 | 1 |
sex cord | 7.50e-10 | 1 |
seminiferous tubule epithelium | 7.50e-10 | 1 |
testis sex cord | 7.50e-10 | 1 |
genital ridge | 7.50e-10 | 1 |
primitive sex cord of indifferent gonad | 7.50e-10 | 1 |
coelomic epithelium | 7.50e-10 | 1 |
intralobular bile duct | 1.91e-09 | 1 |
acinus | 1.91e-09 | 1 |
intrahepatic bile duct | 1.91e-09 | 1 |
portal lobule | 1.91e-09 | 1 |
hepatic acinus | 1.91e-09 | 1 |
small intestine | 1.32e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 4.09e-10 | 1 |
extraosseous chondrosarcoma | 4.09e-10 | 1 |
myxoid chondrosarcoma | 4.09e-10 | 1 |
extraskeletal myxoid chondrosarcoma | 4.09e-10 | 1 |