FFCP PHASE1:Hg19::chr19:42806559..42806580,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5050 | |EntrezGene=5050 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8576 | |HGNC=8576 | ||
|TSSclassifier=strong | |||
|UniProt=Q15102 | |UniProt=Q15102 | ||
|association_with_transcript=215bp_to_ENST00000262890,NM_002573,uc002otg.2_5end | |association_with_transcript=215bp_to_ENST00000262890,NM_002573,uc002otg.2_5end | ||
|cluster_id=chr19:42806559..42806580,- | |||
|coexpression_cluster_id=C1824 | |||
|description=CAGE_peak_5_at_PAFAH1B3_5end | |description=CAGE_peak_5_at_PAFAH1B3_5end | ||
|id=chr19:42806559..42806580,- | |id=chr19:42806559..42806580,- | ||
|ontology_enrichment_celltype=CL:0000066!5.56e-30!254;CL:0002321!3.04e-19!248;CL:0000220!6.26e-19!246;CL:0000012!1.10e-14!682;CL:0000548!1.80e-13!679;CL:0000004!1.80e-13!679;CL:0000255!1.80e-13!679;CL:0000223!1.23e-09!59;CL:0002319!5.98e-09!25;CL:0002076!1.65e-08!43;CL:1000449!2.46e-08!16;CL:1000497!1.06e-07!18;CL:0002518!1.06e-07!18;CL:0000221!2.51e-07!71;CL:0000003!4.48e-07!722;CL:0000133!5.96e-07!59;CL:1000507!8.91e-07!12;CL:1000494!8.91e-07!12 | |ontology_enrichment_celltype=CL:0000066!5.56e-30!254;CL:0002321!3.04e-19!248;CL:0000220!6.26e-19!246;CL:0000012!1.10e-14!682;CL:0000548!1.80e-13!679;CL:0000004!1.80e-13!679;CL:0000255!1.80e-13!679;CL:0000223!1.23e-09!59;CL:0002319!5.98e-09!25;CL:0002076!1.65e-08!43;CL:1000449!2.46e-08!16;CL:1000497!1.06e-07!18;CL:0002518!1.06e-07!18;CL:0000221!2.51e-07!71;CL:0000003!4.48e-07!722;CL:0000133!5.96e-07!59;CL:1000507!8.91e-07!12;CL:1000494!8.91e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:1000449;1.06e-09;15!CL:0002319;6.50e-09;25!CL:1000497;1.56e-08;17!CL:0002518;1.56e-08;17!CL:1000507;4.99e-08;10!CL:1000494;4.99e-08;10!CL:0002681;1.18e-07;12!CL:0002584;1.18e-07;12!CL:0000082;4.85e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.23e-28,253;CL:0002321,5.76e-15,250;CL:0000223,4.36e-10,58;CL:1000449,9.98e-10,15;CL:0002319,6.89e-09,25;CL:1000497,1.16e-08,17;CL:0002518,1.16e-08,17;CL:0002076,3.05e-08,42;CL:1000507,5.51e-08,10;CL:1000494,5.51e-08,10;CL:0002681,1.07e-07,12;CL:0002584,1.07e-07,12;CL:0000082,5.89e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.07e-24!235;DOID:14566!2.61e-24!239;DOID:0050687!3.31e-16!143;DOID:0050686!1.06e-14!137;DOID:305!5.14e-13!106;DOID:2531!5.77e-07!51;DOID:0060083!5.77e-07!51 | |ontology_enrichment_disease=DOID:162!1.07e-24!235;DOID:14566!2.61e-24!239;DOID:0050687!3.31e-16!143;DOID:0050686!1.06e-14!137;DOID:305!5.14e-13!106;DOID:2531!5.77e-07!51;DOID:0060083!5.77e-07!51 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.30e-20,235;DOID:14566,9.16e-20,239;DOID:0050687,3.04e-15,143;DOID:305,2.88e-12,106;DOID:0050686,3.97e-12,137 | |||
|ontology_enrichment_uberon=UBERON:0003104!9.71e-10!238;UBERON:0009142!9.71e-10!238;UBERON:0000481!2.43e-09!347;UBERON:0004119!3.02e-09!169;UBERON:0000925!3.02e-09!169;UBERON:0006595!3.02e-09!169;UBERON:0005177!1.66e-08!107;UBERON:0004211!2.46e-08!16;UBERON:0001285!2.46e-08!16;UBERON:0007684!2.46e-08!16;UBERON:0003220!2.46e-08!16;UBERON:0004208!2.46e-08!16;UBERON:0000063!7.08e-08!97;UBERON:0002113!2.92e-07!27;UBERON:0003918!2.92e-07!27;UBERON:0005095!2.92e-07!27;UBERON:0007687!2.92e-07!27;UBERON:0006555!3.53e-07!17;UBERON:0005103!3.53e-07!17;UBERON:0000083!3.53e-07!17;UBERON:0009201!3.53e-07!17;UBERON:0004819!3.53e-07!17;UBERON:0006553!3.53e-07!17;UBERON:0003074!3.53e-07!17;UBERON:0003060!3.53e-07!17;UBERON:0001007!3.63e-07!155;UBERON:0001555!3.63e-07!155;UBERON:0007026!3.63e-07!155;UBERON:0005911!4.90e-07!82;UBERON:0000072!7.02e-07!46;UBERON:0008947!7.05e-07!38;UBERON:0003258!7.05e-07!38;UBERON:0006554!7.08e-07!44;UBERON:0009569!7.08e-07!113;UBERON:0009773!8.91e-07!12;UBERON:0001231!8.91e-07!12;UBERON:0004810!8.91e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;9.27e-12;30!UBERON:0001008;9.27e-12;30!UBERON:0005911;3.20e-10;36!UBERON:0002113;4.50e-10;24!UBERON:0011143;4.50e-10;24!UBERON:0006555;1.06e-09;15!UBERON:0004819;1.06e-09;15!UBERON:0001285;1.06e-09;15!UBERON:0007684;1.06e-09;15!UBERON:0004211;4.99e-08;10!UBERON:0009773;4.99e-08;10!UBERON:0001231;4.99e-08;10!UBERON:0004810;4.99e-08;10!UBERON:0000353;5.76e-08;15!UBERON:0000489;6.96e-08;29!UBERON:0004807;1.17e-07;22!UBERON:0001225;1.18e-07;12!UBERON:0008987;1.18e-07;12!UBERON:0000072;2.75e-07;37!UBERON:0000019;3.24e-07;19!UBERON:0000047;3.24e-07;19!UBERON:0004088;3.24e-07;19!UBERON:0010230;3.24e-07;19!UBERON:0000490;3.33e-07;33!UBERON:0004802;4.85e-07;19!UBERON:0000115;4.85e-07;19 | |||
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| ||
|short_description=p5@PAFAH1B3 | |short_description=p5@PAFAH1B3 | ||
}} | }} |
Latest revision as of 08:53, 18 September 2015
Short description: | p5@PAFAH1B3 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PAFAH1B3_5end |
Coexpression cluster: | C1824_Alveolar_nonsmall_brain_duodenum_Neurons_Renal_temporal |
Association with transcript: | 215bp_to_ENST00000262890, NM_002573, uc002otg.2_5end |
EntrezGene: | PAFAH1B3 |
HGNC: | 8576 |
UniProt: | Q15102 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.23e-28 | 253 |
embryonic cell | 5.76e-15 | 250 |
endodermal cell | 4.36e-10 | 58 |
epithelial cell of nephron | 9.98e-10 | 15 |
neural cell | 6.89e-09 | 25 |
kidney cell | 1.16e-08 | 17 |
kidney epithelial cell | 1.16e-08 | 17 |
endo-epithelial cell | 3.05e-08 | 42 |
kidney tubule cell | 5.51e-08 | 10 |
nephron tubule epithelial cell | 5.51e-08 | 10 |
kidney cortical cell | 1.07e-07 | 12 |
renal cortical epithelial cell | 1.07e-07 | 12 |
epithelial cell of lung | 5.89e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 8.76e-11 | 101 |
nephron epithelium | 9.98e-10 | 15 |
renal tubule | 9.98e-10 | 15 |
nephron tubule | 9.98e-10 | 15 |
nephron | 9.98e-10 | 15 |
uriniferous tubule | 9.98e-10 | 15 |
nephrogenic mesenchyme | 9.98e-10 | 15 |
kidney | 1.09e-08 | 26 |
kidney mesenchyme | 1.09e-08 | 26 |
upper urinary tract | 1.09e-08 | 26 |
kidney rudiment | 1.09e-08 | 26 |
kidney field | 1.09e-08 | 26 |
excretory tube | 1.13e-08 | 16 |
kidney epithelium | 1.13e-08 | 16 |
urinary system structure | 1.40e-08 | 47 |
renal system | 3.94e-08 | 48 |
nephron tubule epithelium | 5.51e-08 | 10 |
parenchyma | 7.70e-08 | 15 |
cortex of kidney | 1.07e-07 | 12 |
renal parenchyma | 1.07e-07 | 12 |
subdivision of trunk | 1.42e-07 | 112 |
endo-epithelium | 2.97e-07 | 82 |
respiratory primordium | 5.79e-07 | 38 |
endoderm of foregut | 5.79e-07 | 38 |
respiratory tract epithelium | 5.89e-07 | 19 |
lung epithelium | 5.89e-07 | 19 |
segment of respiratory tract | 6.49e-07 | 47 |
cavitated compound organ | 6.84e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.30e-20 | 235 |
disease of cellular proliferation | 9.16e-20 | 239 |
cell type cancer | 3.04e-15 | 143 |
carcinoma | 2.88e-12 | 106 |
organ system cancer | 3.97e-12 | 137 |