FFCP PHASE1:Hg19::chr2:176987485..176987496,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3235 | |EntrezGene=3235 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5140 | |HGNC=5140 | ||
|TSSclassifier=strong | |||
|UniProt=P28356 | |UniProt=P28356 | ||
|association_with_transcript=72bp_to_NM_014213,uc010zex.1_5end | |association_with_transcript=72bp_to_NM_014213,uc010zex.1_5end | ||
|cluster_id=chr2:176987485..176987496,+ | |||
|coexpression_cluster_id=C4149 | |coexpression_cluster_id=C4149 | ||
|description=CAGE_peak_3_at_HOXD9_5end | |description=CAGE_peak_3_at_HOXD9_5end | ||
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|ontology_enrichment_celltype=CL:1000449!8.02e-10!16;CL:0005020!8.97e-10!6;CL:0002138!8.97e-10!6;CL:0005022!8.97e-10!6;CL:0002681!1.33e-08!13;CL:0002584!1.33e-08!13;CL:1000497!2.08e-08!18;CL:0002518!2.08e-08!18;CL:1000507!3.77e-07!12;CL:1000494!3.77e-07!12;CL:0002078!3.94e-07!44 | |ontology_enrichment_celltype=CL:1000449!8.02e-10!16;CL:0005020!8.97e-10!6;CL:0002138!8.97e-10!6;CL:0005022!8.97e-10!6;CL:0002681!1.33e-08!13;CL:0002584!1.33e-08!13;CL:1000497!2.08e-08!18;CL:0002518!2.08e-08!18;CL:1000507!3.77e-07!12;CL:1000494!3.77e-07!12;CL:0002078!3.94e-07!44 | ||
|ontology_enrichment_celltype_v019=CL:0000333;1.04e-11;5!CL:0002138;1.44e-09;6!CL:0002144;2.69e-09;3!CL:0000346;3.10e-09;3!CL:1000428;3.10e-09;3!CL:0000511;9.08e-08;1!CL:0002625;9.08e-08;1!CL:0000216;9.08e-08;1!CL:0000313;2.49e-07;1 | |ontology_enrichment_celltype_v019=CL:0000333;1.04e-11;5!CL:0002138;1.44e-09;6!CL:0002144;2.69e-09;3!CL:0000346;3.10e-09;3!CL:1000428;3.10e-09;3!CL:0000511;9.08e-08;1!CL:0002625;9.08e-08;1!CL:0000216;9.08e-08;1!CL:0000313;2.49e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0005020,8.98e-10,6;CL:0002138,8.98e-10,6;CL:0005022,8.98e-10,6;CL:0002144,1.90e-09,3;CL:0000346,2.87e-09,3;CL:1000428,2.87e-09,3;CL:0000511,8.54e-08,1;CL:0002625,8.54e-08,1;CL:0000216,8.54e-08,1;CL:0002078,1.35e-07,45;CL:0000115,1.46e-07,36;CL:0000313,3.84e-07,1 | |||
|ontology_enrichment_development_v019=CL:0005022;1.44e-09;6 | |ontology_enrichment_development_v019=CL:0005022;1.44e-09;6 | ||
|ontology_enrichment_disease=DOID:171!1.50e-07!10;DOID:169!4.18e-07!6 | |ontology_enrichment_disease=DOID:171!1.50e-07!10;DOID:169!4.18e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:171;5.25e-10;10!DOID:169;7.70e-10;6!DOID:2152;2.49e-07;1 | |ontology_enrichment_disease_v019=DOID:171;5.25e-10;10!DOID:169;7.70e-10;6!DOID:2152;2.49e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:171,7.15e-10,10;DOID:169,1.08e-09,6;DOID:2152,3.84e-07,1 | |||
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|ontology_enrichment_uberon_v019=UBERON:0005904;2.08e-14;4!UBERON:0004909;2.05e-13;2!UBERON:0000013;1.04e-11;5!UBERON:0002410;1.04e-11;5!UBERON:0010523;2.69e-09;3!UBERON:0001915;2.69e-09;3!UBERON:0001982;2.69e-09;3!UBERON:0000412;3.10e-09;3!UBERON:0001992;3.10e-09;3!UBERON:0003135;4.64e-09;11!UBERON:0006947;5.96e-09;3!UBERON:0004054;5.96e-09;3!UBERON:0002113;8.94e-09;24!UBERON:0011143;8.94e-09;24!UBERON:0001136;9.08e-08;1!UBERON:0001343;9.08e-08;1!UBERON:0004910;9.08e-08;1!UBERON:0004813;9.08e-08;1!UBERON:0006834;2.49e-07;1!UBERON:0001000;2.49e-07;1!UBERON:0000996;2.49e-07;1!UBERON:0001301;2.49e-07;1!UBERON:0004911;2.49e-07;1!UBERON:0005352;2.49e-07;1!UBERON:0001473;2.74e-07;8!UBERON:0004536;2.74e-07;8!UBERON:0006558;2.74e-07;8!UBERON:0000489;3.66e-07;29!UBERON:0006554;6.63e-07;30!UBERON:0001008;6.63e-07;30 | |ontology_enrichment_uberon_v019=UBERON:0005904;2.08e-14;4!UBERON:0004909;2.05e-13;2!UBERON:0000013;1.04e-11;5!UBERON:0002410;1.04e-11;5!UBERON:0010523;2.69e-09;3!UBERON:0001915;2.69e-09;3!UBERON:0001982;2.69e-09;3!UBERON:0000412;3.10e-09;3!UBERON:0001992;3.10e-09;3!UBERON:0003135;4.64e-09;11!UBERON:0006947;5.96e-09;3!UBERON:0004054;5.96e-09;3!UBERON:0002113;8.94e-09;24!UBERON:0011143;8.94e-09;24!UBERON:0001136;9.08e-08;1!UBERON:0001343;9.08e-08;1!UBERON:0004910;9.08e-08;1!UBERON:0004813;9.08e-08;1!UBERON:0006834;2.49e-07;1!UBERON:0001000;2.49e-07;1!UBERON:0000996;2.49e-07;1!UBERON:0001301;2.49e-07;1!UBERON:0004911;2.49e-07;1!UBERON:0005352;2.49e-07;1!UBERON:0001473;2.74e-07;8!UBERON:0004536;2.74e-07;8!UBERON:0006558;2.74e-07;8!UBERON:0000489;3.66e-07;29!UBERON:0006554;6.63e-07;30!UBERON:0001008;6.63e-07;30 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005904,3.78e-14,4;UBERON:0004909,2.99e-13,2;UBERON:0000013,1.55e-11,5;UBERON:0002410,1.55e-11,5;UBERON:0002113,1.03e-10,26;UBERON:0003918,1.03e-10,26;UBERON:0011143,1.03e-10,26;UBERON:0005095,1.03e-10,26;UBERON:0007687,1.03e-10,26;UBERON:0010523,1.90e-09,3;UBERON:0001915,1.90e-09,3;UBERON:0001982,1.90e-09,3;UBERON:0000412,2.87e-09,3;UBERON:0001992,2.87e-09,3;UBERON:0006555,3.01e-09,16;UBERON:0004819,3.01e-09,16;UBERON:0004876,4.65e-09,11;UBERON:0003135,7.41e-09,11;UBERON:0000489,7.59e-09,31;UBERON:0006947,1.05e-08,3;UBERON:0004054,1.05e-08,3;UBERON:0001136,8.54e-08,1;UBERON:0001343,8.54e-08,1;UBERON:0004910,8.54e-08,1;UBERON:0005154,8.54e-08,1;UBERON:0005295,8.54e-08,1;UBERON:0004813,8.54e-08,1;UBERON:0005297,8.54e-08,1;UBERON:0005294,8.54e-08,1;UBERON:0010141,8.54e-08,1;UBERON:0005891,8.54e-08,1;UBERON:0000058,8.63e-08,19;UBERON:0006834,1.61e-07,1;UBERON:0001473,1.93e-07,8;UBERON:0004536,1.93e-07,8;UBERON:0006558,1.93e-07,8;UBERON:0000996,2.66e-07,1;UBERON:0005103,2.81e-07,8;UBERON:0000083,2.81e-07,8;UBERON:0009201,2.81e-07,8;UBERON:0006553,2.81e-07,8;UBERON:0003074,2.81e-07,8;UBERON:0003060,2.81e-07,8;UBERON:0001000,3.20e-07,1;UBERON:0005352,3.20e-07,1;UBERON:0004911,3.84e-07,1;UBERON:0001301,4.61e-07,1;UBERON:0001008,5.51e-07,48 | |||
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|short_description=p3@HOXD9 | |short_description=p3@HOXD9 | ||
}} | }} |
Latest revision as of 09:04, 18 September 2015
Short description: | p3@HOXD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HOXD9_5end |
Coexpression cluster: | C4149_neuroblastoma_kidney_Endothelial_uterus_Renal_smallcell_bronchogenic |
Association with transcript: | 72bp_to_NM_014213, uc010zex.1_5end |
EntrezGene: | HOXD9 |
HGNC: | 5140 |
UniProt: | P28356 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 8.98e-10 | 6 |
endothelial cell of lymphatic vessel | 8.98e-10 | 6 |
vascular lymphangioblast | 8.98e-10 | 6 |
capillary endothelial cell | 1.90e-09 | 3 |
hair follicle dermal papilla cell | 2.87e-09 | 3 |
stem cell of epidermis | 2.87e-09 | 3 |
androgen binding protein secreting cell | 8.54e-08 | 1 |
seminiferous tubule epithelial cell | 8.54e-08 | 1 |
Sertoli cell | 8.54e-08 | 1 |
meso-epithelial cell | 1.35e-07 | 45 |
endothelial cell | 1.46e-07 | 36 |
serous secreting cell | 3.84e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 7.15e-10 | 10 |
neuroendocrine tumor | 1.08e-09 | 6 |
ovary epithelial cancer | 3.84e-07 | 1 |