FFCP PHASE1:Hg19::chr17:79826893..79826913,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:79826893..79826913,- to FFCP PHASE1:Hg19::chr17:79826893..79826913,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=396 | |EntrezGene=396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=678 | |HGNC=678 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-394bp_to_BC007630_5end | |||
|cluster_id=chr17:79826893..79826913,- | |||
|description=CAGE_peak_13_at_ARHGDIA_5end | |||
|id=chr17:79826893..79826913,- | |||
|ontology_enrichment_celltype=CL:0002057!3.43e-13!42;CL:0000860!2.98e-12!45;CL:0002371!4.10e-12!591;CL:0000144!6.17e-11!625;CL:0000548!4.05e-09!679;CL:0000004!4.05e-09!679;CL:0000255!4.05e-09!679;CL:0000012!1.58e-08!682;CL:0000222!3.73e-08!119;CL:0000723!4.65e-08!436;CL:0000063!1.01e-07!578;CL:0000557!1.12e-07!71;CL:0000839!1.51e-07!70;CL:0000048!1.77e-07!430;CL:0002194!3.81e-07!63;CL:0000576!3.81e-07!63;CL:0000040!3.81e-07!63;CL:0000559!3.81e-07!63;CL:0000220!4.42e-07!246;CL:0000034!5.95e-07!444;CL:0002009!6.47e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.27e-19;33!CL:0002057;9.27e-19;33!CL:0000473;4.33e-14;39!CL:0000234;4.33e-14;39!CL:0000576;1.79e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.05e-15,42;CL:0002057,4.05e-15,42;CL:0000473,3.40e-14,48;CL:0000234,3.40e-14,48;CL:0000723,5.64e-11,433;CL:0000048,2.18e-10,427;CL:0000034,7.96e-10,441;CL:0000557,1.77e-09,67;CL:0000839,3.95e-09,66;CL:0002194,1.73e-08,59;CL:0000576,1.73e-08,59;CL:0000040,1.73e-08,59;CL:0000559,1.73e-08,59;CL:0002009,1.77e-08,61;CL:0000222,2.14e-07,121;CL:0000766,3.09e-07,72;CL:0002320,3.75e-07,361;CL:0000134,3.78e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;9.34e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.48e-10!167;UBERON:0003081!7.60e-10!216;UBERON:0002049!7.22e-09!79;UBERON:0007798!7.22e-09!79;UBERON:0000055!1.13e-08!69;UBERON:0002371!2.21e-08!80;UBERON:0001981!6.91e-08!60;UBERON:0007500!6.91e-08!60;UBERON:0004537!6.91e-08!60;UBERON:0006965!6.91e-08!60;UBERON:0004765!1.17e-07!101;UBERON:0001434!1.17e-07!101;UBERON:0000926!1.84e-07!448;UBERON:0004120!1.84e-07!448;UBERON:0006603!1.84e-07!448;UBERON:0001474!2.45e-07!86;UBERON:0002405!8.30e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,8.59e-13,203;UBERON:0000926,8.38e-12,315;UBERON:0004120,8.38e-12,315;UBERON:0006603,8.38e-12,315;UBERON:0002204,2.70e-11,167;UBERON:0002371,1.09e-10,76;UBERON:0001434,2.76e-09,100;UBERON:0001474,3.18e-09,82;UBERON:0004765,5.15e-09,90;UBERON:0002405,1.90e-08,93;UBERON:0000055,8.54e-08,68;UBERON:0007500,1.42e-07,59;UBERON:0001981,1.42e-07,59;UBERON:0004537,1.42e-07,59;UBERON:0006965,1.42e-07,59;UBERON:0002049,2.15e-07,78;UBERON:0007798,2.15e-07,78;UBERON:0002193,4.51e-07,108;UBERON:0002390,6.24e-07,98;UBERON:0003061,6.24e-07,98 | |||
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| ||
|short_description=p13@ARHGDIA | |||
}} | }} |
Latest revision as of 09:06, 18 September 2015
Short description: | p13@ARHGDIA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_ARHGDIA_5end |
Coexpression cluster: | NA |
Association with transcript: | -394bp_to_BC007630_5end |
EntrezGene: | ARHGDIA |
HGNC: | 678 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.05e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.05e-15 | 42 |
defensive cell | 3.40e-14 | 48 |
phagocyte | 3.40e-14 | 48 |
somatic stem cell | 5.64e-11 | 433 |
multi fate stem cell | 2.18e-10 | 427 |
stem cell | 7.96e-10 | 441 |
granulocyte monocyte progenitor cell | 1.77e-09 | 67 |
myeloid lineage restricted progenitor cell | 3.95e-09 | 66 |
monopoietic cell | 1.73e-08 | 59 |
monocyte | 1.73e-08 | 59 |
monoblast | 1.73e-08 | 59 |
promonocyte | 1.73e-08 | 59 |
macrophage dendritic cell progenitor | 1.77e-08 | 61 |
mesodermal cell | 2.14e-07 | 121 |
myeloid leukocyte | 3.09e-07 | 72 |
connective tissue cell | 3.75e-07 | 361 |
mesenchymal cell | 3.78e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 8.59e-13 | 203 |
mesoderm | 8.38e-12 | 315 |
mesoderm-derived structure | 8.38e-12 | 315 |
presumptive mesoderm | 8.38e-12 | 315 |
musculoskeletal system | 2.70e-11 | 167 |
bone marrow | 1.09e-10 | 76 |
skeletal system | 2.76e-09 | 100 |
bone element | 3.18e-09 | 82 |
skeletal element | 5.15e-09 | 90 |
immune system | 1.90e-08 | 93 |
vessel | 8.54e-08 | 68 |
epithelial tube open at both ends | 1.42e-07 | 59 |
blood vessel | 1.42e-07 | 59 |
blood vasculature | 1.42e-07 | 59 |
vascular cord | 1.42e-07 | 59 |
vasculature | 2.15e-07 | 78 |
vascular system | 2.15e-07 | 78 |
hemolymphoid system | 4.51e-07 | 108 |
hematopoietic system | 6.24e-07 | 98 |
blood island | 6.24e-07 | 98 |