FFCP PHASE1:Hg19::chr3:46619270..46619296,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6997 | |EntrezGene=6997 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11701 | |HGNC=11701 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=15bp_to_ENST00000471721_5end | |association_with_transcript=15bp_to_ENST00000471721_5end | ||
|cluster_id=chr3:46619270..46619296,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_1_at_TDGF1_5end | |description=CAGE_peak_1_at_TDGF1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!1.53e-19!5;CL:0000039!5.70e-09!7;CL:0000586!5.70e-09!7 | |ontology_enrichment_celltype=CL:0002322!1.53e-19!5;CL:0000039!5.70e-09!7;CL:0000586!5.70e-09!7 | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.03e-53;5!CL:0000039;2.40e-24;7!CL:0000586;2.40e-24;7!CL:0002321;9.71e-18;15!CL:0000540;8.14e-17;6!CL:0000404;8.14e-17;6!CL:0000148;3.21e-10;10!CL:0000147;1.93e-07;14 | |ontology_enrichment_celltype_v019=CL:0002322;4.03e-53;5!CL:0000039;2.40e-24;7!CL:0000586;2.40e-24;7!CL:0002321;9.71e-18;15!CL:0000540;8.14e-17;6!CL:0000404;8.14e-17;6!CL:0000148;3.21e-10;10!CL:0000147;1.93e-07;14 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.77e-53,5;CL:0000039,2.78e-24,7;CL:0000586,2.78e-24,7;CL:0000540,8.59e-17,6;CL:0000031,8.59e-17,6;CL:0000404,8.59e-17,6;CL:0000047,9.64e-13,8;CL:0000148,2.92e-10,10;CL:0000541,2.92e-10,10;CL:0000147,1.81e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.39e-26;10!UBERON:0005564;4.39e-26;10!CL:0000031;8.14e-17;6!UBERON:0004872;8.66e-14;7!UBERON:0004140;1.47e-11;1 | |ontology_enrichment_development_v019=UBERON:0009117;4.39e-26;10!UBERON:0005564;4.39e-26;10!CL:0000031;8.14e-17;6!UBERON:0004872;8.66e-14;7!UBERON:0004140;1.47e-11;1 | ||
|ontology_enrichment_disease=DOID:114!4.59e-08!2 | |ontology_enrichment_disease=DOID:114!4.59e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:3095;7.69e-12;22!DOID:2994;7.69e-12;22 | |ontology_enrichment_disease_v019=DOID:3095;7.69e-12;22!DOID:2994;7.69e-12;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,7.78e-12,22;DOID:2994,7.78e-12,22 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.06e-22!115;UBERON:0000473!1.55e-11!8;UBERON:0005743!1.89e-09!86;UBERON:0001017!6.35e-09!82;UBERON:0004177!2.08e-08!7;UBERON:0003135!2.76e-08!11;UBERON:0001049!3.45e-08!57;UBERON:0005068!3.45e-08!57;UBERON:0006241!3.45e-08!57;UBERON:0007135!3.45e-08!57;UBERON:0000073!3.52e-08!94;UBERON:0001016!3.52e-08!94;UBERON:0002616!8.06e-08!59;UBERON:0000991!1.06e-07!21;UBERON:0009196!1.06e-07!21;UBERON:0009117!1.06e-07!21;UBERON:0005564!1.06e-07!21;UBERON:0004176!2.65e-07!22;UBERON:0000955!3.23e-07!69;UBERON:0006238!3.23e-07!69;UBERON:0003080!3.37e-07!42;UBERON:0002298!4.13e-07!8 | |ontology_enrichment_uberon=UBERON:0007023!3.06e-22!115;UBERON:0000473!1.55e-11!8;UBERON:0005743!1.89e-09!86;UBERON:0001017!6.35e-09!82;UBERON:0004177!2.08e-08!7;UBERON:0003135!2.76e-08!11;UBERON:0001049!3.45e-08!57;UBERON:0005068!3.45e-08!57;UBERON:0006241!3.45e-08!57;UBERON:0007135!3.45e-08!57;UBERON:0000073!3.52e-08!94;UBERON:0001016!3.52e-08!94;UBERON:0002616!8.06e-08!59;UBERON:0000991!1.06e-07!21;UBERON:0009196!1.06e-07!21;UBERON:0009117!1.06e-07!21;UBERON:0005564!1.06e-07!21;UBERON:0004176!2.65e-07!22;UBERON:0000955!3.23e-07!69;UBERON:0006238!3.23e-07!69;UBERON:0003080!3.37e-07!42;UBERON:0002298!4.13e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.40e-21;8!UBERON:0000922;6.93e-17;49!UBERON:0003135;1.32e-15;11!UBERON:0002106;1.11e-14;3!UBERON:0000991;2.08e-12;21!UBERON:0002323;2.24e-09;45!UBERON:0004177;3.51e-09;5!UBERON:0005057;3.51e-09;5!UBERON:0003101;6.60e-08;22!UBERON:0000079;6.60e-08;22!UBERON:0002553;6.93e-07;52!UBERON:0004458;7.00e-07;48 | |ontology_enrichment_uberon_v019=UBERON:0000473;2.40e-21;8!UBERON:0000922;6.93e-17;49!UBERON:0003135;1.32e-15;11!UBERON:0002106;1.11e-14;3!UBERON:0000991;2.08e-12;21!UBERON:0002323;2.24e-09;45!UBERON:0004177;3.51e-09;5!UBERON:0005057;3.51e-09;5!UBERON:0003101;6.60e-08;22!UBERON:0000079;6.60e-08;22!UBERON:0002553;6.93e-07;52!UBERON:0004458;7.00e-07;48 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.73e-21,8;UBERON:0003135,1.45e-15,11;UBERON:0002106,1.15e-14,3;UBERON:0004854,1.15e-14,3;UBERON:0009034,1.15e-14,3;UBERON:0002095,1.15e-14,3;UBERON:0004782,1.15e-14,3;UBERON:0003281,1.15e-14,3;UBERON:0009664,1.15e-14,3;UBERON:0002296,1.15e-14,3;UBERON:0005602,1.15e-14,3;UBERON:0001179,1.15e-14,3;UBERON:0006293,1.15e-14,3;UBERON:0000991,2.26e-12,21;UBERON:0009196,2.26e-12,21;UBERON:0009117,2.26e-12,21;UBERON:0005564,2.26e-12,21;UBERON:0004176,8.34e-12,22;UBERON:0002323,2.03e-10,46;UBERON:0004458,9.68e-10,49;UBERON:0003886,8.92e-09,54;UBERON:0003101,6.91e-08,22;UBERON:0000079,6.91e-08,22;UBERON:0002553,1.09e-07,61;UBERON:0004177,8.59e-07,7;UBERON:0005057,8.59e-07,7 | |||
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| ||
|short_description=p1@TDGF1 | |short_description=p1@TDGF1 | ||
}} | }} |
Latest revision as of 11:32, 18 September 2015
Short description: | p1@TDGF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TDGF1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 15bp_to_ENST00000471721_5end |
EntrezGene: | TDGF1 |
HGNC: | 11701 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.77e-53 | 5 |
germ line cell | 2.78e-24 | 7 |
germ cell | 2.78e-24 | 7 |
neuron | 8.59e-17 | 6 |
neuroblast | 8.59e-17 | 6 |
electrically signaling cell | 8.59e-17 | 6 |
neuronal stem cell | 9.64e-13 | 8 |
melanocyte | 2.92e-10 | 10 |
melanoblast | 2.92e-10 | 10 |
pigment cell | 1.81e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
testis | 2.73e-21 | 8 |
male reproductive organ | 1.45e-15 | 11 |
spleen | 1.15e-14 | 3 |
gastrointestinal system mesentery | 1.15e-14 | 3 |
stomach region | 1.15e-14 | 3 |
mesentery | 1.15e-14 | 3 |
gastrointestinal system serosa | 1.15e-14 | 3 |
mesentery of stomach | 1.15e-14 | 3 |
gut mesentery | 1.15e-14 | 3 |
dorsal mesentery | 1.15e-14 | 3 |
dorsal mesogastrium | 1.15e-14 | 3 |
peritoneal cavity | 1.15e-14 | 3 |
spleen primordium | 1.15e-14 | 3 |
gonad | 2.26e-12 | 21 |
indifferent external genitalia | 2.26e-12 | 21 |
indifferent gonad | 2.26e-12 | 21 |
gonad primordium | 2.26e-12 | 21 |
external genitalia | 8.34e-12 | 22 |
body cavity | 2.03e-10 | 46 |
body cavity or lining | 9.68e-10 | 49 |
body cavity precursor | 8.92e-09 | 54 |
male organism | 6.91e-08 | 22 |
male reproductive system | 6.91e-08 | 22 |
anatomical cavity | 1.09e-07 | 61 |
hemopoietic organ | 8.59e-07 | 7 |
immune organ | 8.59e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.78e-12 | 22 |
germ cell cancer | 7.78e-12 | 22 |