FFCP PHASE1:Hg19::chr1:170633294..170633303,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5396 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |||
|TSSclassifier=strong | |||
|UniProt=P54821 | |||
|association_with_transcript=-9bp_to_NM_006902,NM_022716,uc001ghe.2,uc001ghf.2_5end | |||
|cluster_id=chr1:170633294..170633303,+ | |||
|coexpression_cluster_id=C851 | |||
|description=CAGE_peak_23_at_PRRX1_5end | |||
|id=chr1:170633294..170633303,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.82e-37!180;CL:0000057!1.24e-21!75;CL:0000680!4.71e-16!57;CL:0000056!4.71e-16!57;CL:0000355!4.71e-16!57;CL:0000187!9.18e-16!54;CL:0000183!7.51e-14!59;CL:0000393!1.06e-12!60;CL:0000211!1.06e-12!60;CL:0000192!7.19e-12!42;CL:0000514!7.19e-12!42;CL:0000359!1.51e-11!32;CL:0002620!8.28e-10!23;CL:0002334!4.91e-07!12;CL:0000048!8.36e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0002556;2.47e-09;6!CL:0000057;6.55e-08;73!CL:0002334;7.73e-08;12!CL:0002552;9.62e-08;5!CL:0000346;2.74e-07;3!CL:1000428;2.74e-07;3!CL:0002559;3.24e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.43e-13,76;CL:0002556,8.64e-10,6;CL:0002334,7.04e-08,12;CL:0002559,7.20e-08,5;CL:0000346,8.01e-08,3;CL:1000428,8.01e-08,3;CL:0002552,1.47e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.12e-26!83;UBERON:0002329!2.12e-26!83;UBERON:0003077!2.12e-26!83;UBERON:0003059!2.12e-26!83;UBERON:0007282!2.12e-26!83;UBERON:0009618!2.12e-26!83;UBERON:0007285!2.12e-26!83;UBERON:0004290!2.03e-23!70;UBERON:0000486!1.75e-18!82;UBERON:0002385!4.36e-18!63;UBERON:0001015!4.36e-18!63;UBERON:0000383!4.36e-18!63;UBERON:0001134!1.02e-17!61;UBERON:0002036!1.02e-17!61;UBERON:0003082!1.02e-17!61;UBERON:0000475!6.97e-16!365;UBERON:0003102!3.82e-14!95;UBERON:0005256!3.37e-13!143;UBERON:0002199!4.79e-10!45;UBERON:0002416!4.79e-10!45;UBERON:0002100!8.41e-10!216;UBERON:0000481!7.95e-09!347;UBERON:0004872!1.01e-08!84;UBERON:0002097!1.16e-08!40;UBERON:0004573!3.80e-08!33;UBERON:0004571!3.80e-08!33;UBERON:0001637!4.04e-08!42;UBERON:0003509!4.04e-08!42;UBERON:0004572!4.04e-08!42;UBERON:0000479!5.03e-08!787;UBERON:0002067!1.01e-07!9;UBERON:0004016!1.01e-07!9;UBERON:0010083!1.01e-07!9;UBERON:0000948!1.60e-07!24;UBERON:0005498!1.60e-07!24;UBERON:0004140!1.60e-07!24;UBERON:0009881!1.60e-07!24;UBERON:0004141!1.60e-07!24;UBERON:0003084!1.60e-07!24;UBERON:0007005!1.60e-07!24;UBERON:0004139!1.60e-07!24;UBERON:0004291!1.60e-07!24;UBERON:0007100!4.17e-07!27;UBERON:0001981!6.48e-07!60;UBERON:0007500!6.48e-07!60;UBERON:0004537!6.48e-07!60;UBERON:0006965!6.48e-07!60;UBERON:0000119!9.16e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0001758;2.47e-09;6!UBERON:0003672;2.47e-09;6!UBERON:0002067;4.42e-08;9!UBERON:0003129;6.23e-08;7!UBERON:0000412;2.74e-07;3!UBERON:0001992;2.74e-07;3!UBERON:0002073;3.24e-07;5!UBERON:0002384;4.65e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001758,8.64e-10,6;UBERON:0003672,8.64e-10,6;UBERON:0002329,4.80e-09,71;UBERON:0003059,4.80e-09,71;UBERON:0007282,4.80e-09,71;UBERON:0004290,4.80e-09,71;UBERON:0009618,4.80e-09,71;UBERON:0003077,7.63e-09,72;UBERON:0007285,7.63e-09,72;UBERON:0003102,8.26e-09,99;UBERON:0007524,1.20e-08,73;UBERON:0002067,2.55e-08,9;UBERON:0004016,2.55e-08,9;UBERON:0010083,2.55e-08,9;UBERON:0003129,2.57e-08,7;UBERON:0002073,7.20e-08,5;UBERON:0005086,7.20e-08,5;UBERON:0000412,8.01e-08,3;UBERON:0001992,8.01e-08,3;UBERON:0007503,9.45e-08,78;UBERON:0000486,5.69e-07,83;UBERON:0002199,6.88e-07,46;UBERON:0002416,6.88e-07,46 | |||
|phase1_expression=1.2717486548939,0.642301571672949,0.140954404095971,1.0007329835313,0,1.74467704820074,0,1.26343974685366,0.261185628199839,0,0,0,0,0.123766352960047,0.662794751455832,2.01697543935533,0.602694528023977,0.730310090387373,0.975865597581014,0.123121058076788,0.204000691244253,0.313454721478088,0.572471974262113,0.136874425072884,0.125542639594803,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0.361439152384566,2.00535164254356,0.434539556882471,1.5905718941022,0.486634870302636,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,1.98788780678127,1.13967460498122,0.264818361626438,0,1.41867352879343,1.68203280042692,0,0.49333509683432,0.622422070799533,0.404132016209064,0.326923806226917,0.151357427644931,0.576175924479999,0,0.936480230490962,1.1409436430889,0.448346041655403,1.05691048779388,0.809364721840658,1.82586048712923,1.42907919878425,0.859840221182376,1.03325781175765,5.94001428641027,3.95627086845691,0,0.718618141816238,1.68336113954066,1.50142223846357,0.831192346452549,1.75591048352335,2.14541457059314,3.60571341375832,0.340296549480063,0.717558542755448,0.640672166455702,0.211931901159562,0.600182192168805,0.92747276314595,0,1.30281799432113,1.0126579934476,1.26668106709558,0,0.368199594569197,1.61646056818812,0.355009592516614,0.906768884048762,0.67824236924195,0,0,0,0,0,0,0,0,0,1.56449532329816,1.92972281457866,2.76269842704961,1.85747171212792,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651616610620649,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23344192779897,0.43596006883328,1.10007428731425,0.129271715757778,0,0.845302752556,0,3.12022310734098,0.771622122786426,0,1.0656887160644,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,1.42636905040718,0.434343920002738,0.821905290201534,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,0,0.542530047399471,1.03985430765404,1.42743191037729,1.10391690523754,0.585707074963566,1.20378439891088,2.27407504055985,1.03473071292505,0.664225598535437,3.13427586520895,0.781952530212746,0.195801157462741,0,0,0,0,0,0,0,1.48864684691266,0.306923946576125,2.24528075546459,0.256278298511402,1.02341449813341,0.321707842287215,1.48418066444991,1.3878872442239,0.887808626565635,1.56041596426237,0,1.51073491997947,0,0,0,0.114814448164607,0.546273504020151,0.655622074797121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.206082023295445,0.0915694648183434,0,0,0,0,0.386682873168488,0.770243085573222,0.307007349452259,0.551346289938122,0.751941714077915,0.580066775656914,0.93749290157711,0.267096106940212,0,0,0,0,0.929691098594572,0.62962469366128,0.6970372701606,3.08033580176089,0,1.73986598415015,1.11194531462352,1.14499909393593,0.372158369359667,0.316379424718726,0,0.767693373934002,0.42793898803392,2.22742273548156,0.78494864019923,0.359744915166629,0,0,0.606547444719948,0,1.26377536871694,0,0,1.05650146756755,0.682499557039929,0.282810863907425,1.13008116620243,2.2054613741845,0.66343897524122,0.438450885253763,0,1.31178950409327,0.202910376962704,0.30982349809975,0.845086807596724,0.143411352204052,0.294747123039363,0,1.06428319221179,0.422215270595328,0.329294892959902,0.75894634753143,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.996239941255349,0,0,0,0,1.55519793830904,0,0,0,0.887790650732402,0,3.33410970433911,0,0.278304294485554,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0.221158519862449,0.295547618953547,0,0,0,3.00106008164809,0.113942055847001,0,0,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,1.08194319871046,0,0.265372693510018,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0,1.83241080922615,0.150323419414493,0,0,0,0,0,0,1.24807205711825,0,0,0,1.22308667769421,0,0,0,0,0.290967049465258,0,0.677942222341597,0,0.794858446811959,0.0633107959558787,0.195551382734803,0,0.426905989478705,0,0,0,0,0,0,0,0.951329442515298,0.418411385249333,0,0,0,0,0,0,0,2.23425921017803,0.916641696046735,0,0,0,1.56220020209311,0.604651252380536,0.720599767084807,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0.104909176269996,0.105600336519406,0,0,0.714695326373367,0.662091970365432,1.5256112259285,0.542999601753713,0,0,0,0,0.340776043570843,0,0,0,0.258565912723101,0.13223260174269,0,0,0.320362237703084,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.18628920882415,0,0,0,0,0,0,0,0.74627401443437,2.10341978862502,0.554805861502613,2.65164207385125,0.754703705257725,0,0,1.66354016139563,1.39893480524502,1.03498604992744,0.63718706865481,0.449803112163605,0,1.24411862352257,0.265841714557995,0.521745061811734,0,0,0,1.09109195521536,0.107410557042488,0.464033759878494,0,0,2.40376993627955,2.35724642136143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,1.84105950251841,0,0,0,0.539124056983409,0.314531883711793,0,0,1.2754495206101,0,0,0.954013051960256,0,0,0.705351887381368,0,0.192687675289379,1.41696576325585,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0.795664888465099,1.0529445968896,0.20170506870352,0,0,0,0,0,0,0.206686796501184,0.253663240775627,0,0,1.48863353516788,0.703484977438482,0,0,0,0,0,0,0,0,0.203909198930495,0,0,0,0.313972371402056,0,0,0,0,0,0.357382720883282,0,0,0.173858272302579,1.60342272946051,0,0,0.691259661814092,0.430227358820278,0.354996002191696,0.511280428554946,1.27016115057279,0,0,0,0,0,0,1.94228651156368,2.97722139883116,2.3196288626764,0.971421986118279,0,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0.297046400327086,0.4226557275834,0.679708458751268,0,0,0.199882311849858,0,0,0,0,0,0.143339583151451,0,0,0,0,0.743990036333503,0.462175628631418,0.865253124247578,0,0,0,0,0,0,0,1.21245917149183,0,0,0,1.70587185520785,0.476128862927481,0.0645889098360061,0,0,0.318235791390825,0.808468755832877,0.870866991587845,1.36893320434112,0,0.215166616178029,0.332660356546013,0,0,0,0,0,2.07810455110873,1.62758471326295,0.665756774185513,1.81146414231924,0 | |||
|short_description=p23@PRRX1 | |||
}} |
Latest revision as of 14:26, 18 September 2015
Short description: | p23@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_23_at_PRRX1_5end |
Coexpression cluster: | C851_Fibroblast_mesenchymal_Myoblast_normal_Olfactory_skeletal_Osteoblast |
Association with transcript: | -9bp_to_NM_006902, NM_022716, uc001ghe.2, uc001ghf.2_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | P54821 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.43e-13 | 76 |
fibroblast of periodontium | 8.64e-10 | 6 |
preadipocyte | 7.04e-08 | 12 |
hair follicle cell | 7.20e-08 | 5 |
hair follicle dermal papilla cell | 8.01e-08 | 3 |
stem cell of epidermis | 8.01e-08 | 3 |
fibroblast of gingiva | 1.47e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
periodontium | 8.64e-10 | 6 |
dentition | 8.64e-10 | 6 |
somite | 4.80e-09 | 71 |
presomitic mesoderm | 4.80e-09 | 71 |
presumptive segmental plate | 4.80e-09 | 71 |
dermomyotome | 4.80e-09 | 71 |
trunk paraxial mesoderm | 4.80e-09 | 71 |
paraxial mesoderm | 7.63e-09 | 72 |
presumptive paraxial mesoderm | 7.63e-09 | 72 |
surface structure | 8.26e-09 | 99 |
dense mesenchyme tissue | 1.20e-08 | 73 |
dermis | 2.55e-08 | 9 |
dermatome | 2.55e-08 | 9 |
future dermis | 2.55e-08 | 9 |
skull | 2.57e-08 | 7 |
hair follicle | 7.20e-08 | 5 |
hair follicle placode | 7.20e-08 | 5 |
dermal papilla | 8.01e-08 | 3 |
papillary layer of dermis | 8.01e-08 | 3 |
epithelial vesicle | 9.45e-08 | 78 |
multilaminar epithelium | 5.69e-07 | 83 |
integument | 6.88e-07 | 46 |
integumental system | 6.88e-07 | 46 |