FFCP PHASE1:Hg19::chr10:60144869..60144887,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr10:60144869..60144887,+
|short_description=p3@TFAM
|description=CAGE_peak_3_at_TFAM_5end
|association_with_transcript=87bp_to_ENST00000487519_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7019 | |EntrezGene=7019 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11741 | |HGNC=11741 | ||
|TSSclassifier=strong | |||
|UniProt=Q00059 | |UniProt=Q00059 | ||
|association_with_transcript=87bp_to_ENST00000487519_5end | |||
|cluster_id=chr10:60144869..60144887,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_TFAM_5end | |||
|id=chr10:60144869..60144887,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.52e-26!42;CL:0002194!4.92e-26!63;CL:0000576!4.92e-26!63;CL:0000040!4.92e-26!63;CL:0000559!4.92e-26!63;CL:0000860!9.33e-25!45;CL:0000839!1.16e-24!70;CL:0002009!1.33e-24!65;CL:0000557!5.15e-24!71;CL:0000766!2.04e-23!76;CL:0000763!2.27e-11!112;CL:0000049!2.27e-11!112;CL:0002087!2.95e-09!119;CL:0002031!9.62e-09!124;CL:0000738!3.91e-08!140;CL:0002393!6.65e-07!9;CL:0002397!6.65e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000473;7.26e-25;39!CL:0000234;7.26e-25;39!CL:0000860;9.97e-21;33!CL:0002057;9.97e-21;33!CL:0000766;1.58e-17;69!CL:0000576;1.77e-15;48!CL:0000235;3.35e-12;6!CL:0000228;1.09e-08;1!CL:0000222;1.09e-08;1!CL:0002372;1.09e-08;1!CL:0002591;1.09e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.28e-36,48;CL:0000234,1.28e-36,48;CL:0002194,1.05e-28,59;CL:0000576,1.05e-28,59;CL:0000040,1.05e-28,59;CL:0000559,1.05e-28,59;CL:0002009,1.10e-27,61;CL:0000860,2.76e-27,42;CL:0002057,2.76e-27,42;CL:0000839,2.15e-25,66;CL:0000557,5.61e-25,67;CL:0000766,4.62e-23,72;CL:0000763,1.89e-14,108;CL:0000049,1.89e-14,108;CL:0002087,2.14e-13,115;CL:0002031,1.02e-12,120;CL:0000235,3.36e-12,6;CL:0000738,7.01e-11,136;CL:0000228,8.36e-09,1;CL:0002372,8.36e-09,1;CL:0002032,9.75e-09,161;CL:0000837,9.75e-09,161;CL:0002591,1.42e-08,1;CL:0000037,2.99e-08,168;CL:0002393,9.34e-08,9;CL:0002397,9.34e-08,9;CL:0000988,1.11e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;4.30e-20;42!CL:0000049;9.17e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.67e-21!80;UBERON:0001474!6.02e-21!86;UBERON:0004765!2.51e-19!101;UBERON:0001434!2.51e-19!101;UBERON:0002390!1.20e-15!102;UBERON:0003061!1.20e-15!102;UBERON:0002193!5.02e-13!112;UBERON:0002405!6.52e-12!115;UBERON:0002204!2.27e-11!167;UBERON:0000062!2.77e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0007195;1.09e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.19e-24,76;UBERON:0001474,1.22e-22,82;UBERON:0004765,2.27e-20,90;UBERON:0002405,1.28e-19,93;UBERON:0002390,1.82e-18,98;UBERON:0003061,1.82e-18,98;UBERON:0001434,4.89e-18,100;UBERON:0002193,1.77e-16,108;UBERON:0002204,2.15e-12,167;UBERON:0007195,1.53e-08,1;UBERON:0003081,2.17e-08,203 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0.123766352960047,0.331397375727916,0.672325146451775,0,0,0.487932798790507,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0.393364276848904,0,0.464448369948228,0,0.30120591877825,0,0,0,0,1.10799081706375,0.401088894940283,1.08505435357926,0.671746422719773,0.971680998056939,0.257575567634187,0.872389432677388,1.51150377475524,0.242584061187816,0.464858073811369,1.23350366406548,1.54853185447552,0.28769239232215,1.0246428261164,0.709446689665756,0.344745680736619,3.87290810150296,1.35426486594342,0.941211697713023,0.545812300115692,0.674170453335254,1.22433556948361,0.962787081228281,0.639337125799041,0.329851300186716,1.99463657621632,0,0.580418477257168,0,1.86846674698672,0.251248665256743,1.5644487552606,0.65156653411535,0,0.736555271975129,0.949387162322653,0.845021145247767,0.637812899895131,0.419317291016752,0.22465726229299,0.150176892841506,0.32145117339416,0.855038231223746,1.19350006319454,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,1.0843174571537,1.00267582127178,0,0,0,0,0.221729397462564,0,3.20898734969396,0,0,0,0.348259474598534,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0.354668382198357,0,0,0.49333509683432,0,0.269421344139376,0,0,0.576175924479999,0,0,0.570471821544449,0.597794722207204,0,0,0,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0.45071417671979,0,0,0,0,0.300091096084402,0,0,0,0,0,0.252433774244115,0.0920498986422993,0.161646056818812,0,0,0,0.386521706326594,0,0.286804595389004,0.365921118388786,0.132529768321485,0.116193942869518,0,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0,0.984868024349589,0.468008530278475,0.297262324577456,0,0,0,0,0,0,0,0.088048434013226,0.414656231081544,0,0.37872730027914,0.825472625798197,1.14596527667483,0,0,0.411309970813294,0.600686115687835,1.71495859578347,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,2.43247561282381,3.51579964002488,4.21667878966063,0,0,1.42636905040718,0,0,0,0,0,0,0.128343036279748,0.254094624222463,0,0,0,0,0,0,0,0,0,0.271265023699736,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.213455115606889,0,0,0,0.248107807818777,0.767309866440312,0,0.256278298511402,0,0.321707842287215,0,0,0,0.0821271560138091,0,0,0,0.200506470303285,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0.650756789328606,0,0.0915694648183434,0,0,0,0,0,0,0,0,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0.190630193923825,0,0.855877976067841,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0.578775534266688,0,0.202910376962704,0.6196469961995,0,0,0,0,0,0.422215270595328,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0.106824071127473,0,0,0,0.144269212976445,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0.343505344755765,0,0,0.166849141711909,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0.568272293612826,0,0.296964680832639,0,0,0.140669416410513,0.222617410045812,0,0,0.19924798825107,0,0.251932747854276,0.102268682502155,0,0,0.0898683511473268,0,0,0,0,1.11136990144637,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0,0,0,0.227884111694002,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0.269604531922708,0,0,0,0,0.242780379534093,0,0,0,0.126373159256976,0,0,0,0,0,0,0.284609546029793,0.277349346026277,0,0,0.0870592065804026,0,0.171986032471617,0,0.219267951258557,0,0,0.176512253383001,0,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0,0,0,0,0.271808412147228,0,0.101998217636322,0,0.600420288709789,0.136905378891993,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0.223171457441873,0.0671834724867263,0,0,0,0.164831716762333,0.13480708770837,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0.364497339948148,0,0.0788057072991982,0.104909176269996,0,0.179287339332845,0,0,0,0.25426853765475,0,0,0,0,0,0.170388021785422,0,0,0,0.387848869084652,0,0.171086837884329,0,0.213574825135389,0,0,0,0.197611631897944,0,0,0,0.2506898940227,0.306345576763462,0,0.314108192500469,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0.434674820589684,0,0,0.151649117541648,0,0,0,0,0.149254802886874,0,0.554805861502613,0.378806010550178,0,0,0.457680136793847,0.151230923763239,0,0.147855149989634,0.318593534327405,0.449803112163605,0,0,0.265841714557995,0,0.601030435988874,0.380805212168795,0,0,0,0,0,0,0,0,1.26184898228651,0.57785949122191,0,0,0,0,0,0.179088841081487,0,0,0,0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| ||
|short_description=p3@TFAM | |||
}} | }} |
Latest revision as of 14:33, 18 September 2015
Short description: | p3@TFAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TFAM_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 87bp_to_ENST00000487519_5end |
EntrezGene: | TFAM |
HGNC: | 11741 |
UniProt: | Q00059 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.28e-36 | 48 |
phagocyte | 1.28e-36 | 48 |
monopoietic cell | 1.05e-28 | 59 |
monocyte | 1.05e-28 | 59 |
monoblast | 1.05e-28 | 59 |
promonocyte | 1.05e-28 | 59 |
macrophage dendritic cell progenitor | 1.10e-27 | 61 |
classical monocyte | 2.76e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.76e-27 | 42 |
myeloid lineage restricted progenitor cell | 2.15e-25 | 66 |
granulocyte monocyte progenitor cell | 5.61e-25 | 67 |
myeloid leukocyte | 4.62e-23 | 72 |
myeloid cell | 1.89e-14 | 108 |
common myeloid progenitor | 1.89e-14 | 108 |
nongranular leukocyte | 2.14e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 1.02e-12 | 120 |
macrophage | 3.36e-12 | 6 |
leukocyte | 7.01e-11 | 136 |
multinucleate cell | 8.36e-09 | 1 |
myotube | 8.36e-09 | 1 |
hematopoietic oligopotent progenitor cell | 9.75e-09 | 161 |
hematopoietic multipotent progenitor cell | 9.75e-09 | 161 |
smooth muscle cell of the pulmonary artery | 1.42e-08 | 1 |
hematopoietic stem cell | 2.99e-08 | 168 |
intermediate monocyte | 9.34e-08 | 9 |
CD14-positive, CD16-positive monocyte | 9.34e-08 | 9 |
hematopoietic cell | 1.11e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.19e-24 | 76 |
bone element | 1.22e-22 | 82 |
skeletal element | 2.27e-20 | 90 |
immune system | 1.28e-19 | 93 |
hematopoietic system | 1.82e-18 | 98 |
blood island | 1.82e-18 | 98 |
skeletal system | 4.89e-18 | 100 |
hemolymphoid system | 1.77e-16 | 108 |
musculoskeletal system | 2.15e-12 | 167 |
stroma of bone marrow | 1.53e-08 | 1 |
lateral plate mesoderm | 2.17e-08 | 203 |