FFCP PHASE1:Hg19::chr12:49579761..49579773,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7846 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=20766 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UQM3 | |||
|association_with_transcript=0bp_to_AF141348_5end | |||
|cluster_id=chr12:49579761..49579773,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_6_at_TUBA1A_5end | |||
|id=chr12:49579761..49579773,- | |||
|ontology_enrichment_celltype=CL:0000055!2.14e-13!180;CL:0000393!2.35e-10!60;CL:0000211!2.35e-10!60;CL:0000183!7.84e-09!59;CL:0000680!1.42e-08!57;CL:0000056!1.42e-08!57;CL:0000355!1.42e-08!57;CL:0000187!2.02e-08!54;CL:0000192!2.66e-08!42;CL:0000514!2.66e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000192;9.00e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,8.10e-12,61;CL:0000211,8.10e-12,61;CL:0000187,1.88e-09,55;CL:0000680,2.93e-09,58;CL:0000056,2.93e-09,58;CL:0000355,2.93e-09,58;CL:0000192,2.27e-08,43;CL:0000514,2.27e-08,43 | |||
|ontology_enrichment_development_v019=CL:0000514;9.00e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.46e-14!82;UBERON:0005743!2.57e-13!86;UBERON:0000073!4.34e-12!94;UBERON:0001016!4.34e-12!94;UBERON:0000914!1.06e-11!83;UBERON:0002329!1.06e-11!83;UBERON:0003077!1.06e-11!83;UBERON:0003059!1.06e-11!83;UBERON:0007282!1.06e-11!83;UBERON:0009618!1.06e-11!83;UBERON:0007285!1.06e-11!83;UBERON:0000955!3.96e-10!69;UBERON:0006238!3.96e-10!69;UBERON:0001049!4.59e-10!57;UBERON:0005068!4.59e-10!57;UBERON:0006241!4.59e-10!57;UBERON:0007135!4.59e-10!57;UBERON:0004290!2.64e-09!70;UBERON:0002616!2.95e-09!59;UBERON:0000119!4.69e-09!312;UBERON:0000483!9.51e-09!309;UBERON:0000025!3.69e-08!194;UBERON:0000475!4.77e-08!365;UBERON:0001134!1.04e-07!61;UBERON:0002036!1.04e-07!61;UBERON:0003082!1.04e-07!61;UBERON:0002346!2.14e-07!90;UBERON:0002020!2.66e-07!34;UBERON:0003528!2.66e-07!34;UBERON:0003075!2.91e-07!86;UBERON:0007284!2.91e-07!86;UBERON:0002385!3.08e-07!63;UBERON:0001015!3.08e-07!63;UBERON:0000383!3.08e-07!63;UBERON:0005256!3.33e-07!143;UBERON:0000924!4.21e-07!173;UBERON:0006601!4.21e-07!173;UBERON:0004121!6.27e-07!169;UBERON:0000486!8.35e-07!82;UBERON:0000468!8.71e-07!659;UBERON:0002049!8.96e-07!79;UBERON:0007798!8.96e-07!79;UBERON:0000033!9.92e-07!123 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.32e-12,78;UBERON:0007524,4.90e-12,73;UBERON:0003077,2.25e-11,72;UBERON:0007285,2.25e-11,72;UBERON:0002329,1.10e-10,71;UBERON:0003059,1.10e-10,71;UBERON:0007282,1.10e-10,71;UBERON:0004290,1.10e-10,71;UBERON:0009618,1.10e-10,71;UBERON:0000119,5.29e-10,309;UBERON:0000483,8.14e-10,306;UBERON:0001134,4.05e-09,62;UBERON:0002036,4.05e-09,62;UBERON:0003082,4.05e-09,62;UBERON:0002385,1.40e-08,64;UBERON:0001015,1.40e-08,64;UBERON:0000383,1.40e-08,64;UBERON:0005256,2.49e-08,122;UBERON:0000486,8.67e-08,83;UBERON:0000025,4.45e-07,192;UBERON:0001017,5.57e-07,81 | |||
|phase1_expression=0.54503513781167,1.2846031433459,0.140954404095971,0,0.446961094427288,2.61701557230111,0,0,0,1.22866968250754,4.18680700783456,0,1.05506791291381,0.618831764800233,0.994192127183747,2.01697543935533,5.42425075221579,3.65155045193687,1.46379839637152,1.47745269692145,2.65200898617529,1.88072832886853,2.0036519099174,3.55873505189499,2.76193807108566,0.0764134057479513,0,0,0.393364276848904,0,0.619264493264304,0,0.6024118375565,0,0.232401601740905,0,0.293600439334847,0,0,0.434021741431704,0.895661896959697,0,0,0.290796477559129,0,0.242584061187816,0,0.411167888021826,0,0,0.512321413058201,0.47296445977717,0,0.645484683583826,0,0,0.545812300115692,0,0,0,0,0.329851300186716,0.398927315243264,0.426224750532694,0,0,0,0.502497330513487,1.5644487552606,0.217188844705117,0,0,0.316462387440884,0.211255286311942,0.425208599930087,0.209658645508376,0.22465726229299,0.150176892841506,0,0,0.99458338599545,0.182664153764634,0,0,0,0,0,0,0,0,1.1384259382189,0,0,0,0.560508562981536,0,0,0.393010762749165,0,0.167186495390678,0.651844533267181,0,1.94826728407911,0,0.294605907474837,0,0,0,0,0,0,0.289803085735052,0.296573126324121,0.267540828089713,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0.236777252044017,0,0.403213486449465,0,0.289648807765598,0,1.34140171940727,0.12786256184353,0.361439152384566,0.50133791063589,0.869079113764942,0,0,0.567208902984407,3.32594096193846,1.40535657109002,0.458426764241994,0,0,0,0.174129737299267,1.59549552622638,0,0,0,0,0,1.38856200643038,0,0.838998872419812,1.10047216776027,1.46296476575767,0.258416759169329,0,0.33472061276467,1.20848795132744,1.52054421143703,4.14905497831888,0,4.86085168729056,0.0892997282840798,0.673588117878509,0.112611480483322,0,0,1.09921046358244,0,0,0,0.496971951695318,1.2663051166458,0.132409180813219,1.14734648299525,1.06400514659507,2.80338800071154,0,2.96001058100592,0,0.942974704487816,1.9615428373615,0.454072282934794,0,0,0.624320153660641,0.570471821544449,1.19558944441441,1.17434498643765,0.485618833104395,1.54495887372473,0,0.982674538494144,0.103325781175765,1.18800285728205,0.741800787835671,0.910161361938026,0,0.336672227908132,1.37630371859161,0.277064115484183,0.877955241761676,2.45190236639216,1.20190447125277,0.794025282120147,0.358779271377724,0,0,1.20036438433761,0.92747276314595,0.257640540045629,0,0.168776332241266,0.974370051611986,0.757301322732344,0.184099797284599,0.484938170456436,1.77504796258307,0.403008392910561,0.169560592310488,0,0.272746120590835,0,0.365921118388786,0.132529768321485,0.69716365721711,1.7622379352613,1.00928340350251,1.09493207722749,1.56449532329816,2.57296375277154,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,5.88034845542168,0,0,0.590789906681404,0,0,0.514703430895577,0.219500570817251,0,0.201057944823262,0,0,0,1.44331342025273,0.463721619900307,0.234817388471643,0.144366447761074,0.462985512576611,0.951270761172991,0,0,0.738651018262192,0,1.33768046059855,0,0.839910640994298,0.708875486211932,0,0,0,0,0,2.48793738648926,0.576479813667846,0.50496973370552,0.126995788584338,0.381988425558278,0,0,1.13110241973656,0,0,0.112131084345361,2.1798003441664,0.51336800074665,0.258543431515556,0,0.845302752556,1.32969058292435,2.08014873822732,0.514414748524284,0,1.0656887160644,0.142977993658148,0,0.823240336780769,0.325736184293735,0.355391948742546,0,0.301439377059586,0,0.899756920638513,2.43247561282381,0,2.10833939483032,1.19812427745791,1.14861935834114,0,0.434343920002738,1.02738161275192,0.179060963239896,0,0,0.215627574859517,0.256686072559497,0.508189248444927,2.60279707715243,14.6924874427762,5.02548796003046,23.603733811167,0.749007023947182,5.9832291840805,0.414415513436035,0.24538298343828,1.00034104211935,0,1.45579603071565,2.3195768543631,0.946214490203608,0.819989904948992,0,2.27407504055985,0,0,0.737476674166813,0.60818530127658,0,3.43143423810856,0,0,0.320182673410333,0.303127571446259,1.66435439510497,0.30239029332968,0.248107807818777,0.767309866440312,1.12264037773229,0.128139149255701,1.02341449813341,0.804269605718038,1.48418066444991,0.771048469013278,1.59805552781814,0.0821271560138091,1.55776328755086,2.20799719073923,0,1.60405176242628,0,0.574072240823034,1.27463817604702,2.09799063935079,0.451199612907412,0.924184045252977,0,0,0.527758144464379,1.13733384070897,2.2112181685947,0.215915916102139,0,0,3.01013864312912,0,0,1.11937377361089,0,0,0.256450125116389,1.31205858279882,0,0,0.27470839445503,0.165018999841176,0.574265537996172,1.95018073810956,0,0,1.07834031980251,1.07452572308291,1.24052915236078,0.107420244868274,2.17525040871343,1.02271952899321,0.712256285173899,0,0,0.127612712494584,0,1.85938219718914,0.31481234683064,0,0,0.532306030317022,0,0.37064843820784,0.572499546967965,1.48863347743867,0.632758849437452,1.5250415513906,1.02359116524534,1.28381696410176,0.318203247925937,2.35484592059769,0.359744915166629,2.47083326762449,2.23843564456804,0.808729926293264,1.58510321173008,0.842516912477962,0.48763373908959,0.974853958525138,1.05650146756755,0.272999822815972,1.27264888758341,0,0,2.65375590096488,1.31535265576129,1.15755106853338,1.9676842561399,0.608731130888112,2.478587984798,1.69017361519345,1.00387946542836,0.589494246078727,0.35667105148125,1.06428319221179,0.844430541190656,0,0.379473173765715,1.39973888097993,0,0,0,0,0.43050537267123,0,0.443430153536676,0,0.507447609232169,0,0.569647187174163,0,0,1.29694662238543,0.540031437238115,0.79312517629427,0.427296284509893,0,0,0.371606350251437,0,0,0,0,0,0.635020748171649,0.324621940274555,0.280797178113459,0.228234679033192,0,2.50634477090067,0,0,0,0,0,0,0,0,0.586164286206121,0,0,0.270455678475983,0,1.4098700508785,0,0,0.485442086998054,0.222886768554957,0.852408440419239,0,0,0,1.9882952955326,0.422008249231538,0,0,0,0.398495976502139,0.552567831062295,0.251932747854276,0.102268682502155,0,0.622079175323615,0,0,0,0.394573622547734,0,0,2.90799823828566,1.76259386507517,15.9691038400955,0.260427761085233,0,1.44999915086959,0.1137934482855,0,0,0,1.45802306691627,0.347249989866585,0.885741385813839,0.844175070377856,1.52581736317083,0.221158519862449,1.77328571372128,1.75508317723178,0.10893846351899,0,0.307801034015188,0,0,0,0,0.31900115973192,0.0915975934018623,0,1.02193298195737,0,0,0,0.19606253431774,0,0,0,1.05499032264014,0,0,0.216388639742091,0.995261931078505,0.0884575645033392,0.611030144933625,0,0.123563938946503,0.104421949505455,0.471807930864739,0,4.45102446878144,1.094728735294,0,0.242780379534093,0.394584402849391,0,22.9554571222868,0,0,0,0,0.330991955875499,0,0,0,0.277349346026277,0.173559738335131,0,0,1.22308667769421,0,0,0,0,0.193978032976839,0,2.03382666702479,0.137041924646751,0.19871461170299,0.189932387867636,0,0,0.426905989478705,0.599428828746391,0,0,0.343189995723929,0,0,0,0.271808412147228,0.941425616810999,0.305994652908965,0.288950589901519,0.600420288709789,0.547621515567972,0,0.429765441419957,0.262887354279314,0,0,0,0.599037001496973,0,0,0.0671834724867263,1.08089965062721,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0.321506296930038,0.412618309791701,2.07720169014593,0.2249738915515,0.77380195455795,0.485996453264197,0,0.157611414598396,0.104909176269996,0,0,0,0,0,0,1.62899880526114,0,4.57222304153173,0,0.164185041498678,0.340776043570843,0.113312091520126,0,0,1.80996138906171,1.71902382265497,0,0,0,0,0.828478110694391,0,0,0,0,0.544017803369474,0,0,0,0,0.886068179966986,2.19647276823534,0.751145584238999,0,0.554645257684261,0.807253238237985,0.691743174681154,0,0,0,0.235265819698172,0.936669811613763,2.46365748638403,0.74627401443437,0.934853239388898,1.10961172300523,0.947015026375446,0.754703705257725,1.77962244319307,0.228840068396924,1.05861646634267,0.777186002913902,1.33069634990671,1.11507737014592,0,0.465788870628778,0.829412415681711,1.32920857278997,0.521745061811734,0.901545653983311,0.380805212168795,2.03435366602331,0.727394636810238,0.644463342254931,0.464033759878494,1.99047944349308,2.80019435264208,1.03018711554838,1.6837474438296,0,0.192619830407303,0,0,0,0.463044948647668,0.244736704506468,0,0,0,0,0,0.506827321959218,1.53744911152768,0,0,0.138258436151731,0.584580926518165,0.132864840313363,0.327130788511688,0.327609848846413,1.47463745252232,0,0.19998739585493,0,0,0,0.184105950251841,0,0,0.255788742607303,0.431299245586727,0.157265941855896,0.218419276384028,0,1.06287460050841,0.991486114072017,0,0.318004350653419,0,1.60114149657094,2.1160556621441,0.918736432059601,0.706521476061055,0,0.798169295285756,0.615349092722265,19.661592305294,0.622415272177961,2.58361033010962,4.28308260777463,0,0,0,0,0,0,0,0.300841313397029,0.40341013740704,0,0,0,0,0.472763092328763,0.781078098613847,0.206686796501184,0.253663240775627,23.5199167877834,0,1.98484471355718,0.351742488719241,0.127762427639595,0.535701835878287,0,0,0,0.177404740325278,0.230467975111559,0.514464028312255,0.339848664884159,0.855046056317038,0.118193840883968,0,0,0.942693539496011,0,5.47895232305697,0.215927591218621,0,0.0714765441766563,0.316027223465453,0.116241425368125,0,0,0,0,0,0,0,0,0.423387050190929,0,0.62041277132864,0,0,0,0,0,0,8.11870101936739,0.971421986118279,2.33939463462106,1.59160620129095,0.237840181555137,0.11294608203896,1.75904826792687,0.452888530700021,0,1.09279780251979,1.41095188908457,0.245148321753905,0.235676547101626,5.10402014498858,0.891139200981258,9.2984260068348,0.169927114687817,0,0,0,0,0,0,0,0,1.43339583151451,0.157771562193185,0.747906392100062,15.7086248522536,1.5870805215462,2.23197010900051,0.924351257262837,0.865253124247578,0.126166424835079,0.218531143927391,0.760191006068622,0.815910637935854,0,0,0,0.227336094654718,0,1.65833887891756,0.413731983447581,0.213233981900981,0.714193294391221,0.258355639344024,0.0620747142958579,0.112131862580613,0.0636471582781649,0.202117188958219,0.435433495793923,1.36893320434112,0,0.358611026963382,0.665320713092027,0,0,0,0.0898252021065869,0,0.611207220914332,0.813792356631477,0.665756774185513,0.201273793591026,0 | |||
|short_description=p6@TUBA1A | |||
}} |
Latest revision as of 15:49, 18 September 2015
Short description: | p6@TUBA1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TUBA1A_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 0bp_to_AF141348_5end |
EntrezGene: | TUBA1A |
HGNC: | 20766 |
UniProt: | Q9UQM3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 8.10e-12 | 61 |
electrically active cell | 8.10e-12 | 61 |
muscle cell | 1.88e-09 | 55 |
muscle precursor cell | 2.93e-09 | 58 |
myoblast | 2.93e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.93e-09 | 58 |
smooth muscle cell | 2.27e-08 | 43 |
smooth muscle myoblast | 2.27e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.32e-12 | 78 |
dense mesenchyme tissue | 4.90e-12 | 73 |
paraxial mesoderm | 2.25e-11 | 72 |
presumptive paraxial mesoderm | 2.25e-11 | 72 |
somite | 1.10e-10 | 71 |
presomitic mesoderm | 1.10e-10 | 71 |
presumptive segmental plate | 1.10e-10 | 71 |
dermomyotome | 1.10e-10 | 71 |
trunk paraxial mesoderm | 1.10e-10 | 71 |
cell layer | 5.29e-10 | 309 |
epithelium | 8.14e-10 | 306 |
skeletal muscle tissue | 4.05e-09 | 62 |
striated muscle tissue | 4.05e-09 | 62 |
myotome | 4.05e-09 | 62 |
muscle tissue | 1.40e-08 | 64 |
musculature | 1.40e-08 | 64 |
musculature of body | 1.40e-08 | 64 |
trunk mesenchyme | 2.49e-08 | 122 |
multilaminar epithelium | 8.67e-08 | 83 |
tube | 4.45e-07 | 192 |
central nervous system | 5.57e-07 | 81 |