Personal tools

FFCP PHASE1:Hg19::chr21:46424517..46424530,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP|DPIdataset=robustDPI|EntrezGene=378825|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=19725|TSSclassifier=S|UniProt=|association_with_transcript=111bp_to_ENST00000422199,NR_024089,uc002zgo.2_5end|coexpression_cluster_id=C2636|description=CAGE_peak_4_at_LINC00162_5end|id=chr21:46424517..46424530,-|ontology_enrichment_celltype=CL:0002150!2.68e-09!3;CL:0000861!2.68e-09!3|ontology_enrichment_celltype_v019=CL:1001319;7.59e-08;1!CL:1000600;7.59e-08;1!CL:0002379;7.59e-08;1!CL:0002327;9.63e-08;4|ontology_enrichment_celltype_v019_2=CL:0000066,1.52e-08,253;CL:0002379,5.79e-08,1;CL:1001319,6.63e-08,1;CL:1000600,6.63e-08,1;CL:0002327,8.71e-08,4|ontology_enrichment_development_v019=UBERON:0008947;9.25e-18;29!UBERON:0005425;3.57e-08;1|ontology_enrichment_disease=DOID:162!2.77e-10!235;DOID:14566!7.47e-10!239;DOID:305!1.15e-09!106;DOID:0050687!2.57e-09!143|ontology_enrichment_disease_v019=DOID:3620;7.59e-08;1!DOID:3565;7.59e-08;1|ontology_enrichment_disease_v019_2=DOID:162,3.89e-13,235;DOID:305,4.76e-13,106;DOID:14566,9.14e-13,239;DOID:0050687,1.07e-11,143;DOID:3620,5.79e-08,1;DOID:3565,5.79e-08,1|ontology_enrichment_uberon=UBERON:0001737!9.34e-26!9;UBERON:0001557!1.06e-13!19;UBERON:0004732!1.74e-08!13;UBERON:0008947!4.04e-08!38;UBERON:0003258!4.04e-08!38;UBERON:0003076!4.38e-07!15;UBERON:0003057!4.38e-07!15;UBERON:0001041!7.02e-07!98;UBERON:0000063!7.96e-07!97|ontology_enrichment_uberon_v019=UBERON:0001737;2.56e-60;9!UBERON:0001557;2.56e-60;9!UBERON:0000072;7.00e-13;37!UBERON:0000065;7.67e-11;44!UBERON:0000941;3.57e-08;1!UBERON:0001785;3.57e-08;1!UBERON:0002464;3.57e-08;1!UBERON:0004904;3.57e-08;1!UBERON:0001021;3.57e-08;1!UBERON:0004645;7.59e-08;1!UBERON:0001256;7.59e-08;1!UBERON:0001259;7.59e-08;1!UBERON:0001911;9.63e-08;4!UBERON:0001004;6.01e-07;65|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.96e-60,9;UBERON:0001557,3.29e-34,19;UBERON:0008947,3.09e-13,38;UBERON:0003258,3.09e-13,38;UBERON:0000072,8.24e-13,47;UBERON:0000065,6.30e-11,54;UBERON:0000941,3.11e-08,1;UBERON:0001785,3.11e-08,1;UBERON:0002464,3.11e-08,1;UBERON:0004904,3.11e-08,1;UBERON:0001021,3.11e-08,1;UBERON:0003902,3.11e-08,1;UBERON:0005425,3.11e-08,1;UBERON:0004645,6.63e-08,1;UBERON:0001256,6.63e-08,1;UBERON:0001259,6.63e-08,1;UBERON:0001911,8.71e-08,4;UBERON:0005333,8.71e-08,4;UBERON:0008425,8.71e-08,4;UBERON:0005311,8.71e-08,4;UBERON:0001004,1.63e-07,74|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869079113764942,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,1.38856200643038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413303124703062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0.721879481669586,5.08719240171329,2.69735504124963,2.16909926895134,2.53676137284506,3.7039505495709,1.89816495288877,3.37078270400411,2.94332197688019,5.38646019724947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88072897675981,5.23141089325132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,0,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96089234334182,0,0,0,0,0,0,0.638002319463839,0.549585560411174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0,0,0,0,0,0,1.32930774541437,0.661983911750998,0.313932918407225,0,0,0,0,0.783939179315021,0,0,0,1.45134496933628,1.97341156132701,1.39596276990456,0,0,0,3.83717389010903,0,0,0.391102765469606,0,0,0.999048047910651,0,0,0,0,3.60332353139754,0,0,0,0,0.866851769704557,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.316801009558219,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0.113312091520126,0,0,0.258565912723101,0,0,0,0,0,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.558867626472451,0,0,0,0,1.88212655758537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.465788870628778,0,0.265841714557995,0,2.85489457094715,1.52322084867518,0,0,1.18151612746737,0,0,0.400027764663154,0,0,0,0,0,0.782982875895635,2.493765180635,0,1.22368352253234,0,0,0.438568099157414,0.883445729729405,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85538840518309,0,0,0,1.27078232765372,0,0,0,0,3.22728109925632,0,0,0,0.443568258651136,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0.785233868459781,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79087190944144,1.06727345877715,0,0,0,0,0,0,0,0|short_description=p4@LINC00162}}
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=378825
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA
|HGNC=19725
|TSSclassifier=strong
|UniProt=
|association_with_transcript=111bp_to_ENST00000422199,NR_024089,uc002zgo.2_5end
|cluster_id=chr21:46424517..46424530,-
|coexpression_cluster_id=C2636
|description=CAGE_peak_4_at_LINC00162_5end
|id=chr21:46424517..46424530,-
|ontology_enrichment_celltype=CL:0002150!2.68e-09!3;CL:0000861!2.68e-09!3
|ontology_enrichment_celltype_v019=CL:1001319;7.59e-08;1!CL:1000600;7.59e-08;1!CL:0002379;7.59e-08;1!CL:0002327;9.63e-08;4
|ontology_enrichment_celltype_v019_2=CL:0000066,1.52e-08,253;CL:0002379,5.79e-08,1;CL:1001319,6.63e-08,1;CL:1000600,6.63e-08,1;CL:0002327,8.71e-08,4
|ontology_enrichment_development_v019=UBERON:0008947;9.25e-18;29!UBERON:0005425;3.57e-08;1
|ontology_enrichment_disease=DOID:162!2.77e-10!235;DOID:14566!7.47e-10!239;DOID:305!1.15e-09!106;DOID:0050687!2.57e-09!143
|ontology_enrichment_disease_v019=DOID:3620;7.59e-08;1!DOID:3565;7.59e-08;1
|ontology_enrichment_disease_v019_2=DOID:162,3.89e-13,235;DOID:305,4.76e-13,106;DOID:14566,9.14e-13,239;DOID:0050687,1.07e-11,143;DOID:3620,5.79e-08,1;DOID:3565,5.79e-08,1
|ontology_enrichment_uberon=UBERON:0001737!9.34e-26!9;UBERON:0001557!1.06e-13!19;UBERON:0004732!1.74e-08!13;UBERON:0008947!4.04e-08!38;UBERON:0003258!4.04e-08!38;UBERON:0003076!4.38e-07!15;UBERON:0003057!4.38e-07!15;UBERON:0001041!7.02e-07!98;UBERON:0000063!7.96e-07!97
|ontology_enrichment_uberon_v019=UBERON:0001737;2.56e-60;9!UBERON:0001557;2.56e-60;9!UBERON:0000072;7.00e-13;37!UBERON:0000065;7.67e-11;44!UBERON:0000941;3.57e-08;1!UBERON:0001785;3.57e-08;1!UBERON:0002464;3.57e-08;1!UBERON:0004904;3.57e-08;1!UBERON:0001021;3.57e-08;1!UBERON:0004645;7.59e-08;1!UBERON:0001256;7.59e-08;1!UBERON:0001259;7.59e-08;1!UBERON:0001911;9.63e-08;4!UBERON:0001004;6.01e-07;65
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.96e-60,9;UBERON:0001557,3.29e-34,19;UBERON:0008947,3.09e-13,38;UBERON:0003258,3.09e-13,38;UBERON:0000072,8.24e-13,47;UBERON:0000065,6.30e-11,54;UBERON:0000941,3.11e-08,1;UBERON:0001785,3.11e-08,1;UBERON:0002464,3.11e-08,1;UBERON:0004904,3.11e-08,1;UBERON:0001021,3.11e-08,1;UBERON:0003902,3.11e-08,1;UBERON:0005425,3.11e-08,1;UBERON:0004645,6.63e-08,1;UBERON:0001256,6.63e-08,1;UBERON:0001259,6.63e-08,1;UBERON:0001911,8.71e-08,4;UBERON:0005333,8.71e-08,4;UBERON:0008425,8.71e-08,4;UBERON:0005311,8.71e-08,4;UBERON:0001004,1.63e-07,74
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869079113764942,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,1.38856200643038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413303124703062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0.721879481669586,5.08719240171329,2.69735504124963,2.16909926895134,2.53676137284506,3.7039505495709,1.89816495288877,3.37078270400411,2.94332197688019,5.38646019724947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88072897675981,5.23141089325132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,0,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96089234334182,0,0,0,0,0,0,0.638002319463839,0.549585560411174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0,0,0,0,0,0,1.32930774541437,0.661983911750998,0.313932918407225,0,0,0,0,0.783939179315021,0,0,0,1.45134496933628,1.97341156132701,1.39596276990456,0,0,0,3.83717389010903,0,0,0.391102765469606,0,0,0.999048047910651,0,0,0,0,3.60332353139754,0,0,0,0,0.866851769704557,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.316801009558219,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0.113312091520126,0,0,0.258565912723101,0,0,0,0,0,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.558867626472451,0,0,0,0,1.88212655758537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.465788870628778,0,0.265841714557995,0,2.85489457094715,1.52322084867518,0,0,1.18151612746737,0,0,0.400027764663154,0,0,0,0,0,0.782982875895635,2.493765180635,0,1.22368352253234,0,0,0.438568099157414,0.883445729729405,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85538840518309,0,0,0,1.27078232765372,0,0,0,0,3.22728109925632,0,0,0,0.443568258651136,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0.785233868459781,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79087190944144,1.06727345877715,0,0,0,0,0,0,0,0
|short_description=p4@LINC00162
}}

Latest revision as of 20:22, 18 September 2015

Short description:p4@LINC00162
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_4_at_LINC00162_5end
Coexpression cluster:C2636_Hep2_Mammary_cervical_mesenchymal_mesothelioma_giant_pagetoid
Association with transcript: 111bp_to_ENST00000422199, NR_024089, uc002zgo.2_5end
EntrezGene:LINC00162
HGNC: 19725
UniProt: NA
Genome view:ZENBU


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression




0
1
2
3
4
5
6




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data