FFCP PHASE1:Hg19::chrX:10588516..10588552,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:10588516..10588552,-
|short_description=p2@MID1
|description=CAGE_peak_2_at_MID1_5end
|association_with_transcript=-57bp_to_ENST00000380782_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4281 | |EntrezGene=4281 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7095 | |HGNC=7095 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-57bp_to_ENST00000380782_5end | |||
|cluster_id=chrX:10588516..10588552,- | |||
|description=CAGE_peak_2_at_MID1_5end | |||
|id=chrX:10588516..10588552,- | |||
|ontology_enrichment_celltype=CL:0000055!1.14e-26!180;CL:0002321!1.22e-13!248;CL:0000220!6.89e-13!246;CL:0000393!1.09e-09!60;CL:0000211!1.09e-09!60;CL:0000057!4.19e-09!75;CL:0000066!4.22e-09!254;CL:0000680!2.34e-08!57;CL:0000056!2.34e-08!57;CL:0000355!2.34e-08!57;CL:0000187!3.38e-08!54;CL:0000183!2.04e-07!59;CL:0000133!2.64e-07!59;CL:0000075!5.90e-07!27 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.07e-12,250;CL:0000393,4.13e-10,61;CL:0000211,4.13e-10,61;CL:0000187,1.59e-08,55;CL:0000680,1.89e-08,58;CL:0000056,1.89e-08,58;CL:0000355,1.89e-08,58;CL:0000057,2.46e-08,76;CL:0000133,4.99e-07,59;CL:0000066,5.95e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.32e-08;29 | |||
|ontology_enrichment_disease=DOID:0050687!3.45e-07!143;DOID:305!4.70e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!1.27e-21!347;UBERON:0000468!1.25e-17!659;UBERON:0000475!1.06e-15!365;UBERON:0003104!3.80e-15!238;UBERON:0009142!3.80e-15!238;UBERON:0001007!1.38e-12!155;UBERON:0001555!1.38e-12!155;UBERON:0007026!1.38e-12!155;UBERON:0000467!1.45e-12!625;UBERON:0000480!1.99e-12!626;UBERON:0000477!6.23e-12!286;UBERON:0000922!9.24e-12!612;UBERON:0004119!1.27e-11!169;UBERON:0000925!1.27e-11!169;UBERON:0006595!1.27e-11!169;UBERON:0005256!1.53e-10!143;UBERON:0002100!4.18e-10!216;UBERON:0002050!1.28e-09!605;UBERON:0005423!1.28e-09!605;UBERON:0000914!1.31e-09!83;UBERON:0002329!1.31e-09!83;UBERON:0003077!1.31e-09!83;UBERON:0003059!1.31e-09!83;UBERON:0007282!1.31e-09!83;UBERON:0009618!1.31e-09!83;UBERON:0007285!1.31e-09!83;UBERON:0000923!1.92e-09!604;UBERON:0005291!1.92e-09!604;UBERON:0006598!1.92e-09!604;UBERON:0002532!1.92e-09!604;UBERON:0000062!7.97e-09!511;UBERON:0000119!1.10e-08!312;UBERON:0000483!1.68e-08!309;UBERON:0001444!2.19e-08!48;UBERON:0000064!2.73e-08!219;UBERON:0002385!3.36e-08!63;UBERON:0001015!3.36e-08!63;UBERON:0000383!3.36e-08!63;UBERON:0001134!4.04e-08!61;UBERON:0002036!4.04e-08!61;UBERON:0003082!4.04e-08!61;UBERON:0000486!4.89e-08!82;UBERON:0000077!8.55e-08!130;UBERON:0004921!1.54e-07!129;UBERON:0004185!1.54e-07!129;UBERON:0000063!2.39e-07!97;UBERON:0001004!3.49e-07!72;UBERON:0000490!5.31e-07!138;UBERON:0004290!7.34e-07!70;UBERON:0001048!7.71e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;8.20e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,4.85e-13,145;UBERON:0001555,4.85e-13,145;UBERON:0007026,4.85e-13,145;UBERON:0004119,9.59e-12,160;UBERON:0000925,9.59e-12,160;UBERON:0006595,9.59e-12,160;UBERON:0003104,2.02e-09,160;UBERON:0009142,2.02e-09,160;UBERON:0000033,9.36e-09,56;UBERON:0001444,9.79e-09,49;UBERON:0002385,3.06e-08,64;UBERON:0001015,3.06e-08,64;UBERON:0000383,3.06e-08,64;UBERON:0005256,3.42e-08,122;UBERON:0001134,3.78e-08,62;UBERON:0002036,3.78e-08,62;UBERON:0003082,3.78e-08,62;UBERON:0000486,5.15e-08,83;UBERON:0001004,1.07e-07,74;UBERON:0000153,1.43e-07,62;UBERON:0007811,1.43e-07,62;UBERON:0004921,2.06e-07,118;UBERON:0011216,4.80e-07,223;UBERON:0007524,4.89e-07,73;UBERON:0002329,5.66e-07,71;UBERON:0003059,5.66e-07,71;UBERON:0007282,5.66e-07,71;UBERON:0004290,5.66e-07,71;UBERON:0009618,5.66e-07,71;UBERON:0006876,6.85e-07,11;UBERON:0003102,7.71e-07,99 | |||
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|phase1_expression=2.36181893051724,2.5692062866918,3.66481450649525,4.00293193412522,1.78784437770915,0.872338524100369,0,0.631719873426831,0.783556884599516,0.491467873003018,3.48900583986214,2.40285509343189,0,12.6241680019248,6.2965501388304,6.72325146451775,3.01347264011988,3.65155045193687,2.43966399395253,4.30923703268758,3.67201244239655,1.56727360739044,9.15955158819382,8.07559107930017,5.90050406095573,0,0,0,0,0,0.309632246632152,0.919421224478927,0.90361775633475,0,1.08454080812422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1903433156981,12.7433163343691,6.52099065402005,2.1686349143074,3.50936537445123,3.18662341713812,0.795285947051099,0,22.1211472163919,18.1818105919302,20.202000709419,2.16115474571226,0,1.11235332835329,0,0,0,0,0,0,0,0,0,1.13061588384802,0.419499436209906,0.825354125820202,1.04497483268405,1.55050055501597,1.77883131343355,1.00416183829401,0,0,0.24406205754817,0.367663080345869,0.81014194788176,2.94689103337463,2.02076435363553,2.92789849256638,1.53316637465883,0,0.366403487860815,0,0,1.74437620857014,1.98788780678127,3.03913227994991,6.22323149822128,6.02356903572509,2.4826786753885,5.04609840128076,2.1349799145941,1.48000529050296,14.9381296991888,2.02066008104532,4.25000948094993,12.4113090668844,4.60940739583999,2.81185718200556,2.49728061464256,1.1409436430889,0.149448680551801,1.87895197830024,2.42809416552197,1.54495887372473,6.73708765141148,6.63305313483547,3.40975077880026,13.0680314301026,6.42894016124248,0,0.718618141816238,4.88174730466792,4.50426671539071,8.86605169549385,8.34057479673592,9.50112166976961,5.85928429735728,4.3104229600808,1.4351170855109,7.04739383101272,3.17897851739343,3.30100205692843,4.43125875725287,3.09168648054755,4.09457083929498,2.19409231913646,2.04617710838517,5.55354303337052,10.4936884452221,8.72888706821584,6.03516307278244,2.41805035746337,2.7129694769678,1.54608682530637,2.45471508531751,2.29443676311203,15.7346080907178,15.3734531252923,12.3165579441689,12.4393266018445,14.3822884999108,12.4092302085782,0,1.28648187638577,0,8.35862270457562,6.49691533502627,6.86179440231095,5.56329477257736,6.02527574708705,4.52205288202815,3.92182999366331,5.45722423955522,5.39325232640658,6.86775127938711,4.23221872641029,0.738155454624648,1.40241773803446,3.7041661019826,4.41026134156626,1.26755034821831,0,2.95394953340702,0,0.614942192715568,4.46076306776166,2.52425656439839,0,0.703702806881416,2.03694579348765,2.28065813717227,0,2.88662684050547,13.4479269771089,13.9716346140628,2.30986316417718,1.38895653772983,3.04406643575357,0,0,0,0,0,1.87467667973554,2.01578553838631,1.41775097242386,0.716468181622786,2.03443756959773,1.91691339582606,0,0,0,0,0.12624243342638,2.09543051164158,2.67391897890794,7.03304683260282,1.71072446022705,2.77634230298973,3.30377363628309,10.5755780073314,3.25180144601546,1.30788020649984,2.0534720029866,6.72212921940444,0,0.845302752556,2.6593811658487,2.08014873822732,4.62973273671856,4.25547396069835,2.39779961114489,2.28764789853036,3.25572963234866,2.46972101034231,0.325736184293735,2.84313558994037,1.58390374586686,1.50719688529793,1.74306691720059,0.299918973546171,0,0,0,0.718874566474748,3.44585807502342,0,1.88215698667853,6.98619496671304,0.895304816199478,0,0,0,0,4.31960861178188,2.60279707715243,3.09315525111078,2.01019518401218,3.18969375826582,0,0,0,16.3179683986456,9.50323990013386,3.7977103317963,7.07100929204744,15.7017510141502,20.0282067093097,16.9855051739434,5.11608369537122,0,2.0694614258501,8.63493278096067,6.26855173041791,12.5112404834039,1.37060810223918,0.343143423810856,0,0,0,1.21251028578504,0,0.604780586659361,2.23297027036899,3.22270143904931,1.12264037773229,0.896974044789907,5.11707249066703,1.12597744800525,1.48418066444991,0.462629081407967,0.355123450626254,1.97105174433142,0,0.929683027679674,1.57117284469109,2.6065841139427,0,5.97035130455955,6.91946438425525,10.7522020266728,1.80479845162965,0.770153371044148,0.784349769176855,1.46139224653261,2.53323909342902,0,0.340187410553031,1.72732732881711,0,2.43851793789468,1.00337954770971,0.764628819135115,0,1.34324852833307,0,0,3.07740150139667,4.92021968549559,1.30151357865721,1.75169719801128,4.39533431128048,4.37300349579116,0.574265537996172,0,4.82051789532479,1.45006077438183,3.08097234229289,3.07007349452259,2.06754858726796,7.84167787538397,3.62541734785571,2.89770533214743,2.22580089116843,0.661139661443912,0.576570202095319,1.78657797492418,0.10115778085555,1.39453664789186,3.1481234683064,2.0911118104818,5.5446044431696,2.12922412126809,2.60979897622522,2.96518750566272,2.28999818787186,5.21021717103534,7.90948561796815,5.3376454298671,2.81487570442467,8.98671874871233,2.54562598340749,0.78494864019923,5.57604618508276,7.41249980287348,4.24124648444471,2.02182481573316,1.58510321173008,0.842516912477962,5.85160486907508,5.11798328225697,5.2825073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| ||
|short_description=p2@MID1 | |||
}} | }} |
Latest revision as of 22:05, 18 September 2015
Short description: | p2@MID1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MID1_5end |
Coexpression cluster: | NA |
Association with transcript: | -57bp_to_ENST00000380782_5end |
EntrezGene: | MID1 |
HGNC: | 7095 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.07e-12 | 250 |
electrically responsive cell | 4.13e-10 | 61 |
electrically active cell | 4.13e-10 | 61 |
muscle cell | 1.59e-08 | 55 |
muscle precursor cell | 1.89e-08 | 58 |
myoblast | 1.89e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.89e-08 | 58 |
fibroblast | 2.46e-08 | 76 |
neurectodermal cell | 4.99e-07 | 59 |
epithelial cell | 5.95e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
digestive system | 4.85e-13 | 145 |
digestive tract | 4.85e-13 | 145 |
primitive gut | 4.85e-13 | 145 |
endoderm-derived structure | 9.59e-12 | 160 |
endoderm | 9.59e-12 | 160 |
presumptive endoderm | 9.59e-12 | 160 |
mesenchyme | 2.02e-09 | 160 |
entire embryonic mesenchyme | 2.02e-09 | 160 |
head | 9.36e-09 | 56 |
subdivision of head | 9.79e-09 | 49 |
muscle tissue | 3.06e-08 | 64 |
musculature | 3.06e-08 | 64 |
musculature of body | 3.06e-08 | 64 |
trunk mesenchyme | 3.42e-08 | 122 |
skeletal muscle tissue | 3.78e-08 | 62 |
striated muscle tissue | 3.78e-08 | 62 |
myotome | 3.78e-08 | 62 |
multilaminar epithelium | 5.15e-08 | 83 |
respiratory system | 1.07e-07 | 74 |
anterior region of body | 1.43e-07 | 62 |
craniocervical region | 1.43e-07 | 62 |
subdivision of digestive tract | 2.06e-07 | 118 |
organ system subdivision | 4.80e-07 | 223 |
dense mesenchyme tissue | 4.89e-07 | 73 |
somite | 5.66e-07 | 71 |
presomitic mesoderm | 5.66e-07 | 71 |
presumptive segmental plate | 5.66e-07 | 71 |
dermomyotome | 5.66e-07 | 71 |
trunk paraxial mesoderm | 5.66e-07 | 71 |
vasculature of organ | 6.85e-07 | 11 |
surface structure | 7.71e-07 | 99 |