FFCP PHASE1:Hg19::chr3:52029900..52029941,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6159 | |EntrezGene=6159 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10331 | |HGNC=10331 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000486565_5end | |association_with_transcript=0bp_to_ENST00000486565_5end | ||
|cluster_id=chr3:52029900..52029941,- | |||
|description=CAGE_peak_1_at_RPL29_5end | |description=CAGE_peak_1_at_RPL29_5end | ||
|id=chr3:52029900..52029941,- | |id=chr3:52029900..52029941,- | ||
|ontology_enrichment_celltype=CL:0000144!2.20e-25!625;CL:0000012!1.19e-23!682;CL:0002371!4.59e-23!591;CL:0000548!3.50e-22!679;CL:0000004!3.50e-22!679;CL:0000255!3.50e-22!679;CL:0000003!4.47e-21!722;CL:0000183!1.12e-11!59;CL:0000222!5.39e-10!119;CL:0002321!9.27e-10!248;CL:0000220!1.12e-09!246;CL:0000187!1.68e-09!54;CL:0000680!3.74e-09!57;CL:0000056!3.74e-09!57;CL:0000355!3.74e-09!57;CL:0000393!1.03e-08!60;CL:0000211!1.03e-08!60;CL:0000192!7.84e-08!42;CL:0000514!7.84e-08!42;CL:0000063!2.24e-07!578 | |ontology_enrichment_celltype=CL:0000144!2.20e-25!625;CL:0000012!1.19e-23!682;CL:0002371!4.59e-23!591;CL:0000548!3.50e-22!679;CL:0000004!3.50e-22!679;CL:0000255!3.50e-22!679;CL:0000003!4.47e-21!722;CL:0000183!1.12e-11!59;CL:0000222!5.39e-10!119;CL:0002321!9.27e-10!248;CL:0000220!1.12e-09!246;CL:0000187!1.68e-09!54;CL:0000680!3.74e-09!57;CL:0000056!3.74e-09!57;CL:0000355!3.74e-09!57;CL:0000393!1.03e-08!60;CL:0000211!1.03e-08!60;CL:0000192!7.84e-08!42;CL:0000514!7.84e-08!42;CL:0000063!2.24e-07!578 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.02e-10,121;CL:0002321,3.97e-10,250;CL:0000187,1.23e-09,55;CL:0000680,2.73e-09,58;CL:0000056,2.73e-09,58;CL:0000355,2.73e-09,58;CL:0000393,7.55e-09,61;CL:0000211,7.55e-09,61;CL:0000192,5.77e-08,43;CL:0000514,5.77e-08,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!3.31e-10!82;UBERON:0004290!6.61e-10!70;UBERON:0001134!5.35e-09!61;UBERON:0002036!5.35e-09!61;UBERON:0003082!5.35e-09!61;UBERON:0000914!2.30e-08!83;UBERON:0002329!2.30e-08!83;UBERON:0003077!2.30e-08!83;UBERON:0003059!2.30e-08!83;UBERON:0007282!2.30e-08!83;UBERON:0009618!2.30e-08!83;UBERON:0007285!2.30e-08!83;UBERON:0002385!3.73e-08!63;UBERON:0001015!3.73e-08!63;UBERON:0000383!3.73e-08!63;UBERON:0002049!1.32e-07!79;UBERON:0007798!1.32e-07!79;UBERON:0004535!6.82e-07!110 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.41e-12,78;UBERON:0000486,2.40e-10,83;UBERON:0002329,4.80e-10,71;UBERON:0003059,4.80e-10,71;UBERON:0007282,4.80e-10,71;UBERON:0004290,4.80e-10,71;UBERON:0009618,4.80e-10,71;UBERON:0007524,1.68e-09,73;UBERON:0003077,2.01e-09,72;UBERON:0007285,2.01e-09,72;UBERON:0001134,3.90e-09,62;UBERON:0002036,3.90e-09,62;UBERON:0003082,3.90e-09,62;UBERON:0002385,2.73e-08,64;UBERON:0001015,2.73e-08,64;UBERON:0000383,2.73e-08,64;UBERON:0002049,8.24e-08,78;UBERON:0007798,8.24e-08,78;UBERON:0000490,1.06e-07,148;UBERON:0004535,4.81e-07,109 | |||
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| ||
|short_description=p1@RPL29 | |short_description=p1@RPL29 | ||
}} | }} |
Latest revision as of 22:25, 18 September 2015
Short description: | p1@RPL29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPL29_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000486565_5end |
EntrezGene: | RPL29 |
HGNC: | 10331 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.02e-10 | 121 |
embryonic cell | 3.97e-10 | 250 |
muscle cell | 1.23e-09 | 55 |
muscle precursor cell | 2.73e-09 | 58 |
myoblast | 2.73e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.73e-09 | 58 |
electrically responsive cell | 7.55e-09 | 61 |
electrically active cell | 7.55e-09 | 61 |
smooth muscle cell | 5.77e-08 | 43 |
smooth muscle myoblast | 5.77e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.41e-12 | 78 |
multilaminar epithelium | 2.40e-10 | 83 |
somite | 4.80e-10 | 71 |
presomitic mesoderm | 4.80e-10 | 71 |
presumptive segmental plate | 4.80e-10 | 71 |
dermomyotome | 4.80e-10 | 71 |
trunk paraxial mesoderm | 4.80e-10 | 71 |
dense mesenchyme tissue | 1.68e-09 | 73 |
paraxial mesoderm | 2.01e-09 | 72 |
presumptive paraxial mesoderm | 2.01e-09 | 72 |
skeletal muscle tissue | 3.90e-09 | 62 |
striated muscle tissue | 3.90e-09 | 62 |
myotome | 3.90e-09 | 62 |
muscle tissue | 2.73e-08 | 64 |
musculature | 2.73e-08 | 64 |
musculature of body | 2.73e-08 | 64 |
vasculature | 8.24e-08 | 78 |
vascular system | 8.24e-08 | 78 |
unilaminar epithelium | 1.06e-07 | 148 |
cardiovascular system | 4.81e-07 | 109 |