FFCP PHASE1:Hg19::chrX:107683096..107683121,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:107683096..107683121,+ to FFCP PHASE1:Hg19::chrX:107683096..107683121,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1287 | |EntrezGene=1287 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2207 | |HGNC=2207 | ||
|TSSclassifier=strong | |||
|UniProt=P29400 | |UniProt=P29400 | ||
|association_with_transcript=0bp_to_ENST00000328300,ENST00000361603_5end | |||
|cluster_id=chrX:107683096..107683121,+ | |||
|coexpression_cluster_id=C4843 | |||
|description=CAGE_peak_3_at_COL4A5_5end | |||
|id=chrX:107683096..107683121,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.71e-17!254;CL:0002321!5.31e-11!248;CL:0000220!1.00e-10!246;CL:0002076!4.72e-08!43 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.64e-09;42!CL:0002251;2.23e-09;20!CL:0000154;3.05e-08;6!CL:0000622;1.16e-07;5!CL:0000150;5.21e-07;9!CL:0002368;5.70e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.00e-12,253;CL:0002076,2.72e-11,42;CL:0002251,2.11e-09,20;CL:0000154,1.82e-08,6;CL:0000223,2.45e-08,58;CL:0002321,5.81e-08,250;CL:0000622,8.55e-08,5;CL:0000150,4.99e-07,9;CL:0002368,5.74e-07,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!6.18e-18!347;UBERON:0004119!2.78e-17!169;UBERON:0000925!2.78e-17!169;UBERON:0006595!2.78e-17!169;UBERON:0000922!2.11e-16!612;UBERON:0000468!1.11e-14!659;UBERON:0002050!4.27e-14!605;UBERON:0005423!4.27e-14!605;UBERON:0000923!1.26e-13!604;UBERON:0005291!1.26e-13!604;UBERON:0006598!1.26e-13!604;UBERON:0002532!1.26e-13!604;UBERON:0001007!3.08e-13!155;UBERON:0001555!3.08e-13!155;UBERON:0007026!3.08e-13!155;UBERON:0000483!3.59e-13!309;UBERON:0003104!5.12e-13!238;UBERON:0009142!5.12e-13!238;UBERON:0000119!8.52e-13!312;UBERON:0000477!1.80e-12!286;UBERON:0000467!1.07e-11!625;UBERON:0000480!1.56e-11!626;UBERON:0004921!9.09e-11!129;UBERON:0004185!9.09e-11!129;UBERON:0000475!3.35e-10!365;UBERON:0004111!1.06e-09!241;UBERON:0000062!1.36e-09!511;UBERON:0000077!2.69e-09!130;UBERON:0005911!2.77e-09!82;UBERON:0001004!3.09e-09!72;UBERON:0001048!3.65e-09!168;UBERON:0000064!5.29e-09!219;UBERON:0002100!5.71e-08!216;UBERON:0005256!7.44e-08!143;UBERON:0002530!2.18e-07!59;UBERON:0005156!2.51e-07!59;UBERON:0000990!2.51e-07!59;UBERON:0000161!3.01e-07!35;UBERON:0000490!3.09e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;8.79e-08;12!UBERON:0000365;1.38e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.37e-13,160;UBERON:0000925,2.37e-13,160;UBERON:0006595,2.37e-13,160;UBERON:0000922,1.03e-10,592;UBERON:0002050,2.63e-10,564;UBERON:0005423,2.29e-09,581;UBERON:0000923,3.81e-09,560;UBERON:0010316,3.81e-09,560;UBERON:0005291,3.81e-09,560;UBERON:0006598,3.81e-09,560;UBERON:0010317,3.81e-09,560;UBERON:0002532,3.81e-09,560;UBERON:0001007,6.26e-09,145;UBERON:0001555,6.26e-09,145;UBERON:0007026,6.26e-09,145;UBERON:0000365,1.42e-07,5;UBERON:0004921,2.36e-07,118;UBERON:0002530,4.47e-07,59;UBERON:0002365,9.98e-07,31;UBERON:0002330,9.98e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,2.45733936501509,2.09340350391728,10.9220686065086,14.7709507807934,0.123766352960047,0,0,0,0.730310090387373,0,0.123121058076788,0.204000691244253,1.56727360739044,5.15224776835902,1.77936752594749,2.51085279189606,0,0,0,0,0,0.309632246632152,2.75826367343678,3.0120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0.472674085820339,0.665188192387692,0.351339142772504,1.57174890597255,2.18577172975525,0.370784442784429,0,0,0,0,0,0,0,0.860234595106124,0,1.13061588384802,0.838998872419812,0.275118041940067,0,0,0.35576626268671,0,0,0,0,1.10298924103761,0.81014194788176,0.267899184852239,0,0,0,0,0.366403487860815,0,0,2.61656431285521,0,0.759783069987479,3.17782033951725,1.43418310374407,0,3.36406560085384,0,0.74000264525148,1.8672662123986,1.21239604862719,0.817309515567294,1.36221684880438,2.88087962239999,0,0,0.570471821544449,0,0.352303495931295,0.161872944368132,0,0.204154171254893,0,0.206651562351531,0,0,0,0,0.168336113954066,0.125118519871964,0.831192346452549,0,0,0,0.567160915800105,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0.161646056818812,0,0,0,2.31913023795956,3.81844568827169,1.14721838155602,0.731842236777572,0.265059536642971,1.16193942869518,2.69518743039963,1.7662459561294,0.36497735907583,0,0.643240938192885,0,0,0,1.0647612003586,0.674338760312407,0.723033089650446,1.21323370005633,1.52515610864684,0.237270619111097,1.07865046528132,1.56977172100277,0.769494313892781,0,0,2.4694440679884,1.47008711385542,0,0,0,0,0.491953754172454,0.514703430895577,2.96325770603289,1.1240175325762,1.3068766413512,1.38882667737794,0.325808305310325,0,0,1.39116485970092,1.52631302506568,0,0,0.190254152234598,0,0.858486162094873,0,0,0,2.81201501960331,2.35174979478403,0.850650583454319,5.1943943167652,3.19697332365358,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,8.29272363217256,4.88359444852299,0.823240336780769,0,10.6617584622764,1.58390374586686,10.2489388200259,15.6876022548053,12.5965968889392,0,0,0,0.718874566474748,0,0,0,0.205476322550383,0,0,0,0,0,1.52456774533478,0,0,0.335032530668698,0.637938751653163,0,0,0,0.49076596687656,0,0,0.831883446123229,1.42743191037729,3.15404830067869,1.40569697991256,0,0,0,0,0,0.0868836144680828,0.391602314925481,0.343143423810856,0,0,0,2.42502057157008,0,4.83824469327489,0,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0.519254429183621,0.116210378459959,0.241718899183244,2.80709058424599,0.736647911487171,0.803701137152247,0,0.131124414959424,0.451199612907412,0.15403067420883,0,0,0.105551628892876,0,0,0.647747748306418,0,1.08378575017541,0,0.254876273045038,0,0.223874754722178,0,0,0,0.328014645699706,0,0.103041011647722,0,0,2.87132768998086,3.90036147621913,1.6068392984416,0.096670718292122,0.154048617114644,0,0,0.107420244868274,0,0,0.0890320356467374,5.61968712227326,6.1500821556834,24.3740280864656,2.73126008309985,0,1.88887408098384,2.0911118104818,0.308033580176089,1.06461206063404,0,2.59453906745488,1.86062352764589,0,0.949138274156178,1.33441135746677,0,0.855877976067841,0.636406495851874,0,0.539617372749944,0.823611089208164,2.00281083987667,1.61745985258653,0,0.421258456238981,0.48763373908959,2.92456187557541,5.28250733783777,0.545999645631943,3.67654123079653,0,0.551365343546124,1.32687795048244,2.63070531152258,0.578775534266688,0,2.23201414658974,0,1.12678241012897,0.573645408816206,0.392996164052485,2.1400263088875,0,0,0,0.75894634753143,1.04980416073495,3.07910760721639,2.68120910214315,0,0.188287601553558,7.31859133541091,6.73885902670502,5.76459199597678,5.05391480455311,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.293016358543788,0,0,0,15.7571359926875,3.26661148915902,7.37185685038157,0,0.140669416410513,0.667852230137435,0,0.422250816255987,0.996239941255349,0.276283915531148,0,2.24991101504741,0,0,0.988551862620595,0.716084698702437,0,3.45251919729268,0,3.33410970433911,0.969332746095218,0.0927680981618513,0,1.04171104434093,0.524759999977174,0.724999575434793,0.455173793141999,0,0.472775363535873,0,0,0,1.77148277162768,0,0,0,0,0.219385397153973,0.653630781113941,2.50962739701486,4.38616473471643,1.13942055847001,0.23056390438806,0,0,1.91400695839152,1.92354946143911,0.533034776018635,0,0.31396051279005,0,0,0,0,0,0,0,0,1.41353071433941,0,0,0,3.66618086960175,0,0,0,0.134802265961354,0.802577647298789,0,0,0,0,3.55125962564451,3.62972148145992,1.22429104652196,0,0.751617097072463,0.311064574191741,0,0.330991955875499,0,0,0,0.693373365065693,0,0.195984794828755,0.783532859223623,3.14508002835654,0,3.38647159511798,3.50828722013691,4.27000376676688,2.71569246167574,0,2.03382666702479,0,0,0,3.71547627196126,0.240476460754601,6.83049583165928,0,0,0.458146384663663,0,0,0.124252535565433,1.17847017308398,0,0,0,0,0,0.13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| 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| ||
|short_description=p3@COL4A5 | |||
}} | }} |
Latest revision as of 23:37, 18 September 2015
Short description: | p3@COL4A5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL4A5_5end |
Coexpression cluster: | C4843_Small_amniotic_uterus_Amniotic_smooth_Mesenchymal_salivary |
Association with transcript: | 0bp_to_ENST00000328300, ENST00000361603_5end |
EntrezGene: | COL4A5 |
HGNC: | 2207 |
UniProt: | P29400 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.00e-12 | 253 |
endo-epithelial cell | 2.72e-11 | 42 |
epithelial cell of alimentary canal | 2.11e-09 | 20 |
protein secreting cell | 1.82e-08 | 6 |
endodermal cell | 2.45e-08 | 58 |
embryonic cell | 5.81e-08 | 250 |
acinar cell | 8.55e-08 | 5 |
glandular epithelial cell | 4.99e-07 | 9 |
respiratory epithelial cell | 5.74e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.37e-13 | 160 |
endoderm | 2.37e-13 | 160 |
presumptive endoderm | 2.37e-13 | 160 |
embryo | 1.03e-10 | 592 |
embryonic structure | 2.63e-10 | 564 |
developing anatomical structure | 2.29e-09 | 581 |
germ layer | 3.81e-09 | 560 |
germ layer / neural crest | 3.81e-09 | 560 |
embryonic tissue | 3.81e-09 | 560 |
presumptive structure | 3.81e-09 | 560 |
germ layer / neural crest derived structure | 3.81e-09 | 560 |
epiblast (generic) | 3.81e-09 | 560 |
digestive system | 6.26e-09 | 145 |
digestive tract | 6.26e-09 | 145 |
primitive gut | 6.26e-09 | 145 |
urothelium | 1.42e-07 | 5 |
subdivision of digestive tract | 2.36e-07 | 118 |
gland | 4.47e-07 | 59 |
exocrine gland | 9.98e-07 | 31 |
exocrine system | 9.98e-07 | 31 |