FFCP PHASE1:Hg19::chr18:32398296..32398318,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1837 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=3057 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q59GK7,Q9Y4J8 | ||
|association_with_transcript=0bp_to_NM_032980,NM_032981,uc002kyd.3,uc002kye.2,uc010dmo.2,uc010xbz.1,uc010xca.1_5end | |association_with_transcript=0bp_to_NM_032980,NM_032981,uc002kyd.3,uc002kye.2,uc010dmo.2,uc010xbz.1,uc010xca.1_5end | ||
|cluster_id=chr18:32398296..32398318,+ | |cluster_id=chr18:32398296..32398318,+ | ||
Latest revision as of 07:35, 19 September 2015
| Short description: | p7@DTNA |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_7_at_DTNA_5end |
| Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
| Association with transcript: | 0bp_to_NM_032980, NM_032981, uc002kyd.3, uc002kye.2, uc010dmo.2, uc010xbz.1, uc010xca.1_5end |
| EntrezGene: | DTNA |
| HGNC: | 3057 |
| UniProt: | Q59GK7Q9Y4J8 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p7@DTNA |
|---|
0
20
40
60
80
100
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neural tube | 7.98e-141 | 56 |
| neural rod | 7.98e-141 | 56 |
| future spinal cord | 7.98e-141 | 56 |
| neural keel | 7.98e-141 | 56 |
| regional part of nervous system | 3.15e-129 | 53 |
| regional part of brain | 3.15e-129 | 53 |
| central nervous system | 2.45e-111 | 81 |
| brain | 2.60e-107 | 68 |
| future brain | 2.60e-107 | 68 |
| nervous system | 8.05e-104 | 89 |
Showing 1 to 10 of 99 entries
