FFCP PHASE1:Hg19::chrX:123480214..123480227,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=4068 | |EntrezGene=4068 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=10820 | |HGNC=10820 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc010nqx.2_5end | |association_with_transcript=0bp_to_uc010nqx.2_5end | ||
|cluster_id=chrX:123480214..123480227,+ | |||
|coexpression_cluster_id=C386 | |coexpression_cluster_id=C386 | ||
|description=CAGE_peak_6_at_SH2D1A_5end | |description=CAGE_peak_6_at_SH2D1A_5end | ||
Latest revision as of 08:02, 19 September 2015
| Short description: | p6@SH2D1A |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_SH2D1A_5end |
| Coexpression cluster: | C386_chronic_acute_Hodgkin_NK_thymus_liver_blood |
| Association with transcript: | 0bp_to_uc010nqx.2_5end |
| EntrezGene: | SH2D1A |
| HGNC: | 10820 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@SH2D1A |
|---|
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5
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| innate effector T cell | 2.11e-14 | 1 |
| immature NK T cell | 2.11e-14 | 1 |
| effector T cell | 2.11e-14 | 1 |
| mature NK T cell | 2.11e-14 | 1 |
| immature NK T cell stage IV | 2.11e-14 | 1 |
| immature NK T cell stage I | 2.11e-14 | 1 |
| immature NK T cell stage II | 2.11e-14 | 1 |
| immature NK T cell stage III | 2.11e-14 | 1 |
| T cell | 1.96e-13 | 25 |
| pro-T cell | 1.96e-13 | 25 |
Showing 1 to 10 of 23 entries
| Ontology term | p-value | n |
|---|---|---|
| thymus | 8.59e-30 | 4 |
| hemolymphoid system gland | 8.59e-30 | 4 |
| thymic region | 8.59e-30 | 4 |
| pharyngeal gland | 8.59e-30 | 4 |
| thymus primordium | 8.59e-30 | 4 |
| pharyngeal epithelium | 4.11e-20 | 6 |
| hemopoietic organ | 2.44e-17 | 7 |
| immune organ | 2.44e-17 | 7 |
| umbilical cord | 1.75e-12 | 10 |
| blastocyst | 1.75e-12 | 10 |
Showing 1 to 10 of 29 entries
| Ontology term | p-value | n |
|---|---|---|
| hematologic cancer | 3.11e-20 | 51 |
| immune system cancer | 3.11e-20 | 51 |
| non-Hodgkin lymphoma | 1.07e-14 | 1 |
| cutaneous T cell lymphoma | 1.07e-14 | 1 |
| mycosis fungoides | 1.07e-14 | 1 |
| bone marrow cancer | 1.41e-14 | 1 |
| myeloma | 1.41e-14 | 1 |
| leukemia | 4.01e-12 | 39 |
| organ system cancer | 7.37e-07 | 137 |
Showing 1 to 9 of 9 entries
