FFCP PHASE2:Hg19::chr14:23526715..23526738,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:64403 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:14265 |TSScla...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=64403 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=14265 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q86UP0,E7EMU3 | ||
|association_with_transcript=8bp_to_ENST00000397359,ENST00000422751,ENST00000487137,NM_022478,NM_144985,uc001wil.2,uc001win.3,uc010akf.2_5end | |association_with_transcript=8bp_to_ENST00000397359,ENST00000422751,ENST00000487137,NM_022478,NM_144985,uc001wil.2,uc001win.3,uc010akf.2_5end | ||
|cluster_id=chr14:23526715..23526738,- | |cluster_id=chr14:23526715..23526738,- | ||
Latest revision as of 08:42, 19 September 2015
| Short description: | p1@CDH24 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_CDH24_5end |
| Coexpression cluster: | C114_teratocarcinoma_medulloblastoma_carcinosarcoma_iPS_anaplastic_acute_neuroblastoma |
| Association with transcript: | 8bp_to_ENST00000397359, ENST00000422751, ENST00000487137, NM_022478, NM_144985, uc001wil.2, uc001win.3, uc010akf.2_5end |
| EntrezGene: | CDH24 |
| HGNC: | 14265 |
| UniProt: | Q86UP0E7EMU3 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@CDH24 |
|---|
0
50
100
150
200
250
300
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 5.89e-20 | 253 |
| embryonic cell | 7.62e-16 | 250 |
| squamous epithelial cell | 5.10e-10 | 63 |
| neural cell | 1.59e-08 | 25 |
| neurectodermal cell | 7.93e-07 | 59 |
| ectodermal cell | 8.72e-07 | 72 |
Showing 1 to 6 of 6 entries
| Ontology term | p-value | n |
|---|---|---|
| cell layer | 8.32e-13 | 309 |
| epithelium | 4.00e-12 | 306 |
| organ system subdivision | 7.37e-12 | 223 |
| nervous system | 2.22e-08 | 89 |
| central nervous system | 7.15e-08 | 81 |
| ectoderm-derived structure | 7.95e-08 | 171 |
| ectoderm | 7.95e-08 | 171 |
| presumptive ectoderm | 7.95e-08 | 171 |
| anatomical conduit | 1.18e-07 | 240 |
| tube | 1.83e-07 | 192 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| cell type cancer | 8.50e-15 | 143 |
| cancer | 3.00e-11 | 235 |
| disease of cellular proliferation | 4.30e-11 | 239 |
| carcinoma | 5.23e-11 | 106 |
Showing 1 to 4 of 4 entries
