FFCP PHASE1:Hg19::chr5:98105219..98105258,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:98105219..98105258,+
|short_description=p6@RGMB
|description=CAGE_peak_6_at_RGMB_5end
|association_with_transcript=79bp_to_ENST00000507054_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=285704 | |EntrezGene=285704 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26896 | |HGNC=26896 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=79bp_to_ENST00000507054_5end | |||
|cluster_id=chr5:98105219..98105258,+ | |||
|coexpression_cluster_id=C952 | |||
|description=CAGE_peak_6_at_RGMB_5end | |||
|id=chr5:98105219..98105258,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.37e-30!180;CL:0000057!6.04e-19!75;CL:0000680!5.33e-14!57;CL:0000056!5.33e-14!57;CL:0000355!5.33e-14!57;CL:0002620!4.19e-13!23;CL:0002321!7.79e-13!248;CL:0000187!1.14e-12!54;CL:0000220!1.41e-12!246;CL:0000222!1.42e-12!119;CL:0000183!1.61e-12!59;CL:0000393!2.86e-12!60;CL:0000211!2.86e-12!60;CL:0000359!3.29e-11!32;CL:0000192!3.96e-11!42;CL:0000514!3.96e-11!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.23e-16;23!CL:0000359;1.11e-11;32!CL:0000192;3.99e-09;43!CL:0000057;1.59e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.72e-20,76;CL:0002620,7.23e-17,23;CL:0000680,2.39e-12,58;CL:0000056,2.39e-12,58;CL:0000355,2.39e-12,58;CL:0000359,3.35e-12,32;CL:0000187,8.23e-11,55;CL:0000192,1.08e-10,43;CL:0000514,1.08e-10,43;CL:0000393,8.91e-10,61;CL:0000211,8.91e-10,61;CL:0000222,4.35e-09,121 | |||
|ontology_enrichment_development_v019=CL:0000514;3.99e-09;43!CL:0000355;8.96e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.19e-19!83;UBERON:0002329!6.19e-19!83;UBERON:0003077!6.19e-19!83;UBERON:0003059!6.19e-19!83;UBERON:0007282!6.19e-19!83;UBERON:0009618!6.19e-19!83;UBERON:0007285!6.19e-19!83;UBERON:0000475!9.81e-19!365;UBERON:0004290!2.77e-16!70;UBERON:0002199!2.07e-15!45;UBERON:0002416!2.07e-15!45;UBERON:0000486!7.86e-15!82;UBERON:0001637!1.55e-14!42;UBERON:0003509!1.55e-14!42;UBERON:0004572!1.55e-14!42;UBERON:0002097!1.10e-13!40;UBERON:0003102!1.77e-13!95;UBERON:0002385!1.29e-12!63;UBERON:0001015!1.29e-12!63;UBERON:0000383!1.29e-12!63;UBERON:0001134!1.74e-12!61;UBERON:0002036!1.74e-12!61;UBERON:0003082!1.74e-12!61;UBERON:0004573!2.00e-12!33;UBERON:0004571!2.00e-12!33;UBERON:0000055!3.62e-12!69;UBERON:0000119!6.13e-12!312;UBERON:0001981!6.33e-12!60;UBERON:0007500!6.33e-12!60;UBERON:0004537!6.33e-12!60;UBERON:0006965!6.33e-12!60;UBERON:0002049!7.08e-12!79;UBERON:0007798!7.08e-12!79;UBERON:0000483!1.10e-11!309;UBERON:0000468!2.01e-11!659;UBERON:0000481!2.17e-11!347;UBERON:0004872!1.96e-10!84;UBERON:0000467!4.54e-10!625;UBERON:0000480!7.09e-10!626;UBERON:0005256!1.08e-09!143;UBERON:0002100!2.03e-07!216;UBERON:0000947!2.55e-07!21;UBERON:0010191!2.55e-07!21;UBERON:0004535!3.22e-07!110;UBERON:0004111!3.58e-07!241;UBERON:0000490!8.58e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.26e-13;33!UBERON:0004571;3.26e-13;33!UBERON:0001637;5.56e-12;42!UBERON:0003509;5.56e-12;42!UBERON:0004572;5.56e-12;42!UBERON:0002199;6.69e-12;46!UBERON:0002416;6.69e-12;46!UBERON:0002097;7.09e-12;41!UBERON:0003102;5.39e-10;50!UBERON:0000947;3.24e-09;21!UBERON:0010191;3.24e-09;21!UBERON:0007500;8.43e-08;56!UBERON:0001981;8.43e-08;56!UBERON:0004537;8.43e-08;56!UBERON:0002067;9.85e-07;9 | |||
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| ||
|short_description=p6@RGMB | |||
}} | }} |
Latest revision as of 10:26, 19 September 2015
Short description: | p6@RGMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RGMB_5end |
Coexpression cluster: | C952_basal_Fibroblast_tenocyte_Hair_Smooth_Preadipocyte_Myoblast |
Association with transcript: | 79bp_to_ENST00000507054_5end |
EntrezGene: | RGMB |
HGNC: | 26896 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.72e-20 | 76 |
skin fibroblast | 7.23e-17 | 23 |
muscle precursor cell | 2.39e-12 | 58 |
myoblast | 2.39e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.39e-12 | 58 |
vascular associated smooth muscle cell | 3.35e-12 | 32 |
muscle cell | 8.23e-11 | 55 |
smooth muscle cell | 1.08e-10 | 43 |
smooth muscle myoblast | 1.08e-10 | 43 |
electrically responsive cell | 8.91e-10 | 61 |
electrically active cell | 8.91e-10 | 61 |
mesodermal cell | 4.35e-09 | 121 |