FFCP PHASE1:Hg19::chr6:10419824..10419840,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:10419824..10419840,- to FFCP PHASE1:Hg19::chr6:10419824..10419840,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7020 | |EntrezGene=7020 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11742 | |HGNC=11742 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=15bp_to_ENST00000486038_5end | |||
|cluster_id=chr6:10419824..10419840,- | |||
|coexpression_cluster_id=C4538 | |||
|description=CAGE_peak_9_at_TFAP2A_5end | |||
|id=chr6:10419824..10419840,- | |||
|ontology_enrichment_celltype=CL:0000066!4.74e-35!254;CL:0002076!6.11e-16!43;CL:0002159!2.23e-13!13;CL:0000223!2.12e-11!59;CL:0000240!1.12e-08!6;CL:0000311!1.12e-08!6;CL:0000079!1.12e-08!6;CL:0000237!1.12e-08!6;CL:0000036!1.12e-08!6;CL:0000357!1.12e-08!6;CL:0000114!1.12e-08!6;CL:0002368!1.19e-08!13;CL:0000362!1.90e-08!8;CL:0000076!9.91e-08!62;CL:0000312!1.32e-07!5;CL:0002251!2.95e-07!21;CL:0002077!7.11e-07!33;CL:0000622!8.81e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002159;5.78e-16;14!CL:0000240;3.93e-11;6!CL:0000311;3.93e-11;6!CL:0000079;3.93e-11;6!CL:0000237;3.93e-11;6!CL:0002076;2.00e-10;42!CL:0000312;1.10e-09;5!CL:0000362;1.25e-09;9!CL:0002327;7.11e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.72e-31,253;CL:0002159,3.86e-16,14;CL:0002076,1.76e-14,42;CL:0000240,3.92e-11,6;CL:0000311,3.92e-11,6;CL:0000079,3.92e-11,6;CL:0000237,3.92e-11,6;CL:0000036,3.92e-11,6;CL:0000357,3.92e-11,6;CL:0000114,3.92e-11,6;CL:0000223,4.18e-11,58;CL:0000312,1.07e-09,5;CL:0000362,1.28e-09,9;CL:0000076,9.34e-08,63;CL:0002327,3.60e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000357;3.93e-11;6!CL:0000114;3.93e-11;6!CL:0000223;9.70e-07;58 | |||
|ontology_enrichment_disease=DOID:305!4.30e-27!106;DOID:0050687!1.26e-20!143;DOID:1749!2.58e-13!14;DOID:162!7.28e-09!235;DOID:14566!2.64e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.58e-13;14!DOID:5093;1.14e-07;4!DOID:1612;1.14e-07;4!DOID:305;8.33e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.30e-22,106;DOID:0050687,5.56e-19,143;DOID:1749,4.20e-13,14;DOID:162,1.05e-08,235;DOID:14566,3.07e-08,239;DOID:5093,1.19e-07,4;DOID:1612,1.19e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.66e-25!72;UBERON:0000065!1.08e-17!53;UBERON:0000072!1.96e-15!46;UBERON:0008947!5.45e-15!38;UBERON:0003258!5.45e-15!38;UBERON:0004119!3.26e-14!169;UBERON:0000925!3.26e-14!169;UBERON:0006595!3.26e-14!169;UBERON:0000161!4.86e-12!35;UBERON:0000166!2.11e-11!21;UBERON:0000077!1.42e-10!130;UBERON:0001041!3.09e-10!98;UBERON:0000464!4.03e-10!104;UBERON:0001737!4.46e-10!9;UBERON:0001007!8.57e-10!155;UBERON:0001555!8.57e-10!155;UBERON:0007026!8.57e-10!155;UBERON:0005153!1.52e-09!37;UBERON:0004921!4.19e-09!129;UBERON:0004185!4.19e-09!129;UBERON:0001557!5.58e-09!19;UBERON:0000165!1.20e-08!28;UBERON:0000930!1.20e-08!28;UBERON:0005178!2.25e-08!34;UBERON:0002224!2.25e-08!34;UBERON:0001008!2.77e-08!45;UBERON:0005156!4.63e-08!59;UBERON:0000990!4.63e-08!59;UBERON:0004175!5.48e-08!25;UBERON:0005181!5.53e-08!35;UBERON:0005631!6.13e-08!14;UBERON:0000158!6.13e-08!14;UBERON:0001044!7.02e-08!6;UBERON:0003293!7.02e-08!6;UBERON:0003294!7.02e-08!6;UBERON:0010047!7.02e-08!6;UBERON:0000167!7.02e-08!6;UBERON:0006554!8.56e-08!44;UBERON:0005157!8.71e-08!51;UBERON:0000915!1.70e-07!52;UBERON:0000064!1.74e-07!219;UBERON:0000062!5.58e-07!511;UBERON:0003133!5.61e-07!48;UBERON:0000466!5.67e-07!126;UBERON:0003100!7.09e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.08e-12;9!UBERON:0001557;1.08e-12;9!UBERON:0000161;1.87e-10;19!UBERON:0000166;1.87e-10;19!UBERON:0005631;2.47e-10;10!UBERON:0000158;2.47e-10;10!UBERON:0001004;3.02e-09;65!UBERON:0000072;6.58e-09;37!UBERON:0000065;6.92e-09;44!UBERON:0000165;1.39e-08;28!UBERON:0001044;1.14e-07;6!UBERON:0003293;1.14e-07;6!UBERON:0003294;1.14e-07;6!UBERON:0010047;1.14e-07;6!UBERON:0003408;1.14e-07;6!UBERON:0000167;1.14e-07;6!UBERON:0001911;7.11e-07;4!UBERON:0001003;8.06e-07;15!UBERON:0007376;8.06e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,3.63e-17,74;UBERON:0001737,5.17e-13,9;UBERON:0004119,8.15e-11,160;UBERON:0000925,8.15e-11,160;UBERON:0006595,8.15e-11,160;UBERON:0005631,1.13e-10,14;UBERON:0000158,1.13e-10,14;UBERON:0000065,1.42e-10,54;UBERON:0000166,7.10e-10,22;UBERON:0000072,1.14e-09,47;UBERON:0008947,1.76e-09,38;UBERON:0003258,1.76e-09,38;UBERON:0001557,2.81e-09,19;UBERON:0000161,6.50e-09,36;UBERON:0003102,1.06e-08,99;UBERON:0001041,3.67e-08,87;UBERON:0000165,5.28e-08,29;UBERON:0000930,5.28e-08,29;UBERON:0001044,1.48e-07,6;UBERON:0003293,1.48e-07,6;UBERON:0003294,1.48e-07,6;UBERON:0010047,1.48e-07,6;UBERON:0000167,1.48e-07,6;UBERON:0004175,1.52e-07,25;UBERON:0001007,3.14e-07,145;UBERON:0001555,3.14e-07,145;UBERON:0007026,3.14e-07,145;UBERON:0001911,3.60e-07,4;UBERON:0005333,3.60e-07,4;UBERON:0008425,3.60e-07,4;UBERON:0005311,3.60e-07,4;UBERON:0001003,7.69e-07,15;UBERON:0007376,7.69e-07,15;UBERON:0007383,7.69e-07,15 | |||
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| ||
|short_description=p9@TFAP2A | |||
}} | }} |
Latest revision as of 13:07, 19 September 2015
Short description: | p9@TFAP2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_TFAP2A_5end |
Coexpression cluster: | C4538_breast_placenta_malignant_choriocarcinoma_Sebocyte_glassy_lung |
Association with transcript: | 15bp_to_ENST00000486038_5end |
EntrezGene: | TFAP2A |
HGNC: | 11742 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.72e-31 | 253 |
general ecto-epithelial cell | 3.86e-16 | 14 |
endo-epithelial cell | 1.76e-14 | 42 |
stratified squamous epithelial cell | 3.92e-11 | 6 |
keratin accumulating cell | 3.92e-11 | 6 |
stratified epithelial cell | 3.92e-11 | 6 |
keratinizing barrier epithelial cell | 3.92e-11 | 6 |
epithelial fate stem cell | 3.92e-11 | 6 |
stratified epithelial stem cell | 3.92e-11 | 6 |
surface ectodermal cell | 3.92e-11 | 6 |
endodermal cell | 4.18e-11 | 58 |
keratinocyte | 1.07e-09 | 5 |
epidermal cell | 1.28e-09 | 9 |
squamous epithelial cell | 9.34e-08 | 63 |
mammary gland epithelial cell | 3.60e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 3.63e-17 | 74 |
larynx | 5.17e-13 | 9 |
endoderm-derived structure | 8.15e-11 | 160 |
endoderm | 8.15e-11 | 160 |
presumptive endoderm | 8.15e-11 | 160 |
extraembryonic membrane | 1.13e-10 | 14 |
membranous layer | 1.13e-10 | 14 |
respiratory tract | 1.42e-10 | 54 |
oral opening | 7.10e-10 | 22 |
segment of respiratory tract | 1.14e-09 | 47 |
respiratory primordium | 1.76e-09 | 38 |
endoderm of foregut | 1.76e-09 | 38 |
upper respiratory tract | 2.81e-09 | 19 |
orifice | 6.50e-09 | 36 |
surface structure | 1.06e-08 | 99 |
foregut | 3.67e-08 | 87 |
mouth | 5.28e-08 | 29 |
stomodeum | 5.28e-08 | 29 |
saliva-secreting gland | 1.48e-07 | 6 |
gland of oral region | 1.48e-07 | 6 |
gland of foregut | 1.48e-07 | 6 |
oral gland | 1.48e-07 | 6 |
oral cavity | 1.48e-07 | 6 |
internal genitalia | 1.52e-07 | 25 |
digestive system | 3.14e-07 | 145 |
digestive tract | 3.14e-07 | 145 |
primitive gut | 3.14e-07 | 145 |
mammary gland | 3.60e-07 | 4 |
mammary bud | 3.60e-07 | 4 |
mammary ridge | 3.60e-07 | 4 |
mammary placode | 3.60e-07 | 4 |
skin epidermis | 7.69e-07 | 15 |
outer epithelium | 7.69e-07 | 15 |
enveloping layer of ectoderm | 7.69e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.30e-22 | 106 |
cell type cancer | 5.56e-19 | 143 |
squamous cell carcinoma | 4.20e-13 | 14 |
cancer | 1.05e-08 | 235 |
disease of cellular proliferation | 3.07e-08 | 239 |
thoracic cancer | 1.19e-07 | 4 |
breast cancer | 1.19e-07 | 4 |