FFCP PHASE1:Hg19::chr1:200011711..200011752,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2494 | |EntrezGene=2494 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7984 | |HGNC=7984 | ||
|TSSclassifier=strong | |||
|UniProt=B4E2P3 | |UniProt=B4E2P3 | ||
|association_with_transcript=0bp_to_ENST00000544748,uc010pph.1_5end | |association_with_transcript=0bp_to_ENST00000544748,uc010pph.1_5end | ||
|cluster_id=chr1:200011711..200011752,+ | |||
|coexpression_cluster_id=C27 | |coexpression_cluster_id=C27 | ||
|description=CAGE_peak_3_at_NR5A2_5end | |description=CAGE_peak_3_at_NR5A2_5end | ||
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|ontology_enrichment_celltype=CL:0000115!9.71e-13!35;CL:0002139!5.54e-12!24;CL:0002078!4.47e-11!44;CL:0000071!1.46e-09!18;CL:0002546!1.46e-09!18;CL:0000213!7.15e-07!57;CL:0000215!7.15e-07!57 | |ontology_enrichment_celltype=CL:0000115!9.71e-13!35;CL:0002139!5.54e-12!24;CL:0002078!4.47e-11!44;CL:0000071!1.46e-09!18;CL:0002546!1.46e-09!18;CL:0000213!7.15e-07!57;CL:0000215!7.15e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000115;1.86e-10;36!CL:0002078;1.17e-09;45!CL:0002139;4.17e-09;24!CL:0000182;6.99e-07;12 | |ontology_enrichment_celltype_v019=CL:0000115;1.86e-10;36!CL:0002078;1.17e-09;45!CL:0002139;4.17e-09;24!CL:0000182;6.99e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0002078,4.14e-12,45;CL:0000115,6.93e-12,36;CL:0002139,4.11e-09,24;CL:0000213,1.93e-07,58;CL:0000215,1.93e-07,58;CL:0000182,6.91e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0007297;3.06e-07;2 | |ontology_enrichment_development_v019=UBERON:0007297;3.06e-07;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.23e-19!115;UBERON:0004921!3.54e-10!129;UBERON:0004185!3.54e-10!129;UBERON:0001986!1.46e-09!18;UBERON:0004638!1.46e-09!18;UBERON:0004852!1.46e-09!18;UBERON:0005409!2.81e-09!35;UBERON:0001007!5.96e-09!155;UBERON:0001555!5.96e-09!155;UBERON:0007026!5.96e-09!155;UBERON:0000477!9.35e-09!286;UBERON:0000468!2.33e-08!659;UBERON:0004111!3.33e-08!241;UBERON:0003135!4.25e-08!11;UBERON:0004119!4.51e-08!169;UBERON:0000925!4.51e-08!169;UBERON:0006595!4.51e-08!169;UBERON:0000059!2.32e-07!11;UBERON:0000160!2.90e-07!27;UBERON:0000487!3.48e-07!22;UBERON:0000025!3.91e-07!194;UBERON:0006914!3.99e-07!25;UBERON:0009854!5.67e-07!23;UBERON:0000077!5.76e-07!130;UBERON:0000467!7.12e-07!625;UBERON:0003914!7.94e-07!118;UBERON:0000480!8.29e-07!626;UBERON:0005177!8.91e-07!107 | |ontology_enrichment_uberon=UBERON:0007023!3.23e-19!115;UBERON:0004921!3.54e-10!129;UBERON:0004185!3.54e-10!129;UBERON:0001986!1.46e-09!18;UBERON:0004638!1.46e-09!18;UBERON:0004852!1.46e-09!18;UBERON:0005409!2.81e-09!35;UBERON:0001007!5.96e-09!155;UBERON:0001555!5.96e-09!155;UBERON:0007026!5.96e-09!155;UBERON:0000477!9.35e-09!286;UBERON:0000468!2.33e-08!659;UBERON:0004111!3.33e-08!241;UBERON:0003135!4.25e-08!11;UBERON:0004119!4.51e-08!169;UBERON:0000925!4.51e-08!169;UBERON:0006595!4.51e-08!169;UBERON:0000059!2.32e-07!11;UBERON:0000160!2.90e-07!27;UBERON:0000487!3.48e-07!22;UBERON:0000025!3.91e-07!194;UBERON:0006914!3.99e-07!25;UBERON:0009854!5.67e-07!23;UBERON:0000077!5.76e-07!130;UBERON:0000467!7.12e-07!625;UBERON:0003914!7.94e-07!118;UBERON:0000480!8.29e-07!626;UBERON:0005177!8.91e-07!107 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;8.92e-17;17!UBERON:0005409;3.55e-15;22!UBERON:0004921;1.38e-10;33!UBERON:0000059;2.48e-10;11!UBERON:0001155;4.93e-09;9!UBERON:0002107;9.64e-08;19!UBERON:0006925;9.64e-08;19!UBERON:0002423;2.66e-07;25!UBERON:0002108;5.91e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000160;8.92e-17;17!UBERON:0005409;3.55e-15;22!UBERON:0004921;1.38e-10;33!UBERON:0000059;2.48e-10;11!UBERON:0001155;4.93e-09;9!UBERON:0002107;9.64e-08;19!UBERON:0006925;9.64e-08;19!UBERON:0002423;2.66e-07;25!UBERON:0002108;5.91e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.72e-17,17;UBERON:0005409,3.50e-13,25;UBERON:0000059,2.61e-10,11;UBERON:0004876,1.32e-09,11;UBERON:0004921,1.88e-09,118;UBERON:0001155,5.43e-09,9;UBERON:0000080,2.24e-08,9;UBERON:0002120,2.24e-08,9;UBERON:0004875,2.24e-08,9;UBERON:0005721,2.24e-08,9;UBERON:0005754,2.24e-08,9;UBERON:0007297,2.24e-08,9;UBERON:0009854,4.95e-08,23;UBERON:0007023,8.51e-08,114;UBERON:0002107,9.56e-08,19;UBERON:0006925,9.56e-08,19;UBERON:0008836,9.56e-08,19;UBERON:0001007,1.80e-07,145;UBERON:0001555,1.80e-07,145;UBERON:0007026,1.80e-07,145;UBERON:0009497,2.65e-07,25;UBERON:0000015,2.65e-07,25;UBERON:0002423,2.65e-07,25;UBERON:0006235,2.65e-07,25;UBERON:0004161,2.65e-07,25;UBERON:0005172,3.22e-07,54;UBERON:0005173,3.22e-07,54;UBERON:0003064,3.69e-07,28;UBERON:0002108,5.91e-07,4;UBERON:0004119,5.94e-07,160;UBERON:0000925,5.94e-07,160;UBERON:0006595,5.94e-07,160;UBERON:0009856,6.08e-07,26;UBERON:0005177,9.25e-07,101 | |||
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| ||
|short_description=p3@NR5A2 | |short_description=p3@NR5A2 | ||
}} | }} |
Latest revision as of 15:49, 19 September 2015
Short description: | p3@NR5A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NR5A2_5end |
Coexpression cluster: | C27_pancreas_temporal_duodenum_salivary_ductus_umbilical_lung |
Association with transcript: | 0bp_to_ENST00000544748, uc010pph.1_5end |
EntrezGene: | NR5A2 |
HGNC: | 7984 |
UniProt: | B4E2P3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meso-epithelial cell | 4.14e-12 | 45 |
endothelial cell | 6.93e-12 | 36 |
endothelial cell of vascular tree | 4.11e-09 | 24 |
lining cell | 1.93e-07 | 58 |
barrier cell | 1.93e-07 | 58 |
hepatocyte | 6.91e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
intestine | 8.72e-17 | 17 |
gastrointestinal system | 3.50e-13 | 25 |
large intestine | 2.61e-10 | 11 |
urogenital ridge | 1.32e-09 | 11 |
subdivision of digestive tract | 1.88e-09 | 118 |
colon | 5.43e-09 | 9 |
mesonephros | 2.24e-08 | 9 |
pronephros | 2.24e-08 | 9 |
nephrogenic cord | 2.24e-08 | 9 |
pronephric mesoderm | 2.24e-08 | 9 |
rostral part of nephrogenic cord | 2.24e-08 | 9 |
presumptive pronephric mesoderm | 2.24e-08 | 9 |
digestive tract diverticulum | 4.95e-08 | 23 |
adult organism | 8.51e-08 | 114 |
liver | 9.56e-08 | 19 |
digestive gland | 9.56e-08 | 19 |
liver bud | 9.56e-08 | 19 |
digestive system | 1.80e-07 | 145 |
digestive tract | 1.80e-07 | 145 |
primitive gut | 1.80e-07 | 145 |
epithelium of foregut-midgut junction | 2.65e-07 | 25 |
anatomical boundary | 2.65e-07 | 25 |
hepatobiliary system | 2.65e-07 | 25 |
foregut-midgut junction | 2.65e-07 | 25 |
septum transversum | 2.65e-07 | 25 |
abdomen element | 3.22e-07 | 54 |
abdominal segment element | 3.22e-07 | 54 |
intermediate mesoderm | 3.69e-07 | 28 |
small intestine | 5.91e-07 | 4 |
endoderm-derived structure | 5.94e-07 | 160 |
endoderm | 5.94e-07 | 160 |
presumptive endoderm | 5.94e-07 | 160 |
sac | 6.08e-07 | 26 |
trunk region element | 9.25e-07 | 101 |