FFCP PHASE1:Hg19::chr22:31488433..31488441,+: Difference between revisions
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|id=chr22:31488433..31488441,+
|short_description=p36@SMTN
|description=CAGE_peak_36_at_SMTN_5end
|association_with_transcript=-12bp_to_ENST00000455608_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6525 | |EntrezGene=6525 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11126 | |HGNC=11126 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-12bp_to_ENST00000455608_5end | |||
|cluster_id=chr22:31488433..31488441,+ | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_36_at_SMTN_5end | |||
|id=chr22:31488433..31488441,+ | |||
|ontology_enrichment_celltype=CL:1001319!2.25e-16!1;CL:1000600!2.25e-16!1 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.35e-66;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!6.27e-32!2;UBERON:0002757!6.27e-32!2;UBERON:0010134!6.27e-32!2;UBERON:0002784!6.27e-32!2;UBERON:0005408!6.27e-32!2;UBERON:0001899!6.27e-32!2;UBERON:0001255!2.97e-31!2;UBERON:0001556!2.97e-31!2;UBERON:0001000!1.21e-16!1;UBERON:0005352!1.21e-16!1;UBERON:0003296!1.66e-16!4;UBERON:0010133!1.66e-16!4;UBERON:0004645!2.25e-16!1;UBERON:0001256!2.25e-16!1;UBERON:0001259!2.25e-16!1;UBERON:0001882!3.07e-16!1;UBERON:0005403!3.07e-16!1;UBERON:0000966!1.85e-13!5;UBERON:0005388!1.85e-13!5;UBERON:0001802!1.85e-13!5;UBERON:0000162!2.24e-10!14;UBERON:0001353!2.24e-10!14;UBERON:0000163!2.24e-10!14;UBERON:0006866!2.24e-10!14;UBERON:0000164!2.24e-10!14;UBERON:0000931!2.24e-10!14;UBERON:0007023!5.84e-10!115;UBERON:0001894!7.64e-10!7;UBERON:0006222!7.64e-10!7;UBERON:0004122!1.01e-09!15;UBERON:0001046!8.58e-08!19;UBERON:0000970!1.29e-07!20;UBERON:0002104!2.82e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.71e-40;5!UBERON:0005388;2.71e-40;5!UBERON:0001802;2.71e-40;5!UBERON:0001905;6.30e-26;2!UBERON:0002757;6.30e-26;2!UBERON:0010134;6.30e-26;2!UBERON:0005408;6.30e-26;2!UBERON:0001899;6.30e-26;2!UBERON:0000970;4.42e-23;20!UBERON:0002104;4.93e-22;21!UBERON:0000020;3.28e-20;23!UBERON:0001032;2.06e-19;24!UBERON:0004456;2.06e-19;24!UBERON:0003296;1.06e-13;4!UBERON:0010133;1.06e-13;4!UBERON:0002784;1.06e-13;4!UBERON:0000019;1.72e-11;19!UBERON:0000047;1.72e-11;19!UBERON:0004088;1.72e-11;19!UBERON:0010230;1.72e-11;19!UBERON:0001456;1.69e-10;21!UBERON:0001894;2.11e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,8.35e-34,6;UBERON:0005388,8.35e-34,6;UBERON:0001802,8.35e-34,6;UBERON:0001905,5.56e-26,2;UBERON:0002757,5.56e-26,2;UBERON:0010134,5.56e-26,2;UBERON:0005408,5.56e-26,2;UBERON:0001899,5.56e-26,2;UBERON:0000970,5.11e-22,21;UBERON:0002104,5.11e-22,21;UBERON:0000020,2.13e-19,24;UBERON:0001032,2.13e-19,24;UBERON:0004456,2.13e-19,24;UBERON:0003296,1.00e-13,4;UBERON:0010133,1.00e-13,4;UBERON:0002784,1.00e-13,4;UBERON:0000019,5.70e-11,20;UBERON:0000047,5.70e-11,20;UBERON:0010312,5.70e-11,20;UBERON:0004088,5.70e-11,20;UBERON:0010230,5.70e-11,20;UBERON:0003072,5.70e-11,20;UBERON:0004128,5.70e-11,20;UBERON:0003071,5.70e-11,20;UBERON:0001456,4.53e-10,22;UBERON:0001894,2.03e-08,7;UBERON:0006222,2.03e-08,7;UBERON:0003056,4.39e-08,61;UBERON:0005085,1.92e-07,31 | |||
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|short_description=p36@SMTN | |||
}} | }} |
Latest revision as of 19:22, 19 September 2015
Short description: | p36@SMTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_36_at_SMTN_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -12bp_to_ENST00000455608_5end |
EntrezGene: | SMTN |
HGNC: | 11126 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retina | 8.35e-34 | 6 |
photoreceptor array | 8.35e-34 | 6 |
posterior segment of eyeball | 8.35e-34 | 6 |
pineal body | 5.56e-26 | 2 |
regional part of epithalamus | 5.56e-26 | 2 |
secretory circumventricular organ | 5.56e-26 | 2 |
circumventricular organ | 5.56e-26 | 2 |
epithalamus | 5.56e-26 | 2 |
eye | 5.11e-22 | 21 |
visual system | 5.11e-22 | 21 |
sense organ | 2.13e-19 | 24 |
sensory system | 2.13e-19 | 24 |
entire sense organ system | 2.13e-19 | 24 |
gland of diencephalon | 1.00e-13 | 4 |
neuroendocrine gland | 1.00e-13 | 4 |
regional part of diencephalon | 1.00e-13 | 4 |
camera-type eye | 5.70e-11 | 20 |
simple eye | 5.70e-11 | 20 |
immature eye | 5.70e-11 | 20 |
ocular region | 5.70e-11 | 20 |
eyeball of camera-type eye | 5.70e-11 | 20 |
optic cup | 5.70e-11 | 20 |
optic vesicle | 5.70e-11 | 20 |
eye primordium | 5.70e-11 | 20 |
face | 4.53e-10 | 22 |
diencephalon | 2.03e-08 | 7 |
future diencephalon | 2.03e-08 | 7 |
pre-chordal neural plate | 4.39e-08 | 61 |
ectodermal placode | 1.92e-07 | 31 |