FFCP PHASE1:Hg19::chr15:90809459..90809470,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51335 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=18077 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NPE2 | |||
|association_with_transcript=-101bp_to_AY049780_5end | |||
|cluster_id=chr15:90809459..90809470,+ | |||
|coexpression_cluster_id=C149 | |||
|description=CAGE_peak_16_at_NGRN_5end | |||
|id=chr15:90809459..90809470,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!1.93e-12!32;UBERON:0001893!2.15e-12!34;UBERON:0002791!7.10e-12!33;UBERON:0001049!1.04e-11!57;UBERON:0005068!1.04e-11!57;UBERON:0006241!1.04e-11!57;UBERON:0007135!1.04e-11!57;UBERON:0002780!1.24e-11!41;UBERON:0001890!1.24e-11!41;UBERON:0006240!1.24e-11!41;UBERON:0002020!1.77e-11!34;UBERON:0003528!1.77e-11!34;UBERON:0003080!3.44e-11!42;UBERON:0000956!3.72e-11!25;UBERON:0000203!3.72e-11!25;UBERON:0002616!4.21e-10!59;UBERON:0000955!1.83e-09!69;UBERON:0006238!1.83e-09!69;UBERON:0002619!5.82e-09!22;UBERON:0001950!6.97e-09!20;UBERON:0001017!8.24e-09!82;UBERON:0005743!5.52e-08!86;UBERON:0003056!4.49e-07!61;UBERON:0000073!6.51e-07!94;UBERON:0001016!6.51e-07!94;UBERON:0003075!9.62e-07!86;UBERON:0007284!9.62e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002021;3.49e-79;5!UBERON:0001950;4.86e-20;20!UBERON:0002619;2.02e-18;22!UBERON:0000956;1.86e-16;25!UBERON:0000203;1.86e-16;25!UBERON:0002791;1.90e-14;32!UBERON:0001869;1.90e-14;32!UBERON:0002780;1.77e-12;41!UBERON:0001890;1.77e-12;41!UBERON:0001893;1.77e-12;34!UBERON:0003528;3.56e-08;34!UBERON:0002020;3.56e-08;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,3.49e-79,5;UBERON:0001950,4.86e-20,20;UBERON:0002619,2.02e-18,22;UBERON:0000956,1.86e-16,25;UBERON:0000203,1.86e-16,25;UBERON:0002791,2.96e-13,32;UBERON:0001869,2.96e-13,32;UBERON:0003528,1.42e-12,34;UBERON:0002020,1.42e-12,34;UBERON:0001893,1.42e-12,34;UBERON:0002780,1.07e-10,41;UBERON:0001890,1.07e-10,41;UBERON:0003080,1.07e-10,41;UBERON:0006240,1.07e-10,41;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0003056,1.20e-07,61;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.125542639594803,0,0.0821005894499457,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0.382273228125229,0,0,0,0,0.393010762749165,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0.0945348171640679,0.443458794925128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0.286836620748814,0.709336764396714,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0.103052529238439,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0.36497735907583,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0.392442930250692,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0.088048434013226,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.128343036279748,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0.280660094433074,0,0.511707249066704,0.160853921143607,0,0,0,0,0,0,0.241718899183244,0.200506470303285,0.0920809889358963,0.114814448164607,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0.7133421029625,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0.140669416410513,0,0,0.211125408127993,0,0,0.251932747854276,0.102268682502155,0,0,0,0.358042349351218,0,0.0986434056369336,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0.173624994933292,0.885741385813839,0.241192877250816,0,0.221158519862449,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0.108647371922008,0.31900115973192,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0.163232808159148,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0.802577647298789,0.234264445725339,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0.416024019039416,0,0,0,0,0,0,0,0.0821154570532092,0,0,0.451961481561065,0,0,0.189932387867636,0.195551382734803,0,0,0.39961921916426,0,0,0,0,0.124252535565433,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0.136203406111576,0,0.275078873194468,0,0.2249738915515,0,0.121499113316049,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0.306345576763462,0,0,0,0.732157589411779,0.1251909307065,0.573409195690071,0.110929051536852,0,0.138348634936231,0,0,0,0.235265819698172,0,0.144921028610825,0.149254802886874,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0.150257608997218,0.380805212168795,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0,0.537266523244462,0.308801447160972,0,0.176689145945881,0,0,0,0,0,0.276516872303462,0,0.132864840313363,0,0.655219697692825,0,0,0,0,0,0,0.184105950251841,0.279759015438889,0,0,0.107824811396682,0,0,0,0,0.123935764259002,0,0,0,0.80057074828547,0,0,0.128458450192919,1.41696576325585,0.159633859057151,5.74325819874114,0.504143392443436,0,0.161475645631851,0,0,0.11796972334774,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.0675375846183947,0.781078098613847,0,0.19024743058172,0,0,0,0,0,0,0.672567444437648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0.22910686854405,0,0,0.111855431797792,0,0,0,0.102662806856247,0,0.485710993059139,0,0.198950775161368,0.118920090777569,0.22589216407792,0,0,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0.872701380680755,0,0,0,0,0,0.218531143927391,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.124149428591716,0.33639558774184,0.12729431655633,0,0,0.342233301085281,0,0,0.332660356546013,0,0,0,0.0898252021065869,0,0,0.406896178315738,0,0,0 | |||
|short_description=p16@NGRN | |||
}} |
Latest revision as of 19:35, 19 September 2015
Short description: | p16@NGRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_NGRN_5end |
Coexpression cluster: | C149_occipital_medial_brain_amygdala_parietal_cerebral_cerebellum |
Association with transcript: | -101bp_to_AY049780_5end |
EntrezGene: | NGRN |
HGNC: | 18077 |
UniProt: | Q9NPE2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 3.49e-79 | 5 |
neocortex | 4.86e-20 | 20 |
regional part of cerebral cortex | 2.02e-18 | 22 |
cerebral cortex | 1.86e-16 | 25 |
pallium | 1.86e-16 | 25 |
regional part of telencephalon | 2.96e-13 | 32 |
cerebral hemisphere | 2.96e-13 | 32 |
brain grey matter | 1.42e-12 | 34 |
gray matter | 1.42e-12 | 34 |
telencephalon | 1.42e-12 | 34 |
regional part of forebrain | 1.07e-10 | 41 |
forebrain | 1.07e-10 | 41 |
anterior neural tube | 1.07e-10 | 41 |
future forebrain | 1.07e-10 | 41 |
regional part of nervous system | 1.34e-08 | 53 |
regional part of brain | 1.34e-08 | 53 |
neural tube | 3.28e-08 | 56 |
neural rod | 3.28e-08 | 56 |
future spinal cord | 3.28e-08 | 56 |
neural keel | 3.28e-08 | 56 |
pre-chordal neural plate | 1.20e-07 | 61 |
brain | 6.59e-07 | 68 |
future brain | 6.59e-07 | 68 |