FFCP PHASE1:Hg19::chr19:54711974..54711985,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:54711974..54711985,-
|short_description=p9@RPS9
|description=CAGE_peak_9_at_RPS9_5end
|association_with_transcript=-459bp_to_BC020462_5end
|EntrezGene=62...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6203 | |EntrezGene=6203 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=10442 | |HGNC=10442 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-459bp_to_BC020462_5end | |||
|cluster_id=chr19:54711974..54711985,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_9_at_RPS9_5end | |||
|id=chr19:54711974..54711985,- | |||
|ontology_enrichment_celltype=CL:0000766!1.40e-68!76;CL:0002057!5.69e-65!42;CL:0000860!5.80e-60!45;CL:0000557!4.82e-51!71;CL:0000839!3.17e-49!70;CL:0000763!1.15e-48!112;CL:0000049!1.15e-48!112;CL:0002009!7.78e-48!65;CL:0002194!6.59e-47!63;CL:0000576!6.59e-47!63;CL:0000040!6.59e-47!63;CL:0000559!6.59e-47!63;CL:0000738!8.25e-40!140;CL:0000037!1.11e-32!172;CL:0000566!1.11e-32!172;CL:0002032!1.54e-31!165;CL:0000837!1.54e-31!165;CL:0000988!4.13e-30!182;CL:0002031!1.98e-27!124;CL:0002087!7.51e-26!119;CL:0002393!4.29e-22!9;CL:0002397!4.29e-22!9;CL:0000094!4.68e-22!8;CL:0000081!1.38e-15!11;CL:0000775!1.91e-09!3;CL:0000767!4.32e-09!3;CL:0000134!1.28e-08!358;CL:0000875!1.49e-08!3;CL:0002396!1.49e-08!3;CL:0002320!3.28e-08!365;CL:0000771!6.48e-07!2;CL:0000219!8.68e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000094;2.72e-49;8!CL:0000081;1.45e-35;11!CL:0000860;1.36e-23;33!CL:0002057;1.36e-23;33!CL:0000775;7.73e-20;3!CL:0000766;1.40e-19;69!CL:0000767;5.47e-19;3!CL:0000473;6.26e-17;39!CL:0000234;6.26e-17;39!CL:0000576;1.98e-15;48!CL:0000771;4.84e-14;2!CL:0000763;4.96e-12;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,1.75e-49,8;CL:0000766,2.81e-45,72;CL:0000081,1.05e-35,11;CL:0000763,8.94e-29,108;CL:0000049,8.94e-29,108;CL:0000860,7.43e-27,42;CL:0002057,7.43e-27,42;CL:0000738,4.79e-24,136;CL:0000473,3.80e-23,48;CL:0000234,3.80e-23,48;CL:0000839,6.28e-21,66;CL:0000557,1.42e-20,67;CL:0000775,6.39e-20,3;CL:0000767,4.26e-19,3;CL:0000037,1.45e-18,168;CL:0002194,5.91e-18,59;CL:0000576,5.91e-18,59;CL:0000040,5.91e-18,59;CL:0000559,5.91e-18,59;CL:0002032,8.33e-18,161;CL:0000837,8.33e-18,161;CL:0000988,2.23e-17,177;CL:0002009,2.76e-17,61;CL:0000771,4.85e-14,2;CL:0002031,3.90e-10,120;CL:0002087,2.88e-09,115 | |||
|ontology_enrichment_development_v019=CL:0002057;1.87e-19;42!CL:0000049;2.30e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.26e-54!102;UBERON:0003061!2.26e-54!102;UBERON:0002193!1.08e-52!112;UBERON:0002371!4.53e-44!80;UBERON:0001474!3.16e-40!86;UBERON:0004765!1.30e-32!101;UBERON:0001434!1.30e-32!101;UBERON:0002405!1.59e-30!115;UBERON:0003081!1.10e-19!216;UBERON:0000178!4.26e-16!15;UBERON:0000179!4.26e-16!15;UBERON:0000463!4.26e-16!15;UBERON:0002204!1.93e-15!167;UBERON:0002384!1.17e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.51e-19;15!UBERON:0000179;3.51e-19;15!UBERON:0000463;3.51e-19;15!UBERON:0002390;1.73e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.35e-29,98;UBERON:0003061,6.35e-29,98;UBERON:0002193,7.51e-26,108;UBERON:0000178,3.47e-19,15;UBERON:0000179,3.47e-19,15;UBERON:0000463,3.47e-19,15;UBERON:0002371,8.75e-18,76;UBERON:0001474,2.91e-16,82;UBERON:0004765,1.52e-14,90;UBERON:0002405,5.62e-14,93;UBERON:0001434,8.79e-13,100;UBERON:0003081,1.15e-11,203 | |||
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| ||
|short_description=p9@RPS9 | |||
}} | }} |
Latest revision as of 21:38, 19 September 2015
Short description: | p9@RPS9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_RPS9_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | -459bp_to_BC020462_5end |
EntrezGene: | RPS9 |
HGNC: | 10442 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 1.75e-49 | 8 |
myeloid leukocyte | 2.81e-45 | 72 |
blood cell | 1.05e-35 | 11 |
myeloid cell | 8.94e-29 | 108 |
common myeloid progenitor | 8.94e-29 | 108 |
classical monocyte | 7.43e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.43e-27 | 42 |
leukocyte | 4.79e-24 | 136 |
defensive cell | 3.80e-23 | 48 |
phagocyte | 3.80e-23 | 48 |
myeloid lineage restricted progenitor cell | 6.28e-21 | 66 |
granulocyte monocyte progenitor cell | 1.42e-20 | 67 |
neutrophil | 6.39e-20 | 3 |
basophil | 4.26e-19 | 3 |
hematopoietic stem cell | 1.45e-18 | 168 |
monopoietic cell | 5.91e-18 | 59 |
monocyte | 5.91e-18 | 59 |
monoblast | 5.91e-18 | 59 |
promonocyte | 5.91e-18 | 59 |
hematopoietic oligopotent progenitor cell | 8.33e-18 | 161 |
hematopoietic multipotent progenitor cell | 8.33e-18 | 161 |
hematopoietic cell | 2.23e-17 | 177 |
macrophage dendritic cell progenitor | 2.76e-17 | 61 |
eosinophil | 4.85e-14 | 2 |
hematopoietic lineage restricted progenitor cell | 3.90e-10 | 120 |
nongranular leukocyte | 2.88e-09 | 115 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.35e-29 | 98 |
blood island | 6.35e-29 | 98 |
hemolymphoid system | 7.51e-26 | 108 |
blood | 3.47e-19 | 15 |
haemolymphatic fluid | 3.47e-19 | 15 |
organism substance | 3.47e-19 | 15 |
bone marrow | 8.75e-18 | 76 |
bone element | 2.91e-16 | 82 |
skeletal element | 1.52e-14 | 90 |
immune system | 5.62e-14 | 93 |
skeletal system | 8.79e-13 | 100 |
lateral plate mesoderm | 1.15e-11 | 203 |