FFCP PHASE1:Hg19::chr3:9834375..9834455,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10474 | |EntrezGene=10474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19422 | |HGNC=19422 | ||
|TSSclassifier=strong | |||
|UniProt=O75528 | |UniProt=O75528 | ||
|association_with_transcript=0bp_to_ENST00000301964,ENST00000343450,NM_006354,NM_133480,uc003bsx.1,uc003bsy.2_5end | |association_with_transcript=0bp_to_ENST00000301964,ENST00000343450,NM_006354,NM_133480,uc003bsx.1,uc003bsy.2_5end | ||
|cluster_id=chr3:9834375..9834455,- | |||
|description=CAGE_peak_2_at_TADA3_5end | |description=CAGE_peak_2_at_TADA3_5end | ||
|id=chr3:9834375..9834455,- | |id=chr3:9834375..9834455,- | ||
|ontology_enrichment_celltype=CL:0002319!9.56e-09!25;CL:0000133!8.76e-08!59 | |ontology_enrichment_celltype=CL:0002319!9.56e-09!25;CL:0000133!8.76e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:0002319;8.55e-09;25 | |ontology_enrichment_celltype_v019=CL:0002319;8.55e-09;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,9.56e-09,25;CL:0000133,8.76e-08,59 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.36e-12!94;UBERON:0001016!9.36e-12!94;UBERON:0000924!3.45e-10!173;UBERON:0006601!3.45e-10!173;UBERON:0005743!1.03e-09!86;UBERON:0004121!1.25e-09!169;UBERON:0001017!1.47e-09!82;UBERON:0002346!2.09e-08!90;UBERON:0000475!2.89e-08!365;UBERON:0003056!2.93e-08!61;UBERON:0003075!7.69e-08!86;UBERON:0007284!7.69e-08!86;UBERON:0001049!2.01e-07!57;UBERON:0005068!2.01e-07!57;UBERON:0006241!2.01e-07!57;UBERON:0007135!2.01e-07!57;UBERON:0000955!3.46e-07!69;UBERON:0006238!3.46e-07!69;UBERON:0000956!8.04e-07!25;UBERON:0000203!8.04e-07!25 | |ontology_enrichment_uberon=UBERON:0000073!9.36e-12!94;UBERON:0001016!9.36e-12!94;UBERON:0000924!3.45e-10!173;UBERON:0006601!3.45e-10!173;UBERON:0005743!1.03e-09!86;UBERON:0004121!1.25e-09!169;UBERON:0001017!1.47e-09!82;UBERON:0002346!2.09e-08!90;UBERON:0000475!2.89e-08!365;UBERON:0003056!2.93e-08!61;UBERON:0003075!7.69e-08!86;UBERON:0007284!7.69e-08!86;UBERON:0001049!2.01e-07!57;UBERON:0005068!2.01e-07!57;UBERON:0006241!2.01e-07!57;UBERON:0007135!2.01e-07!57;UBERON:0000955!3.46e-07!69;UBERON:0006238!3.46e-07!69;UBERON:0000956!8.04e-07!25;UBERON:0000203!8.04e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0000956;8.89e-07;25!UBERON:0000203;8.89e-07;25 | |ontology_enrichment_uberon_v019=UBERON:0000956;8.89e-07;25!UBERON:0000203;8.89e-07;25 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.76e-11,89;UBERON:0004121,7.62e-10,171;UBERON:0000924,7.62e-10,171;UBERON:0006601,7.62e-10,171;UBERON:0001017,2.95e-09,81;UBERON:0002346,1.48e-08,86;UBERON:0003056,3.32e-08,61;UBERON:0003075,5.51e-08,82;UBERON:0007284,5.51e-08,82;UBERON:0010371,5.68e-08,104;UBERON:0001049,4.01e-07,56;UBERON:0005068,4.01e-07,56;UBERON:0006241,4.01e-07,56;UBERON:0007135,4.01e-07,56;UBERON:0000955,6.58e-07,68;UBERON:0006238,6.58e-07,68;UBERON:0000956,8.04e-07,25;UBERON:0000203,8.04e-07,25 | |||
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| ||
|short_description=p2@TADA3 | |short_description=p2@TADA3 | ||
}} | }} |
Latest revision as of 22:20, 19 September 2015
Short description: | p2@TADA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TADA3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000301964, ENST00000343450, NM_006354, NM_133480, uc003bsx.1, uc003bsy.2_5end |
EntrezGene: | TADA3 |
HGNC: | 19422 |
UniProt: | O75528 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 9.56e-09 | 25 |
neurectodermal cell | 8.76e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.76e-11 | 89 |
ectoderm-derived structure | 7.62e-10 | 171 |
ectoderm | 7.62e-10 | 171 |
presumptive ectoderm | 7.62e-10 | 171 |
central nervous system | 2.95e-09 | 81 |
neurectoderm | 1.48e-08 | 86 |
pre-chordal neural plate | 3.32e-08 | 61 |
neural plate | 5.51e-08 | 82 |
presumptive neural plate | 5.51e-08 | 82 |
ecto-epithelium | 5.68e-08 | 104 |
neural tube | 4.01e-07 | 56 |
neural rod | 4.01e-07 | 56 |
future spinal cord | 4.01e-07 | 56 |
neural keel | 4.01e-07 | 56 |
brain | 6.58e-07 | 68 |
future brain | 6.58e-07 | 68 |
cerebral cortex | 8.04e-07 | 25 |
pallium | 8.04e-07 | 25 |