FFCP PHASE1:Hg19::chr3:121796659..121796672,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=942 | |EntrezGene=942 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1705 | |HGNC=1705 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-18bp_to_ENST00000483949_5end | |association_with_transcript=-18bp_to_ENST00000483949_5end | ||
|cluster_id=chr3:121796659..121796672,+ | |||
|coexpression_cluster_id=C21 | |coexpression_cluster_id=C21 | ||
|description=CAGE_peak_5_at_CD86_5end | |description=CAGE_peak_5_at_CD86_5end | ||
|id=chr3:121796659..121796672,+ | |id=chr3:121796659..121796672,+ | ||
|ontology_enrichment_celltype=CL:0000738!2.73e-27!140;CL:0000988!1.27e-25!182;CL:0002087!6.40e-25!119;CL:0002031!7.91e-24!124;CL:0000037!2.69e-22!172;CL:0000566!2.69e-22!172;CL:0002032!5.05e-22!165;CL:0000837!5.05e-22!165;CL:0000945!2.39e-19!24;CL:0000826!2.39e-19!24;CL:0000990!2.39e-16!8;CL:0000542!8.51e-15!53;CL:0000051!8.51e-15!53;CL:0000453!4.38e-14!5;CL:0000451!2.89e-13!10;CL:0000838!4.46e-13!52;CL:0002009!7.69e-13!65;CL:0002057!3.43e-12!42;CL:0000080!3.93e-12!6;CL:0000840!1.78e-11!5;CL:0001029!1.78e-11!5;CL:0000557!1.81e-11!71;CL:0000860!3.28e-11!45;CL:0001014!6.63e-10!2;CL:0001016!6.63e-10!2;CL:0002194!6.82e-10!63;CL:0000576!6.82e-10!63;CL:0000040!6.82e-10!63;CL:0000559!6.82e-10!63;CL:0000785!3.24e-09!2;CL:0000955!3.24e-09!2;CL:0000818!3.24e-09!2;CL:0000954!3.24e-09!2;CL:0000816!3.24e-09!2;CL:0000763!4.48e-09!112;CL:0000049!4.48e-09!112;CL:0000839!1.27e-08!70;CL:0000766!1.00e-07!76 | |ontology_enrichment_celltype=CL:0000738!2.73e-27!140;CL:0000988!1.27e-25!182;CL:0002087!6.40e-25!119;CL:0002031!7.91e-24!124;CL:0000037!2.69e-22!172;CL:0000566!2.69e-22!172;CL:0002032!5.05e-22!165;CL:0000837!5.05e-22!165;CL:0000945!2.39e-19!24;CL:0000826!2.39e-19!24;CL:0000990!2.39e-16!8;CL:0000542!8.51e-15!53;CL:0000051!8.51e-15!53;CL:0000453!4.38e-14!5;CL:0000451!2.89e-13!10;CL:0000838!4.46e-13!52;CL:0002009!7.69e-13!65;CL:0002057!3.43e-12!42;CL:0000080!3.93e-12!6;CL:0000840!1.78e-11!5;CL:0001029!1.78e-11!5;CL:0000557!1.81e-11!71;CL:0000860!3.28e-11!45;CL:0001014!6.63e-10!2;CL:0001016!6.63e-10!2;CL:0002194!6.82e-10!63;CL:0000576!6.82e-10!63;CL:0000040!6.82e-10!63;CL:0000559!6.82e-10!63;CL:0000785!3.24e-09!2;CL:0000955!3.24e-09!2;CL:0000818!3.24e-09!2;CL:0000954!3.24e-09!2;CL:0000816!3.24e-09!2;CL:0000763!4.48e-09!112;CL:0000049!4.48e-09!112;CL:0000839!1.27e-08!70;CL:0000766!1.00e-07!76 | ||
|ontology_enrichment_celltype_v019=CL:0000945;2.22e-11;24!CL:0000860;1.15e-10;33!CL:0002057;1.15e-10;33!CL:0002087;1.16e-08;104!CL:0000473;6.29e-07;39!CL:0000234;6.29e-07;39!CL:0001014;7.20e-07;2!CL:0001016;7.20e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,7.47e-16,120;CL:0000988,8.35e-16,177;CL:0002087,3.57e-14,115;CL:0000738,8.99e-14,136;CL:0000945,2.17e-11,24;CL:0000826,2.17e-11,24;CL:0002032,2.44e-11,161;CL:0000837,2.44e-11,161;CL:0000037,8.73e-11,168;CL:0000838,8.51e-10,52;CL:0000542,1.34e-09,53;CL:0000051,1.34e-09,53;CL:0000860,5.35e-09,42;CL:0002057,5.35e-09,42;CL:0002009,5.16e-08,61;CL:0000473,7.98e-08,48;CL:0000234,7.98e-08,48;CL:0000557,3.01e-07,67;CL:0001014,7.20e-07,2;CL:0001016,7.20e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;6.30e-07;42 | |||
|ontology_enrichment_disease=DOID:0060058!7.43e-20!10 | |ontology_enrichment_disease=DOID:0060058!7.43e-20!10 | ||
|ontology_enrichment_disease_v019=DOID:0060060;9.92e-13;1!DOID:0060061;9.92e-13;1!DOID:8691;9.92e-13;1!DOID:630;1.25e-12;1!DOID:0050177;1.25e-12;1!DOID:0050427;1.25e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,9.92e-13,1;DOID:0060061,9.92e-13,1;DOID:8691,9.92e-13,1;DOID:630,1.25e-12,1;DOID:0050177,1.25e-12,1;DOID:0050427,1.25e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.16e-16!102;UBERON:0003061!2.16e-16!102;UBERON:0002193!1.86e-14!112;UBERON:0002371!8.48e-10!80;UBERON:0001474!7.01e-09!86;UBERON:0002405!1.02e-08!115;UBERON:0004765!4.50e-07!101;UBERON:0001434!4.50e-07!101 | |ontology_enrichment_uberon=UBERON:0002390!2.16e-16!102;UBERON:0003061!2.16e-16!102;UBERON:0002193!1.86e-14!112;UBERON:0002371!8.48e-10!80;UBERON:0001474!7.01e-09!86;UBERON:0002405!1.02e-08!115;UBERON:0004765!4.50e-07!101;UBERON:0001434!4.50e-07!101 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;6.62e-11;10!UBERON:0000178;1.95e-07;15!UBERON:0000179;1.95e-07;15!UBERON:0000463;1.95e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.94e-12,98;UBERON:0003061,4.94e-12,98;UBERON:0002331,6.62e-11,10;UBERON:0000358,6.62e-11,10;UBERON:0000307,6.62e-11,10;UBERON:0000091,6.62e-11,10;UBERON:0000087,6.62e-11,10;UBERON:0007010,6.62e-11,10;UBERON:0007806,6.62e-11,10;UBERON:0008780,6.62e-11,10;UBERON:0005728,6.62e-11,10;UBERON:0002193,8.68e-11,108;UBERON:0000178,1.95e-07,15;UBERON:0000179,1.95e-07,15;UBERON:0000463,1.95e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.132949635666,3.69452652524756,2.2826126580967,0,0,0,0,0,0,0.0774672005803016,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0.822335776043652,0.619412741790207,0,0,0.236482229888585,0,1.93645405075148,0,0,0,0,0,0,0,0,0,0,0.870627715885752,2.26954089876456,4.35975574296902,0.251248665256743,0,0.217188844705117,1.21079900526674,1.47311054395026,6.32924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334231370655521,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557409525377156,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445773537109913,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,1.47701766553283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.4025214013289,34.5979029050208,31.9531165486693,0,0,0,0.182454789215666,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.04640914842423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.899895566206002,4.6428117273477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.395223263795889,0.730755590285376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0,0.327130788511688,0,0,0,12.7991933347155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691403925334676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79717548439659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.129177819672012,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.09080135376143 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.132949635666,3.69452652524756,2.2826126580967,0,0,0,0,0,0,0.0774672005803016,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0.822335776043652,0.619412741790207,0,0,0.236482229888585,0,1.93645405075148,0,0,0,0,0,0,0,0,0,0,0.870627715885752,2.26954089876456,4.35975574296902,0.251248665256743,0,0.217188844705117,1.21079900526674,1.47311054395026,6.32924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334231370655521,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557409525377156,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445773537109913,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,1.47701766553283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.4025214013289,34.5979029050208,31.9531165486693,0,0,0,0.182454789215666,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.04640914842423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.899895566206002,4.6428117273477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.395223263795889,0.730755590285376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0,0.327130788511688,0,0,0,12.7991933347155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691403925334676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79717548439659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.129177819672012,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.09080135376143 | ||
|short_description=p5@CD86 | |short_description=p5@CD86 | ||
}} | }} |
Latest revision as of 23:15, 19 September 2015
Short description: | p5@CD86 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CD86_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | -18bp_to_ENST00000483949_5end |
EntrezGene: | CD86 |
HGNC: | 1705 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 7.47e-16 | 120 |
hematopoietic cell | 8.35e-16 | 177 |
nongranular leukocyte | 3.57e-14 | 115 |
leukocyte | 8.99e-14 | 136 |
lymphocyte of B lineage | 2.17e-11 | 24 |
pro-B cell | 2.17e-11 | 24 |
hematopoietic oligopotent progenitor cell | 2.44e-11 | 161 |
hematopoietic multipotent progenitor cell | 2.44e-11 | 161 |
hematopoietic stem cell | 8.73e-11 | 168 |
lymphoid lineage restricted progenitor cell | 8.51e-10 | 52 |
lymphocyte | 1.34e-09 | 53 |
common lymphoid progenitor | 1.34e-09 | 53 |
classical monocyte | 5.35e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.35e-09 | 42 |
macrophage dendritic cell progenitor | 5.16e-08 | 61 |
defensive cell | 7.98e-08 | 48 |
phagocyte | 7.98e-08 | 48 |
granulocyte monocyte progenitor cell | 3.01e-07 | 67 |
CD1a-positive Langerhans cell | 7.20e-07 | 2 |
immature CD1a-positive Langerhans cell | 7.20e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.94e-12 | 98 |
blood island | 4.94e-12 | 98 |
umbilical cord | 6.62e-11 | 10 |
blastocyst | 6.62e-11 | 10 |
blastula | 6.62e-11 | 10 |
bilaminar disc | 6.62e-11 | 10 |
inner cell mass | 6.62e-11 | 10 |
cleaving embryo | 6.62e-11 | 10 |
connecting stalk | 6.62e-11 | 10 |
inner cell mass derived epiblast | 6.62e-11 | 10 |
extraembryonic mesoderm | 6.62e-11 | 10 |
hemolymphoid system | 8.68e-11 | 108 |
blood | 1.95e-07 | 15 |
haemolymphatic fluid | 1.95e-07 | 15 |
organism substance | 1.95e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 9.92e-13 | 1 |
cutaneous T cell lymphoma | 9.92e-13 | 1 |
mycosis fungoides | 9.92e-13 | 1 |
genetic disease | 1.25e-12 | 1 |
monogenic disease | 1.25e-12 | 1 |
xeroderma pigmentosum | 1.25e-12 | 1 |