FFCP PHASE1:Hg19::chr5:125759251..125759262,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr5:125759251..125759262,+
|short_description=p13@GRAMD3
|description=CAGE_peak_13_at_GRAMD3_5end
|association_with_transcript=87bp_to_ENST00000505720,ENST0000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=65983 | |EntrezGene=65983 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24911 | |HGNC=24911 | ||
|TSSclassifier=strong | |||
|UniProt=D6RFH3,D6R9P9 | |UniProt=D6RFH3,D6R9P9 | ||
|association_with_transcript=87bp_to_ENST00000505720,ENST00000513978,ENST00000514099_5end | |||
|cluster_id=chr5:125759251..125759262,+ | |||
|coexpression_cluster_id=C1274 | |||
|description=CAGE_peak_13_at_GRAMD3_5end | |||
|id=chr5:125759251..125759262,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002559;7.70e-16;5!CL:0002580;2.04e-11;3!CL:0002579;5.63e-11;3!CL:0000346;3.59e-10;3!CL:1000428;3.59e-10;3!CL:0002334;6.38e-10;12!CL:0000197;1.66e-09;6!CL:0000098;1.66e-09;6!CL:0002167;1.66e-09;6!CL:0002617;7.07e-08;2!CL:0002561;2.32e-07;2!CL:0002536;5.34e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002559,3.50e-16,5;CL:0002580,2.20e-11,3;CL:0002579,4.44e-11,3;CL:0000346,2.40e-10,3;CL:1000428,2.40e-10,3;CL:0002334,5.90e-10,12;CL:0000197,1.62e-09,6;CL:0000098,1.62e-09,6;CL:0002167,1.62e-09,6;CL:0002617,6.02e-08,2;CL:0002561,1.56e-07,2;CL:0002536,2.87e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.12e-09;3!UBERON:0003057;1.12e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.17e-13!57;UBERON:0005068!1.17e-13!57;UBERON:0006241!1.17e-13!57;UBERON:0007135!1.17e-13!57;UBERON:0000955!8.38e-13!69;UBERON:0006238!8.38e-13!69;UBERON:0001017!1.00e-12!82;UBERON:0005743!1.02e-12!86;UBERON:0002616!4.02e-12!59;UBERON:0004121!4.40e-12!169;UBERON:0000475!1.17e-11!365;UBERON:0000924!3.47e-11!173;UBERON:0006601!3.47e-11!173;UBERON:0007023!5.46e-11!115;UBERON:0000073!7.51e-11!94;UBERON:0001016!7.51e-11!94;UBERON:0003075!2.07e-10!86;UBERON:0007284!2.07e-10!86;UBERON:0000153!5.80e-10!129;UBERON:0007811!5.80e-10!129;UBERON:0000033!6.47e-10!123;UBERON:0003080!1.21e-09!42;UBERON:0002346!3.22e-09!90;UBERON:0002780!3.64e-09!41;UBERON:0001890!3.64e-09!41;UBERON:0006240!3.64e-09!41;UBERON:0002020!1.04e-07!34;UBERON:0003528!1.04e-07!34;UBERON:0001893!1.15e-07!34;UBERON:0002791!3.11e-07!33;UBERON:0001869!8.48e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0002073;7.70e-16;5!UBERON:0003688;2.06e-14;6!UBERON:0002358;2.06e-14;6!UBERON:0003684;2.06e-14;6!UBERON:0001178;2.06e-14;6!UBERON:0000412;3.59e-10;3!UBERON:0001992;3.59e-10;3!UBERON:0002240;1.12e-09;3!UBERON:0005174;1.12e-09;3!UBERON:0001137;1.12e-09;3!UBERON:0004457;1.83e-09;9!UBERON:0000042;1.83e-09;9!UBERON:0000310;1.43e-08;10!UBERON:0002298;1.78e-08;6!UBERON:0001443;9.46e-08;11!UBERON:0005933;2.32e-07;2!UBERON:0005942;2.32e-07;2!UBERON:0005932;2.32e-07;2!UBERON:0001897;5.34e-07;2!UBERON:0010225;5.34e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002073,3.50e-16,5;UBERON:0005086,3.50e-16,5;UBERON:0003688,1.85e-14,6;UBERON:0002358,1.85e-14,6;UBERON:0003684,1.85e-14,6;UBERON:0001178,1.85e-14,6;UBERON:0000412,2.40e-10,3;UBERON:0001992,2.40e-10,3;UBERON:0001049,8.26e-10,56;UBERON:0005068,8.26e-10,56;UBERON:0006241,8.26e-10,56;UBERON:0007135,8.26e-10,56;UBERON:0002240,1.37e-09,3;UBERON:0005174,1.37e-09,3;UBERON:0001137,1.37e-09,3;UBERON:0003076,5.13e-09,15;UBERON:0003057,5.13e-09,15;UBERON:0000310,1.37e-08,10;UBERON:0002298,2.08e-08,6;UBERON:0001443,9.13e-08,11;UBERON:0010371,1.03e-07,104;UBERON:0001017,1.44e-07,81;UBERON:0004121,1.49e-07,171;UBERON:0000924,1.49e-07,171;UBERON:0006601,1.49e-07,171;UBERON:0005933,1.56e-07,2;UBERON:0005942,1.56e-07,2;UBERON:0005932,1.56e-07,2;UBERON:0001897,2.37e-07,2;UBERON:0010225,2.37e-07,2;UBERON:0002199,2.41e-07,46;UBERON:0002416,2.41e-07,46;UBERON:0002097,4.65e-07,41;UBERON:0004457,5.23e-07,12;UBERON:0000042,5.23e-07,12 | |||
|phase1_expression=3.45188920614058,2.5692062866918,6.06103937612676,3.00219895059391,0.893922188854576,0,2.53299878168311,0,0,0,0,1.96597234917155,1.31883489114227,0.123766352960047,0,0.672325146451775,1.20538905604795,0,0,0,0.408001382488506,0,0,0,0.125542639594803,0,0.0821005894499457,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0.0945348171640679,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,0.25326102332916,1.85372853138506,0.573673241497627,0,0,0,0.49333509683432,0,0.134710672069688,0,0,0,0.234321431833797,0,0.570471821544449,0,0,0.161872944368132,0,0,0,0,0,0.494533858557114,0,0,0,0.125118519871964,0.554128230968366,0.438977620880838,1.22595118319608,0,0,0.89694817844431,0.213557388818567,1.27159140695737,0.900273288253207,0.721367704669072,1.03056216018252,0.558350568994769,2.02531598689519,2.43592512902997,0,0.920498986422993,1.13152239773168,0,0.604512589365842,0.847802961552438,0.193260853163297,0.545492241181669,0,0.121973706129595,0.132529768321485,0,0,0,0,1.56449532329816,3.21620469096443,1.38134921352481,2.78620756819187,1.44375896333917,0,0.505754070234305,0,0.992645754591546,0.217879444092406,0.71181185733329,0.134831308160164,0.392442930250692,0,0,0,0.4115740113314,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0,0.0925884451585296,0.325808305310325,0,0,0,0.117408694235822,0,0.462985512576611,0,0,0,0,0.234004265139238,0.148631162288728,0,1.17587489739202,0.567100388969546,0.806026704325635,0.581267877027924,0.383382679165211,0.985326475791887,0,0,0.144119953416961,0,0.253991577168676,0,0,0,0.205654985406647,0,0,0.112131084345361,0.43596006883328,0.2933531432838,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,1.74306691720059,0.299918973546171,0,0,0,0.718874566474748,0,1.42636905040718,0.289562613335158,0,0.895304816199478,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0.271265023699736,3.53550464602372,4.81758269752337,3.94256037584837,2.22568688486155,0,0,0,0.664225598535437,0,0.695068915744663,0.195801157462741,0,0,0,0,0.303127571446259,0,0.604780586659361,8.43566546583841,10.4354141835882,3.08726103876381,4.22859192543813,2.55853624533352,2.57366273829772,0,0,0.177561725313127,0.164254312027618,0,0,0,0.40101294060657,0.184161977871793,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,1.6068392984416,0.193341436584244,0,0.15350367472613,0.137836572484531,0,0,0.340906509664404,0.0890320356467374,0.330569830721956,0.192190067365106,1.53135254993501,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0.744316738719335,0.316379424718726,0.38126038784765,0,0.42793898803392,0,0.78494864019923,0.179872457583315,0,0.235624804691373,0,0,0,0,0,1.05650146756755,0.136499911407986,0,0,0,0,0,0,0,0.202910376962704,0,0,0.143411352204052,0,0,0,0.211107635297664,0,0,0,0.288666338176536,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,1.22864280839693,0,0.703347082052564,0.111308705022906,0,0,0.19924798825107,0,0,0.102268682502155,0,3.42143546427988,0.0898683511473268,0,0,0.0986434056369336,0,0,1.93866549219044,0.74214478529481,1.99613798001194,0.260427761085233,0.174919999992391,0.724999575434793,0.1137934482855,0,0,0,0,0,0,0.844175070377856,0,0.552896299656123,0.591095237907095,0.438770794307945,0.10893846351899,0.278847488557207,0.923403102045565,0.569710279235006,0,0.0897576444097721,0.217294743844016,0.31900115973192,0.915975934018623,0.533034776018635,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,2.08943512240099,0,1.1713222286267,0,0,0.485560759068186,0.394584402849391,0,0.30607276163049,0.379119477770928,0,0,0,0,0,0,0,0,0.520679215005393,0.195984794828755,0,0.17472666824203,1.71986032471617,0,0.146178634172371,0,0.193978032976839,0.176512253383001,0,0.137041924646751,0,0.886351143382302,0.195551382734803,0.0801588202515337,0,0.19980960958213,0,0,0.171594997861965,0,0,0,0,0.104602846312333,0,0.288950589901519,2.40168115483916,0.684526894459965,0,0,0,0.558564802544508,0.458320848023367,0,0,0,0,0.335917362433631,0,0,0,0,0,0,0.169346664131569,0,1.22583065500418,0,0,0.415440338029185,1.349843349309,0,1.09349201984444,0,0.236417121897595,0.0524545881349981,0.105600336519406,0,0.959575986597226,0.714695326373367,0,0,0,0,0.326587360109409,0,0,0.511164065356265,0,0.146552233678082,0,1.29282956361551,0.92562821219883,0,0,0,0.157204305099666,0,0,0,0.121792598380896,0,0,0.2506898940227,0,0,0,0,0.732157589411779,0.3755727921195,0,1.33114861844223,2.29756690883119,0,0.249960815924213,0.151649117541648,0,0,0,0,0.298509605773748,0.2337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| ||
|short_description=p13@GRAMD3 | |||
}} | }} |
Latest revision as of 01:13, 20 September 2015
Short description: | p13@GRAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_GRAMD3_5end |
Coexpression cluster: | C1274_Preadipocyte_Olfactory_Adipocyte_amniotic_serous_spindle_mesodermal |
Association with transcript: | 87bp_to_ENST00000505720, ENST00000513978, ENST00000514099_5end |
EntrezGene: | GRAMD3 |
HGNC: | 24911 |
UniProt: | D6RFH3D6R9P9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle cell | 3.50e-16 | 5 |
preadipocyte of the breast | 2.20e-11 | 3 |
omentum preadipocyte | 4.44e-11 | 3 |
hair follicle dermal papilla cell | 2.40e-10 | 3 |
stem cell of epidermis | 2.40e-10 | 3 |
preadipocyte | 5.90e-10 | 12 |
receptor cell | 1.62e-09 | 6 |
sensory epithelial cell | 1.62e-09 | 6 |
olfactory epithelial cell | 1.62e-09 | 6 |
adipocyte of breast | 6.02e-08 | 2 |
outer root sheath cell | 1.56e-07 | 2 |
amniotic epithelial cell | 2.87e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
hair follicle | 3.50e-16 | 5 |
hair follicle placode | 3.50e-16 | 5 |
omentum | 1.85e-14 | 6 |
peritoneum | 1.85e-14 | 6 |
abdominal cavity | 1.85e-14 | 6 |
visceral peritoneum | 1.85e-14 | 6 |
dermal papilla | 2.40e-10 | 3 |
papillary layer of dermis | 2.40e-10 | 3 |
neural tube | 8.26e-10 | 56 |
neural rod | 8.26e-10 | 56 |
future spinal cord | 8.26e-10 | 56 |
neural keel | 8.26e-10 | 56 |
spinal cord | 1.37e-09 | 3 |
dorsal region element | 1.37e-09 | 3 |
dorsum | 1.37e-09 | 3 |
posterior neural tube | 5.13e-09 | 15 |
chordal neural plate | 5.13e-09 | 15 |
breast | 1.37e-08 | 10 |
brainstem | 2.08e-08 | 6 |
chest | 9.13e-08 | 11 |
ecto-epithelium | 1.03e-07 | 104 |
central nervous system | 1.44e-07 | 81 |
ectoderm-derived structure | 1.49e-07 | 171 |
ectoderm | 1.49e-07 | 171 |
presumptive ectoderm | 1.49e-07 | 171 |
hair root sheath | 1.56e-07 | 2 |
hair outer root sheath | 1.56e-07 | 2 |
bulb of hair follicle | 1.56e-07 | 2 |
dorsal plus ventral thalamus | 2.37e-07 | 2 |
thalamic complex | 2.37e-07 | 2 |
integument | 2.41e-07 | 46 |
integumental system | 2.41e-07 | 46 |
skin of body | 4.65e-07 | 41 |
cavity lining | 5.23e-07 | 12 |
serous membrane | 5.23e-07 | 12 |