FFCP PHASE1:Hg19::chr20:1309809..1309843,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27111 | |EntrezGene=27111 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15756 | |HGNC=15756 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc002wev.3,uc010zpq.1_5end | |association_with_transcript=0bp_to_uc002wev.3,uc010zpq.1_5end | ||
|cluster_id=chr20:1309809..1309843,- | |||
|description=CAGE_peak_2_at_SDCBP2_5end | |description=CAGE_peak_2_at_SDCBP2_5end | ||
|id=chr20:1309809..1309843,- | |id=chr20:1309809..1309843,- | ||
|ontology_enrichment_celltype=CL:0002076!1.19e-23!43;CL:0000066!3.35e-20!254;CL:0000223!1.34e-19!59;CL:0002368!1.24e-12!13;CL:0002251!1.20e-10!21;CL:0002202!2.82e-08!9;CL:0002632!2.82e-08!9 | |ontology_enrichment_celltype=CL:0002076!1.19e-23!43;CL:0000066!3.35e-20!254;CL:0000223!1.34e-19!59;CL:0002368!1.24e-12!13;CL:0002251!1.20e-10!21;CL:0002202!2.82e-08!9;CL:0002632!2.82e-08!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.84e-17;42!CL:0002368;4.40e-15;13!CL:0002251;4.46e-11;20!CL:0002202;3.95e-09;9!CL:0002632;3.95e-09;9!CL:0000244;2.12e-08;4!CL:0000731;2.12e-08;4!CL:0002159;3.87e-08;14 | |ontology_enrichment_celltype_v019=CL:0002076;1.84e-17;42!CL:0002368;4.40e-15;13!CL:0002251;4.46e-11;20!CL:0002202;3.95e-09;9!CL:0002632;3.95e-09;9!CL:0000244;2.12e-08;4!CL:0000731;2.12e-08;4!CL:0002159;3.87e-08;14 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.28e-22,42;CL:0000223,1.47e-16,58;CL:0002368,4.78e-15,13;CL:0000066,6.91e-15,253;CL:0002251,5.15e-11,20;CL:0002202,4.12e-09,9;CL:0002632,4.12e-09,9;CL:0000244,2.05e-08,4;CL:0000731,2.05e-08,4;CL:0002159,2.98e-08,14 | |||
|ontology_enrichment_development_v019=CL:0000223;5.02e-09;58 | |ontology_enrichment_development_v019=CL:0000223;5.02e-09;58 | ||
|ontology_enrichment_disease=DOID:1749!6.28e-09!14;DOID:305!5.39e-07!106 | |ontology_enrichment_disease=DOID:1749!6.28e-09!14;DOID:305!5.39e-07!106 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!2.08e-32!169;UBERON:0000925!2.08e-32!169;UBERON:0006595!2.08e-32!169;UBERON:0001007!5.11e-24!155;UBERON:0001555!5.11e-24!155;UBERON:0007026!5.11e-24!155;UBERON:0004921!1.43e-20!129;UBERON:0004185!1.43e-20!129;UBERON:0000077!1.19e-18!130;UBERON:0005911!7.94e-15!82;UBERON:0001004!1.19e-13!72;UBERON:0000466!8.76e-13!126;UBERON:0001041!1.16e-11!98;UBERON:0000464!3.15e-11!104;UBERON:0000062!4.75e-11!511;UBERON:0000161!1.67e-10!35;UBERON:0005631!8.02e-10!14;UBERON:0000158!8.02e-10!14;UBERON:0005177!1.50e-09!107;UBERON:0000481!4.96e-09!347;UBERON:0005153!6.52e-09!37;UBERON:0000065!8.20e-09!53;UBERON:0005178!8.88e-09!34;UBERON:0002224!8.88e-09!34;UBERON:0000064!2.11e-08!219;UBERON:0005181!2.29e-08!35;UBERON:0001008!3.48e-08!45;UBERON:0000468!4.67e-08!659;UBERON:0000166!5.73e-08!21;UBERON:0000922!9.23e-08!612;UBERON:0009569!1.00e-07!113;UBERON:0005409!1.06e-07!35;UBERON:0000467!1.13e-07!625;UBERON:0000480!1.33e-07!626;UBERON:0006554!1.45e-07!44;UBERON:0003929!1.84e-07!54;UBERON:0007196!2.28e-07!14;UBERON:0001558!2.28e-07!14;UBERON:0007023!3.61e-07!115;UBERON:0003104!4.84e-07!238;UBERON:0009142!4.84e-07!238;UBERON:0005157!4.95e-07!51;UBERON:0002530!5.11e-07!59;UBERON:0003124!5.21e-07!7;UBERON:0002050!8.34e-07!605;UBERON:0005423!8.34e-07!605;UBERON:0000365!8.81e-07!5 | |ontology_enrichment_uberon=UBERON:0004119!2.08e-32!169;UBERON:0000925!2.08e-32!169;UBERON:0006595!2.08e-32!169;UBERON:0001007!5.11e-24!155;UBERON:0001555!5.11e-24!155;UBERON:0007026!5.11e-24!155;UBERON:0004921!1.43e-20!129;UBERON:0004185!1.43e-20!129;UBERON:0000077!1.19e-18!130;UBERON:0005911!7.94e-15!82;UBERON:0001004!1.19e-13!72;UBERON:0000466!8.76e-13!126;UBERON:0001041!1.16e-11!98;UBERON:0000464!3.15e-11!104;UBERON:0000062!4.75e-11!511;UBERON:0000161!1.67e-10!35;UBERON:0005631!8.02e-10!14;UBERON:0000158!8.02e-10!14;UBERON:0005177!1.50e-09!107;UBERON:0000481!4.96e-09!347;UBERON:0005153!6.52e-09!37;UBERON:0000065!8.20e-09!53;UBERON:0005178!8.88e-09!34;UBERON:0002224!8.88e-09!34;UBERON:0000064!2.11e-08!219;UBERON:0005181!2.29e-08!35;UBERON:0001008!3.48e-08!45;UBERON:0000468!4.67e-08!659;UBERON:0000166!5.73e-08!21;UBERON:0000922!9.23e-08!612;UBERON:0009569!1.00e-07!113;UBERON:0005409!1.06e-07!35;UBERON:0000467!1.13e-07!625;UBERON:0000480!1.33e-07!626;UBERON:0006554!1.45e-07!44;UBERON:0003929!1.84e-07!54;UBERON:0007196!2.28e-07!14;UBERON:0001558!2.28e-07!14;UBERON:0007023!3.61e-07!115;UBERON:0003104!4.84e-07!238;UBERON:0009142!4.84e-07!238;UBERON:0005157!4.95e-07!51;UBERON:0002530!5.11e-07!59;UBERON:0003124!5.21e-07!7;UBERON:0002050!8.34e-07!605;UBERON:0005423!8.34e-07!605;UBERON:0000365!8.81e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;7.95e-15;33!UBERON:0005409;3.45e-11;22!UBERON:0001555;8.24e-10;54!UBERON:0000160;8.01e-09;17!UBERON:0001041;1.37e-08;14!UBERON:0007196;6.00e-08;15!UBERON:0001558;6.00e-08;15!UBERON:0001007;7.33e-08;81!UBERON:0000165;6.10e-07;28!UBERON:0002108;6.61e-07;4!UBERON:0000486;7.20e-07;12!UBERON:0000161;9.92e-07;19!UBERON:0000166;9.92e-07;19 | |ontology_enrichment_uberon_v019=UBERON:0004921;7.95e-15;33!UBERON:0005409;3.45e-11;22!UBERON:0001555;8.24e-10;54!UBERON:0000160;8.01e-09;17!UBERON:0001041;1.37e-08;14!UBERON:0007196;6.00e-08;15!UBERON:0001558;6.00e-08;15!UBERON:0001007;7.33e-08;81!UBERON:0000165;6.10e-07;28!UBERON:0002108;6.61e-07;4!UBERON:0000486;7.20e-07;12!UBERON:0000161;9.92e-07;19!UBERON:0000166;9.92e-07;19 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.84e-28,160;UBERON:0000925,1.84e-28,160;UBERON:0006595,1.84e-28,160;UBERON:0001007,1.11e-20,145;UBERON:0001555,1.11e-20,145;UBERON:0007026,1.11e-20,145;UBERON:0004921,3.31e-16,118;UBERON:0001004,2.47e-11,74;UBERON:0005911,7.49e-10,82;UBERON:0005409,1.74e-09,25;UBERON:0001041,1.94e-09,87;UBERON:0000161,3.52e-09,36;UBERON:0000160,7.64e-09,17;UBERON:0000166,3.62e-08,22;UBERON:0007196,5.30e-08,15;UBERON:0001558,5.30e-08,15;UBERON:0002108,6.62e-07,4;UBERON:0000065,7.44e-07,54;UBERON:0005178,7.46e-07,34;UBERON:0002224,7.46e-07,34 | |||
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| ||
|short_description=p2@SDCBP2 | |short_description=p2@SDCBP2 | ||
}} | }} |
Latest revision as of 04:34, 20 September 2015
Short description: | p2@SDCBP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SDCBP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc002wev.3, uc010zpq.1_5end |
EntrezGene: | SDCBP2 |
HGNC: | 15756 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.28e-22 | 42 |
endodermal cell | 1.47e-16 | 58 |
respiratory epithelial cell | 4.78e-15 | 13 |
epithelial cell | 6.91e-15 | 253 |
epithelial cell of alimentary canal | 5.15e-11 | 20 |
epithelial cell of tracheobronchial tree | 4.12e-09 | 9 |
epithelial cell of lower respiratory tract | 4.12e-09 | 9 |
transitional epithelial cell | 2.05e-08 | 4 |
urothelial cell | 2.05e-08 | 4 |
general ecto-epithelial cell | 2.98e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.84e-28 | 160 |
endoderm | 1.84e-28 | 160 |
presumptive endoderm | 1.84e-28 | 160 |
digestive system | 1.11e-20 | 145 |
digestive tract | 1.11e-20 | 145 |
primitive gut | 1.11e-20 | 145 |
subdivision of digestive tract | 3.31e-16 | 118 |
respiratory system | 2.47e-11 | 74 |
endo-epithelium | 7.49e-10 | 82 |
gastrointestinal system | 1.74e-09 | 25 |
foregut | 1.94e-09 | 87 |
orifice | 3.52e-09 | 36 |
intestine | 7.64e-09 | 17 |
oral opening | 3.62e-08 | 22 |
tracheobronchial tree | 5.30e-08 | 15 |
lower respiratory tract | 5.30e-08 | 15 |
small intestine | 6.62e-07 | 4 |
respiratory tract | 7.44e-07 | 54 |
thoracic cavity element | 7.46e-07 | 34 |
thoracic cavity | 7.46e-07 | 34 |