FFCP PHASE1:Hg19::chr17:39661856..39661871,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3860 | |EntrezGene=3860 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6415 | |HGNC=6415 | ||
|TSSclassifier=strong | |||
|UniProt=P13646,A1A4E9 | |UniProt=P13646,A1A4E9 | ||
|association_with_transcript=0bp_to_NM_002274,NM_153490,uc002hwu.1,uc002hwv.1,uc002hww.2,uc002hwx.1,uc010cxo.2,uc010wfr.1_5end | |association_with_transcript=0bp_to_NM_002274,NM_153490,uc002hwu.1,uc002hwv.1,uc002hww.2,uc002hwx.1,uc010cxo.2,uc010wfr.1_5end | ||
|cluster_id=chr17:39661856..39661871,- | |||
|coexpression_cluster_id=C60 | |coexpression_cluster_id=C60 | ||
|description=CAGE_peak_1_at_KRT13_5end | |description=CAGE_peak_1_at_KRT13_5end | ||
|id=chr17:39661856..39661871,- | |id=chr17:39661856..39661871,- | ||
|ontology_enrichment_celltype=CL:0002076!7.68e-22!43;CL:0000223!2.65e-15!59;CL:0002368!8.57e-12!13;CL:0002251!3.52e-10!21;CL:0000066!1.29e-08!254;CL:0002202!6.37e-08!9;CL:0002632!6.37e-08!9 | |ontology_enrichment_celltype=CL:0002076!7.68e-22!43;CL:0000223!2.65e-15!59;CL:0002368!8.57e-12!13;CL:0002251!3.52e-10!21;CL:0000066!1.29e-08!254;CL:0002202!6.37e-08!9;CL:0002632!6.37e-08!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;5.08e-17;42!CL:0002368;3.46e-14;13!CL:0002251;8.10e-14;20!CL:0002202;7.87e-09;9!CL:0002632;7.87e-09;9!CL:0000244;1.24e-07;4!CL:0000731;1.24e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,9.97e-23,42;CL:0000223,5.34e-17,58;CL:0002368,4.15e-14,13;CL:0002251,7.54e-14,20;CL:0002202,9.06e-09,9;CL:0002632,9.06e-09,9;CL:0000244,1.31e-07,4;CL:0000731,1.31e-07,4;CL:0000066,4.12e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000223;3.87e-09;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1749;1.03e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.03e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.29e-21!169;UBERON:0000925!4.29e-21!169;UBERON:0006595!4.29e-21!169;UBERON:0001004!1.27e-15!72;UBERON:0000161!1.32e-14!35;UBERON:0001007!1.79e-14!155;UBERON:0001555!1.79e-14!155;UBERON:0007026!1.79e-14!155;UBERON:0000077!1.34e-13!130;UBERON:0004921!7.50e-12!129;UBERON:0004185!7.50e-12!129;UBERON:0000166!4.49e-11!21;UBERON:0000065!7.04e-10!53;UBERON:0004175!1.73e-09!25;UBERON:0001041!1.53e-08!98;UBERON:0000468!1.68e-08!659;UBERON:0007023!2.73e-08!115;UBERON:0000165!2.82e-08!28;UBERON:0000930!2.82e-08!28;UBERON:0000062!6.27e-08!511;UBERON:0005795!1.37e-07!22;UBERON:0000922!1.42e-07!612;UBERON:0005156!1.51e-07!59;UBERON:0000990!1.51e-07!59;UBERON:0003975!1.56e-07!22;UBERON:0007196!1.57e-07!14;UBERON:0001558!1.57e-07!14;UBERON:0001044!2.80e-07!6;UBERON:0003293!2.80e-07!6;UBERON:0003294!2.80e-07!6;UBERON:0010047!2.80e-07!6;UBERON:0000167!2.80e-07!6;UBERON:0002050!3.76e-07!605;UBERON:0005423!3.76e-07!605;UBERON:0003408!4.03e-07!10;UBERON:0005911!5.27e-07!82;UBERON:0005178!8.23e-07!34;UBERON:0002224!8.23e-07!34;UBERON:0000365!9.13e-07!5;UBERON:0000923!9.27e-07!604;UBERON:0005291!9.27e-07!604;UBERON:0006598!9.27e-07!604;UBERON:0002532!9.27e-07!604 | |ontology_enrichment_uberon=UBERON:0004119!4.29e-21!169;UBERON:0000925!4.29e-21!169;UBERON:0006595!4.29e-21!169;UBERON:0001004!1.27e-15!72;UBERON:0000161!1.32e-14!35;UBERON:0001007!1.79e-14!155;UBERON:0001555!1.79e-14!155;UBERON:0007026!1.79e-14!155;UBERON:0000077!1.34e-13!130;UBERON:0004921!7.50e-12!129;UBERON:0004185!7.50e-12!129;UBERON:0000166!4.49e-11!21;UBERON:0000065!7.04e-10!53;UBERON:0004175!1.73e-09!25;UBERON:0001041!1.53e-08!98;UBERON:0000468!1.68e-08!659;UBERON:0007023!2.73e-08!115;UBERON:0000165!2.82e-08!28;UBERON:0000930!2.82e-08!28;UBERON:0000062!6.27e-08!511;UBERON:0005795!1.37e-07!22;UBERON:0000922!1.42e-07!612;UBERON:0005156!1.51e-07!59;UBERON:0000990!1.51e-07!59;UBERON:0003975!1.56e-07!22;UBERON:0007196!1.57e-07!14;UBERON:0001558!1.57e-07!14;UBERON:0001044!2.80e-07!6;UBERON:0003293!2.80e-07!6;UBERON:0003294!2.80e-07!6;UBERON:0010047!2.80e-07!6;UBERON:0000167!2.80e-07!6;UBERON:0002050!3.76e-07!605;UBERON:0005423!3.76e-07!605;UBERON:0003408!4.03e-07!10;UBERON:0005911!5.27e-07!82;UBERON:0005178!8.23e-07!34;UBERON:0002224!8.23e-07!34;UBERON:0000365!9.13e-07!5;UBERON:0000923!9.27e-07!604;UBERON:0005291!9.27e-07!604;UBERON:0006598!9.27e-07!604;UBERON:0002532!9.27e-07!604 | ||
|ontology_enrichment_uberon_v019=UBERON:0000161;4.19e-11;19!UBERON:0000166;4.19e-11;19!UBERON:0000165;4.65e-11;28!UBERON:0001041;1.64e-10;14!UBERON:0005178;5.65e-09;34!UBERON:0002224;5.65e-09;34!UBERON:0000365;5.91e-09;5!UBERON:0007196;2.42e-08;15!UBERON:0001558;2.42e-08;15!UBERON:0000974;2.42e-08;6!UBERON:0000486;3.89e-08;12!UBERON:0005181;9.49e-08;35!UBERON:0005910;2.25e-07;6!UBERON:0001044;4.08e-07;6!UBERON:0003293;4.08e-07;6!UBERON:0003294;4.08e-07;6!UBERON:0010047;4.08e-07;6!UBERON:0003408;4.08e-07;6!UBERON:0000167;4.08e-07;6!UBERON:0001555;5.19e-07;54!UBERON:0000344;5.73e-07;20!UBERON:0001004;6.20e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.33e-22,160;UBERON:0000925,1.33e-22,160;UBERON:0006595,1.33e-22,160;UBERON:0001004,2.00e-18,74;UBERON:0001007,2.56e-14,145;UBERON:0001555,2.56e-14,145;UBERON:0007026,2.56e-14,145;UBERON:0000161,1.01e-13,36;UBERON:0000166,2.77e-13,22;UBERON:0004921,1.41e-11,118;UBERON:0000065,1.87e-11,54;UBERON:0000165,1.45e-10,29;UBERON:0000930,1.45e-10,29;UBERON:0001041,4.51e-10,87;UBERON:0005178,1.26e-09,34;UBERON:0002224,1.26e-09,34;UBERON:0005181,3.13e-09,35;UBERON:0000153,3.43e-09,62;UBERON:0007811,3.43e-09,62;UBERON:0000365,6.28e-09,5;UBERON:0000974,9.40e-09,10;UBERON:0004175,1.68e-08,25;UBERON:0007196,2.68e-08,15;UBERON:0001558,2.68e-08,15;UBERON:0001444,3.19e-08,49;UBERON:0001008,5.79e-08,48;UBERON:0003408,8.57e-08,10;UBERON:0005910,2.36e-07,6;UBERON:0001044,3.73e-07,6;UBERON:0003293,3.73e-07,6;UBERON:0003294,3.73e-07,6;UBERON:0010047,3.73e-07,6;UBERON:0000167,3.73e-07,6;UBERON:0006554,3.88e-07,47;UBERON:0000344,5.75e-07,20;UBERON:0007023,7.68e-07,114 | |||
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| ||
|short_description=p1@KRT13 | |short_description=p1@KRT13 | ||
}} | }} |
Latest revision as of 05:39, 20 September 2015
Short description: | p1@KRT13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KRT13_5end |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | 0bp_to_NM_002274, NM_153490, uc002hwu.1, uc002hwv.1, uc002hww.2, uc002hwx.1, uc010cxo.2, uc010wfr.1_5end |
EntrezGene: | KRT13 |
HGNC: | 6415 |
UniProt: | P13646A1A4E9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 9.97e-23 | 42 |
endodermal cell | 5.34e-17 | 58 |
respiratory epithelial cell | 4.15e-14 | 13 |
epithelial cell of alimentary canal | 7.54e-14 | 20 |
epithelial cell of tracheobronchial tree | 9.06e-09 | 9 |
epithelial cell of lower respiratory tract | 9.06e-09 | 9 |
transitional epithelial cell | 1.31e-07 | 4 |
urothelial cell | 1.31e-07 | 4 |
epithelial cell | 4.12e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.33e-22 | 160 |
endoderm | 1.33e-22 | 160 |
presumptive endoderm | 1.33e-22 | 160 |
respiratory system | 2.00e-18 | 74 |
digestive system | 2.56e-14 | 145 |
digestive tract | 2.56e-14 | 145 |
primitive gut | 2.56e-14 | 145 |
orifice | 1.01e-13 | 36 |
oral opening | 2.77e-13 | 22 |
subdivision of digestive tract | 1.41e-11 | 118 |
respiratory tract | 1.87e-11 | 54 |
mouth | 1.45e-10 | 29 |
stomodeum | 1.45e-10 | 29 |
foregut | 4.51e-10 | 87 |
thoracic cavity element | 1.26e-09 | 34 |
thoracic cavity | 1.26e-09 | 34 |
thoracic segment organ | 3.13e-09 | 35 |
anterior region of body | 3.43e-09 | 62 |
craniocervical region | 3.43e-09 | 62 |
urothelium | 6.28e-09 | 5 |
neck | 9.40e-09 | 10 |
internal genitalia | 1.68e-08 | 25 |
tracheobronchial tree | 2.68e-08 | 15 |
lower respiratory tract | 2.68e-08 | 15 |
subdivision of head | 3.19e-08 | 49 |
renal system | 5.79e-08 | 48 |
gland of gut | 8.57e-08 | 10 |
transitional epithelium | 2.36e-07 | 6 |
saliva-secreting gland | 3.73e-07 | 6 |
gland of oral region | 3.73e-07 | 6 |
gland of foregut | 3.73e-07 | 6 |
oral gland | 3.73e-07 | 6 |
oral cavity | 3.73e-07 | 6 |
urinary system structure | 3.88e-07 | 47 |
mucosa | 5.75e-07 | 20 |
adult organism | 7.68e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.03e-07 | 14 |