FFCP PHASE1:Hg19::chr9:116225999..116226029,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5998 | |EntrezGene=5998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9999 | |HGNC=9999 | ||
|TSSclassifier=strong | |||
|UniProt=B3KWG8,P49796,Q9NX91 | |UniProt=B3KWG8,P49796,Q9NX91 | ||
|association_with_transcript=0bp_to_ENST00000317613,ENST00000478599,NM_017790,uc004bhr.2,uc004bhs.2_5end | |association_with_transcript=0bp_to_ENST00000317613,ENST00000478599,NM_017790,uc004bhr.2,uc004bhs.2_5end | ||
|cluster_id=chr9:116225999..116226029,+ | |||
|coexpression_cluster_id=C4792 | |||
|description=CAGE_peak_4_at_RGS3_5end | |description=CAGE_peak_4_at_RGS3_5end | ||
|id=chr9:116225999..116226029,+ | |id=chr9:116225999..116226029,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.22e-23!254 | |ontology_enrichment_celltype=CL:0000066!1.22e-23!254 | ||
|ontology_enrichment_celltype_v019=CL:1000507;9.49e-10;10!CL:1000494;9.49e-10;10!CL:1000497;2.90e-09;17!CL:0002518;2.90e-09;17!CL:1000449;8.11e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.24e-26,253;CL:1000507,1.23e-09,10;CL:1000494,1.23e-09,10;CL:1000497,2.86e-09,17;CL:0002518,2.86e-09,17;CL:1000449,7.95e-08,15 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.11e-10;29!UBERON:0001041;2.32e-10;30!UBERON:0006595;4.31e-08;86 | |||
|ontology_enrichment_disease=DOID:305!3.49e-34!106;DOID:0050687!4.54e-30!143;DOID:162!2.82e-14!235;DOID:14566!1.89e-13!239;DOID:299!1.34e-12!25;DOID:0050615!1.33e-07!16;DOID:1324!3.32e-07!15;DOID:3119!5.43e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:299;8.53e-16;25!DOID:305;7.24e-13;106!DOID:3119;5.09e-10;14!DOID:0050687;6.68e-08;143 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.41e-39,106;DOID:0050687,1.81e-34,143;DOID:162,1.91e-19,235;DOID:14566,2.15e-18,239;DOID:299,8.55e-16,25;DOID:3119,6.80e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0001007!7.59e-18!155;UBERON:0001555!7.59e-18!155;UBERON:0007026!7.59e-18!155;UBERON:0000481!2.30e-17!347;UBERON:0004921!7.57e-17!129;UBERON:0004185!7.57e-17!129;UBERON:0004119!1.32e-15!169;UBERON:0000925!1.32e-15!169;UBERON:0006595!1.32e-15!169;UBERON:0000077!6.61e-15!130;UBERON:0000064!1.88e-11!219;UBERON:0000063!3.94e-11!97;UBERON:0001048!7.55e-11!168;UBERON:0005177!8.16e-11!107;UBERON:0000483!9.09e-11!309;UBERON:0000119!1.72e-10!312;UBERON:0000477!1.77e-10!286;UBERON:0001041!4.68e-10!98;UBERON:0005911!1.98e-09!82;UBERON:0000922!2.63e-09!612;UBERON:0000062!2.67e-09!511;UBERON:0000466!4.16e-09!126;UBERON:0003104!1.74e-08!238;UBERON:0009142!1.74e-08!238;UBERON:0000468!1.93e-08!659;UBERON:0005409!2.76e-08!35;UBERON:0000025!3.59e-08!194;UBERON:0002346!4.57e-08!90;UBERON:0000160!6.49e-08!27;UBERON:0002050!1.04e-07!605;UBERON:0005423!1.04e-07!605;UBERON:0004111!1.75e-07!241;UBERON:0005157!1.75e-07!51;UBERON:0000923!1.88e-07!604;UBERON:0005291!1.88e-07!604;UBERON:0006598!1.88e-07!604;UBERON:0002532!1.88e-07!604;UBERON:0009569!2.05e-07!113;UBERON:0003075!2.70e-07!86;UBERON:0007284!2.70e-07!86;UBERON:0000475!3.49e-07!365;UBERON:0008947!4.26e-07!38;UBERON:0003258!4.26e-07!38;UBERON:0003064!7.63e-07!37;UBERON:0000464!7.70e-07!104 | |ontology_enrichment_uberon=UBERON:0001007!7.59e-18!155;UBERON:0001555!7.59e-18!155;UBERON:0007026!7.59e-18!155;UBERON:0000481!2.30e-17!347;UBERON:0004921!7.57e-17!129;UBERON:0004185!7.57e-17!129;UBERON:0004119!1.32e-15!169;UBERON:0000925!1.32e-15!169;UBERON:0006595!1.32e-15!169;UBERON:0000077!6.61e-15!130;UBERON:0000064!1.88e-11!219;UBERON:0000063!3.94e-11!97;UBERON:0001048!7.55e-11!168;UBERON:0005177!8.16e-11!107;UBERON:0000483!9.09e-11!309;UBERON:0000119!1.72e-10!312;UBERON:0000477!1.77e-10!286;UBERON:0001041!4.68e-10!98;UBERON:0005911!1.98e-09!82;UBERON:0000922!2.63e-09!612;UBERON:0000062!2.67e-09!511;UBERON:0000466!4.16e-09!126;UBERON:0003104!1.74e-08!238;UBERON:0009142!1.74e-08!238;UBERON:0000468!1.93e-08!659;UBERON:0005409!2.76e-08!35;UBERON:0000025!3.59e-08!194;UBERON:0002346!4.57e-08!90;UBERON:0000160!6.49e-08!27;UBERON:0002050!1.04e-07!605;UBERON:0005423!1.04e-07!605;UBERON:0004111!1.75e-07!241;UBERON:0005157!1.75e-07!51;UBERON:0000923!1.88e-07!604;UBERON:0005291!1.88e-07!604;UBERON:0006598!1.88e-07!604;UBERON:0002532!1.88e-07!604;UBERON:0009569!2.05e-07!113;UBERON:0003075!2.70e-07!86;UBERON:0007284!2.70e-07!86;UBERON:0000475!3.49e-07!365;UBERON:0008947!4.26e-07!38;UBERON:0003258!4.26e-07!38;UBERON:0003064!7.63e-07!37;UBERON:0000464!7.70e-07!104 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;2.56e-10;22!UBERON:0004211;9.49e-10;10!UBERON:0009773;9.49e-10;10!UBERON:0001231;9.49e-10;10!UBERON:0004810;9.49e-10;10!UBERON:0000160;4.21e-08;17!UBERON:0006555;8.11e-08;15!UBERON:0004819;8.11e-08;15!UBERON:0001285;8.11e-08;15!UBERON:0007684;8.11e-08;15!UBERON:0004921;1.13e-07;33!UBERON:0002113;1.50e-07;24!UBERON:0011143;1.50e-07;24!UBERON:0000489;2.72e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,4.36e-16,118;UBERON:0001007,6.80e-15,145;UBERON:0001555,6.80e-15,145;UBERON:0007026,6.80e-15,145;UBERON:0004119,2.78e-12,160;UBERON:0000925,2.78e-12,160;UBERON:0006595,2.78e-12,160;UBERON:0005177,4.00e-11,101;UBERON:0004810,1.23e-09,10;UBERON:0005911,2.67e-09,82;UBERON:0001041,3.00e-09,87;UBERON:0005409,1.78e-08,25;UBERON:0009569,2.23e-08,112;UBERON:0011216,2.26e-08,223;UBERON:0006555,3.25e-08,16;UBERON:0004819,3.25e-08,16;UBERON:0000160,4.29e-08,17;UBERON:0005172,4.41e-08,54;UBERON:0005173,4.41e-08,54;UBERON:0004211,7.95e-08,15;UBERON:0009773,7.95e-08,15;UBERON:0001231,7.95e-08,15;UBERON:0001285,7.95e-08,15;UBERON:0007684,7.95e-08,15;UBERON:0004208,7.95e-08,15;UBERON:0002113,1.99e-07,26;UBERON:0003918,1.99e-07,26;UBERON:0011143,1.99e-07,26;UBERON:0005095,1.99e-07,26;UBERON:0007687,1.99e-07,26;UBERON:0000489,3.41e-07,31;UBERON:0001048,3.56e-07,160;UBERON:0003929,7.73e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,2.79120467188971,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0.984968464614303,1.63200552995402,0.313454721478088,5.15224776835902,4.79060487755095,4.3939923858181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0.552700035571697,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,2.89151321907653,0.50133791063589,0.434539556882471,0,0,2.6469748805939,0.665188192387692,1.49319135678314,3.20898734969396,0,0.741568885568859,0,0,0,0,0,0,0.993812036833525,0.860234595106124,0.347140501607594,0,0.419499436209906,0,0.835979866147242,0,0,0,0,0,0.24406205754817,0,0.81014194788176,3.48268940307911,4.71511682514957,4.61707069981621,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0,0,1.06400514659507,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0.468642863667593,0,0,0,0.117434498643765,0,0,0.204154171254893,2.21101771161182,0.103325781175765,0,0.494533858557114,0,0,0.505008341862199,1.12606667884768,0,1.31693286264251,0.612975591598039,0.901428353439581,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0.484938170456436,0,0.10075209822764,0,0,0,0,2.80539524098069,2.25300606146525,1.16193942869518,1.96956004529204,1.26160425437814,1.09493207722749,0,0,0,0,0,1.30137480043828,3.20310911148393,3.13314338848527,2.42646740011267,2.39667388501647,1.89816495288877,1.61797569792197,1.56977172100277,1.92373578473195,0.738155454624648,1.40241773803446,0,0,0,0.982827216677626,1.77236972004421,0,5.411491295897,1.54411029268673,0,0,0,0,0.325808305310325,2.07986957055916,1.44331342025273,2.31860809950154,0.117408694235822,0.144366447761074,0,0.190254152234598,19.7551099489819,15.4527509177077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0,0,0,0,0,0.257207374262142,1.41849132023278,0,0,0,0,0,0,0,0,0,0.399891964728228,0,0,0,0,0,1.42636905040718,0.289562613335158,0,0,0,0,0,0,0,0,0,1.67516265334349,1.27587750330633,0,0,0,0,0.500170521059677,0,0,0.713715955188647,0,0.117141414992713,0,0,0,0,0.368738337083406,0.260650843404249,0.195801157462741,0.343143423810856,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0.232420756919918,4.47179963489002,0,0,2.52591785962135,1.82091168006717,0,9.02399225814824,1.69433741629712,10.980896768476,17.5367069583913,3.16654886678627,0,0.170093705276516,1.72732732881711,0,4.33514300070165,1.00337954770971,8.41091701048626,10.8039881160734,6.04461837749881,0,0,5.12900250232778,2.95213181129735,0.325378394664303,0.206082023295445,0,0,0,0,0,0,0,0.15350367472613,0.551346289938122,0.107420244868274,0,0.170453254832202,0.0890320356467374,0,0,0.255225424989168,0,0,0,0.6970372701606,0,0,0,0,0,0,0.316379424718726,0,0.255897791311334,0,0,0,0,0.274537029736055,0.235624804691373,0.202182481573316,0,0,1.95053495635836,0,0,0.545999645631943,0.282810863907425,1.13008116620243,0.551365343546124,0,0,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0.354761064070598,0.211107635297664,0,1.51789269506286,1.39973888097993,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.86112604746889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,17.9654918791891,0,0,0,14.4909434871271,0,5.3453642549875,0,0,0,0,0,4.01138275443188,23.9097585901284,1.38141957765574,9.82537716631677,0.613612095012929,0,0,5.93131117572357,1.07412704805365,0,5.22810049875748,0,0,0,0.185536196323703,0,7.29197731038653,6.90933999969946,2.17499872630438,1.593108275997,10.1701460117107,9.92828263425333,25.5110096198684,21.5787413903608,12.3273746402638,0,0.361789315876224,0,0,0.591095237907095,0.87754158861589,0.544692317594951,4.0432885840795,0.230850775511391,0,0,0.179515288819544,3.58536327342627,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,5.06395354867265,7.99840759979824,15.4074847862995,1.08194319871046,7.96209544862804,3.80367527364358,13.4426631885398,0,0,0,0.606610196826093,0,0.468528891450678,0,2.15231080825299,8.01175252462506,0,7.25944296291983,1.83643656978294,0.505492637027904,0,0,5.31723098165748,0.330991955875499,0.313932918407225,0,2.56148591426813,0,1.56203764501618,1.86185555087318,0,1.39781334593624,2.75177651954586,8.70806981601766,5.40860946437773,10.8392403310236,6.013319022282,0,0.451961481561065,0,0,0.253243183823515,10.1686719022098,0.160317640503067,5.76323085796252,3.59657297247834,3.31407959454444,0,12.0116498503375,0,1.73953549791606,1.88555227693436,1.22313785466253,0.732219924186332,0,0,0,0,0,5.15718529703949,0,7.54062483435086,5.72901060029209,0.717873024576814,6.19004901546872,11.1598772515508,7.14148663813992,8.86821836824787,0,3.49487848582361,8.11466777764404,9.88990300573997,8.56025006948148,3.05125192695721,0,0,0,1.60753148465019,1.2378549293751,1.24632101408756,0,0.77380195455795,0.242998226632099,0.335434687599266,7.17131936422703,4.24882163893485,0,0.896436696664224,0.959575986597226,28.5878130549347,5.29673576292345,0,0,0,0.326587360109409,2.39460383124975,0,0,0,0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| ||
|short_description=p4@RGS3 | |short_description=p4@RGS3 | ||
}} | }} |
Latest revision as of 07:03, 20 September 2015
Short description: | p4@RGS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RGS3_5end |
Coexpression cluster: | C4792_small_left_aorta_carcinoid_MCF7_adenocarcinoma_Renal |
Association with transcript: | 0bp_to_ENST00000317613, ENST00000478599, NM_017790, uc004bhr.2, uc004bhs.2_5end |
EntrezGene: | RGS3 |
HGNC: | 9999 |
UniProt: | B3KWG8P49796Q9NX91 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.24e-26 | 253 |
kidney tubule cell | 1.23e-09 | 10 |
nephron tubule epithelial cell | 1.23e-09 | 10 |
kidney cell | 2.86e-09 | 17 |
kidney epithelial cell | 2.86e-09 | 17 |
epithelial cell of nephron | 7.95e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 4.36e-16 | 118 |
digestive system | 6.80e-15 | 145 |
digestive tract | 6.80e-15 | 145 |
primitive gut | 6.80e-15 | 145 |
endoderm-derived structure | 2.78e-12 | 160 |
endoderm | 2.78e-12 | 160 |
presumptive endoderm | 2.78e-12 | 160 |
trunk region element | 4.00e-11 | 101 |
nephron tubule epithelium | 1.23e-09 | 10 |
endo-epithelium | 2.67e-09 | 82 |
foregut | 3.00e-09 | 87 |
gastrointestinal system | 1.78e-08 | 25 |
subdivision of trunk | 2.23e-08 | 112 |
organ system subdivision | 2.26e-08 | 223 |
excretory tube | 3.25e-08 | 16 |
kidney epithelium | 3.25e-08 | 16 |
intestine | 4.29e-08 | 17 |
abdomen element | 4.41e-08 | 54 |
abdominal segment element | 4.41e-08 | 54 |
nephron epithelium | 7.95e-08 | 15 |
renal tubule | 7.95e-08 | 15 |
nephron tubule | 7.95e-08 | 15 |
nephron | 7.95e-08 | 15 |
uriniferous tubule | 7.95e-08 | 15 |
nephrogenic mesenchyme | 7.95e-08 | 15 |
kidney | 1.99e-07 | 26 |
kidney mesenchyme | 1.99e-07 | 26 |
upper urinary tract | 1.99e-07 | 26 |
kidney rudiment | 1.99e-07 | 26 |
kidney field | 1.99e-07 | 26 |
cavitated compound organ | 3.41e-07 | 31 |
primordium | 3.56e-07 | 160 |
gut epithelium | 7.73e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.41e-39 | 106 |
cell type cancer | 1.81e-34 | 143 |
cancer | 1.91e-19 | 235 |
disease of cellular proliferation | 2.15e-18 | 239 |
adenocarcinoma | 8.55e-16 | 25 |
gastrointestinal system cancer | 6.80e-10 | 14 |