FFCP PHASE1:Hg19::chr14:54420100..54420120,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:54420100..54420120,-
|short_description=p2@BMP4
|description=CAGE_peak_2_at_BMP4_5end
|association_with_transcript=26bp_to_ENST00000559501_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=652 | |EntrezGene=652 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1071 | |HGNC=1071 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=26bp_to_ENST00000559501_5end | |||
|cluster_id=chr14:54420100..54420120,- | |||
|description=CAGE_peak_2_at_BMP4_5end | |||
|id=chr14:54420100..54420120,- | |||
|ontology_enrichment_celltype=CL:0000222!7.17e-18!119;CL:0000213!2.91e-17!57;CL:0000215!2.91e-17!57;CL:0002139!5.82e-16!24;CL:0000115!2.67e-15!35;CL:0002078!1.61e-14!44;CL:0000071!1.15e-11!18;CL:0002546!1.15e-11!18;CL:0002321!4.08e-10!248;CL:0000220!7.97e-10!246;CL:0000055!2.36e-09!180;CL:1000413!4.64e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.81e-20;24!CL:0000115;1.70e-16;36!CL:0000071;7.81e-15;18!CL:0002078;1.04e-12;45!CL:0000213;7.93e-11;58!CL:0000215;7.93e-11;58!CL:1000413;9.37e-09;9!CL:0002138;2.97e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.14e-20,24;CL:0000222,9.17e-20,121;CL:0000115,2.29e-19,36;CL:0000213,6.99e-19,58;CL:0000215,6.99e-19,58;CL:0002078,3.94e-18,45;CL:0000071,8.96e-15,18;CL:0002546,8.96e-15,18;CL:0002321,5.10e-11,250;CL:1000413,9.29e-09,9;CL:0005020,3.06e-07,6;CL:0002138,3.06e-07,6;CL:0005022,3.06e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;7.81e-15;18!CL:0005022;2.97e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!2.13e-20!286;UBERON:0003914!2.52e-18!118;UBERON:0002049!2.29e-17!79;UBERON:0007798!2.29e-17!79;UBERON:0000119!4.86e-17!312;UBERON:0004111!6.73e-17!241;UBERON:0000483!1.19e-16!309;UBERON:0000490!2.93e-16!138;UBERON:0004872!7.06e-14!84;UBERON:0000481!9.27e-14!347;UBERON:0000055!1.58e-13!69;UBERON:0001009!3.41e-13!113;UBERON:0004535!5.65e-13!110;UBERON:0006914!7.18e-13!25;UBERON:0000025!1.48e-12!194;UBERON:0001986!1.15e-11!18;UBERON:0004638!1.15e-11!18;UBERON:0004852!1.15e-11!18;UBERON:0000487!2.65e-11!22;UBERON:0000468!2.54e-10!659;UBERON:0001981!2.60e-10!60;UBERON:0007500!2.60e-10!60;UBERON:0004537!2.60e-10!60;UBERON:0006965!2.60e-10!60;UBERON:0005256!6.40e-10!143;UBERON:0002100!1.29e-09!216;UBERON:0003104!2.21e-08!238;UBERON:0009142!2.21e-08!238;UBERON:0000475!4.13e-08!365;UBERON:0000922!5.34e-08!612;UBERON:0000467!1.10e-07!625;UBERON:0000480!1.59e-07!626;UBERON:0003915!4.64e-07!9;UBERON:0004700!4.64e-07!9;UBERON:0001917!4.64e-07!9;UBERON:0002050!9.19e-07!605;UBERON:0005423!9.19e-07!605;UBERON:0000923!9.96e-07!604;UBERON:0005291!9.96e-07!604;UBERON:0006598!9.96e-07!604;UBERON:0002532!9.96e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0006914;7.51e-17;25!UBERON:0004638;7.81e-15;18!UBERON:0001986;7.81e-15;18!UBERON:0004852;7.81e-15;18!UBERON:0000487;8.38e-15;22!UBERON:0000490;2.83e-12;33!UBERON:0002049;3.23e-10;75!UBERON:0007798;3.23e-10;75!UBERON:0000055;1.47e-09;65!UBERON:0003915;9.37e-09;9!UBERON:0004700;9.37e-09;9!UBERON:0001917;9.37e-09;9!UBERON:0007500;3.04e-08;56!UBERON:0001981;3.04e-08;56!UBERON:0004537;3.04e-08;56!UBERON:0001473;1.50e-07;8!UBERON:0004536;1.50e-07;8!UBERON:0006558;1.50e-07;8!UBERON:0001009;4.79e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,1.29e-21,78;UBERON:0007798,1.29e-21,78;UBERON:0003914,1.80e-18,117;UBERON:0004535,1.80e-17,109;UBERON:0000055,2.09e-17,68;UBERON:0000490,2.65e-17,148;UBERON:0001009,6.13e-17,112;UBERON:0006914,1.06e-16,25;UBERON:0004872,2.64e-15,83;UBERON:0004638,8.96e-15,18;UBERON:0001986,8.96e-15,18;UBERON:0004852,8.96e-15,18;UBERON:0000487,1.20e-14,22;UBERON:0007500,5.76e-13,59;UBERON:0001981,5.76e-13,59;UBERON:0004537,5.76e-13,59;UBERON:0006965,5.76e-13,59;UBERON:0000483,1.03e-11,306;UBERON:0000119,1.33e-11,309;UBERON:0004111,7.75e-11,240;UBERON:0003104,1.32e-10,160;UBERON:0009142,1.32e-10,160;UBERON:0005256,7.90e-10,122;UBERON:0003915,9.29e-09,9;UBERON:0004700,9.29e-09,9;UBERON:0001917,9.29e-09,9;UBERON:0002100,1.13e-08,199;UBERON:0001473,1.24e-07,8;UBERON:0004536,1.24e-07,8;UBERON:0006558,1.24e-07,8;UBERON:0000025,3.14e-07,192;UBERON:0003929,4.97e-07,54 | |||
|phase1_expression=1.99846217197612,0.214100523890983,3.24195129420734,0,2.23480547213644,6.97870819280295,0,0,1.04474251279935,1.22866968250754,0.697801167972428,0,0,0.618831764800233,0.662794751455832,0,1.20538905604795,0,0,3.32426856807327,6.5280221198161,6.89600387251793,0.286235987131057,0.410623275218653,1.75759695432724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,3.06870148424473,9.75885711438329,12.0321098552613,21.2924382872411,3.1811437882044,2.43317435151318,1.41802225746102,5.76496433402666,6.76327849837071,0.458426764241994,0,0,0,0,0,0,0,0,8.74554592413502,10.3228151412735,20.1341490932405,13.0020826642522,14.6824802673467,37.1409356619091,10.8677382599141,22.7406748069009,35.2208600059843,54.5594598806412,11.6820501961653,2.28081631715554,40.5143015529961,4.77962004449629,44.5578071334968,20.0031391356339,7.18493992403743,8.22063807528252,7.66583187329416,4.74632829784064,4.39684185432977,0,0,0,0.993943903390637,4.55869841992487,1.05927344650575,1.72101972449288,1.41867352879343,8.97084160227691,2.1349799145941,15.7867230986982,2.8008993185979,2.42479209725439,1.63461903113459,5.90293967815232,5.18558332031999,0.70296429550139,0,1.1409436430889,0.747243402759005,0.117434498643765,0,0.140450806702248,0,0.859840221182376,1.65321249881225,10.6920257155385,10.1379441004208,1.82032272387605,2.15585442544872,0.841680569770331,1.37630371859161,0.277064115484183,2.19488810440419,6.74273150757843,4.5071417671979,4.19699077692078,0,0,0,0,0,0.772921620136887,0.558350568994769,0,0,0,0,9.21382523867228,0.710019185033229,0,0.169560592310488,0,0,0,1.09776335516636,1.72288698817931,4.4153698290417,1.86589899027667,3.02785021050754,0.72995471815166,0,3.85944562915731,0,0.464367928031979,0.721879481669586,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0,0,0,4.42893272774789,5.60967095213783,9.8777762719536,10.2906097969879,0,0.982827216677626,0,0,1.47586126251736,3.25978839567199,0.109750285408626,0,0,0.0925884451585296,0.977424915930974,0,1.44331342025273,0.579652024875384,9.04046945615827,45.6197974924993,27.7791307545966,46.6122672974766,2.37061319387782,0.858486162094873,0,0,0,0,0,0.425325291727159,0.0895585227028483,0,1.15014803749563,0,0,0,0,0.25248486685276,0.253991577168676,0.381988425558278,1.17217447210047,1.71072446022705,0.205654985406647,0,0,1.56983518083505,0.87192013766656,0.5867062865676,5.68795549334222,0,0,0.797814349754612,2.08014873822732,0.514414748524284,0,0.532844358032199,18.0152272009266,5.42621605391443,1.64648067356154,0,15.2818537959295,0,5.42590878707255,1.74306691720059,6.79816340037988,0,0,0,0.958499421966331,2.29723871668228,1.42636905040718,1.59259437334337,2.26023954805422,1.25342674267927,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,2.57652132610194,0.500170521059677,0,1.24782516918484,0.178428988797162,1.41932173530541,1.7571212248907,1.20378439891088,2.27407504055985,3.10419213877515,1.32845119707087,0.553107505625109,3.47534457872331,1.37060810223918,0.686286847621712,0,0,0,0.909382714338778,3.32870879020994,1.20956117331872,1.48864684691266,0.920771839728375,0.280660094433074,1.66580894032411,1.53512174720011,1.28683136914886,1.48418066444991,0.308419387605311,0.532685175939381,0.164254312027618,0,0.232420756919918,0.846016147141356,0.601519410909855,0,22.9628896329213,10.5612877443896,42.4843104468534,0.451199612907412,0.231046011313244,0.784349769176855,4.38417673959782,0.422206515571503,26.1586783363062,2.89159298970077,14.2504504627412,98.7054417217852,4.87703587578935,6.02027728625824,0,0,0.223874754722178,0,0,12.8225062558195,24.9291130731776,14.9674061545579,1.44257416306811,20.3284211896722,33.251328467997,0,0,3.21367859688319,0.193341436584244,0,0,0,0.537101224341368,0.145016693914229,0.255679882248303,1.15741646340759,0,0.192190067365106,0,0,0,0,0,5.5446044431696,0.532306030317022,0,0.9266210955196,0.715624433709956,1.48863347743867,4.74569137078089,1.14378116354295,2.55897791311334,6.84702380854273,0.318203247925937,0,10.7923474549989,6.03981465419321,3.53437207037059,3.841467149893,3.17020642346017,1.68503382495592,2.43816869544795,0.974853958525138,0,15.0149902548784,14.5647594912324,4.52032466480971,0,7.96126770289464,5.26141062304515,0,2.62357900818653,4.26111791621678,1.54911749049875,1.69017361519345,2.43799298746888,7.17217999395784,5.7067368237,0,6.75544432952525,5.59801318031833,0.75894634753143,1.39973888097993,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,27.0264899952507,14.4371978289504,0,0,0,0,0,0,0,0.423347165447766,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,1.75809815126273,0,0,4.2620422020962,0,0.593929361665277,0,0.994147647766298,0.140669416410513,20.8147278392834,0,1.05562704063997,1.19548792950642,0.276283915531148,0,0.20453736500431,0,0,8.53749335899605,0.179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| ||
|short_description=p2@BMP4 | |||
}} | }} |
Latest revision as of 07:33, 20 September 2015
Short description: | p2@BMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_BMP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 26bp_to_ENST00000559501_5end |
EntrezGene: | BMP4 |
HGNC: | 1071 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.14e-20 | 24 |
mesodermal cell | 9.17e-20 | 121 |
endothelial cell | 2.29e-19 | 36 |
lining cell | 6.99e-19 | 58 |
barrier cell | 6.99e-19 | 58 |
meso-epithelial cell | 3.94e-18 | 45 |
blood vessel endothelial cell | 8.96e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.96e-15 | 18 |
embryonic cell | 5.10e-11 | 250 |
endothelial cell of artery | 9.29e-09 | 9 |
lymphangioblast | 3.06e-07 | 6 |
endothelial cell of lymphatic vessel | 3.06e-07 | 6 |
vascular lymphangioblast | 3.06e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
vasculature | 1.29e-21 | 78 |
vascular system | 1.29e-21 | 78 |
epithelial tube | 1.80e-18 | 117 |
cardiovascular system | 1.80e-17 | 109 |
vessel | 2.09e-17 | 68 |
unilaminar epithelium | 2.65e-17 | 148 |
circulatory system | 6.13e-17 | 112 |
squamous epithelium | 1.06e-16 | 25 |
splanchnic layer of lateral plate mesoderm | 2.64e-15 | 83 |
blood vessel endothelium | 8.96e-15 | 18 |
endothelium | 8.96e-15 | 18 |
cardiovascular system endothelium | 8.96e-15 | 18 |
simple squamous epithelium | 1.20e-14 | 22 |
epithelial tube open at both ends | 5.76e-13 | 59 |
blood vessel | 5.76e-13 | 59 |
blood vasculature | 5.76e-13 | 59 |
vascular cord | 5.76e-13 | 59 |
epithelium | 1.03e-11 | 306 |
cell layer | 1.33e-11 | 309 |
anatomical conduit | 7.75e-11 | 240 |
mesenchyme | 1.32e-10 | 160 |
entire embryonic mesenchyme | 1.32e-10 | 160 |
trunk mesenchyme | 7.90e-10 | 122 |
endothelial tube | 9.29e-09 | 9 |
arterial system endothelium | 9.29e-09 | 9 |
endothelium of artery | 9.29e-09 | 9 |
trunk | 1.13e-08 | 199 |
lymphatic vessel | 1.24e-07 | 8 |
lymph vasculature | 1.24e-07 | 8 |
lymphatic part of lymphoid system | 1.24e-07 | 8 |
tube | 3.14e-07 | 192 |
gut epithelium | 4.97e-07 | 54 |