FFCP PHASE1:Hg19::chr5:134734908..134734931,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9555 | |EntrezGene=9555 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4740 | |HGNC=4740 | ||
|TSSclassifier=strong | |||
|UniProt=B4DJC3,D6RCF2,O75367 | |UniProt=B4DJC3,D6RCF2,O75367 | ||
|association_with_transcript=0bp_to_ENST00000360597,ENST00000423969,ENST00000506671,NM_001040158,NM_138609,NM_138610,uc003lam.1,uc003lan.1,uc003lao.1,uc003lap.1,uc003laq.1,uc003lar.1,uc011cxz.1_5end | |association_with_transcript=0bp_to_ENST00000360597,ENST00000423969,ENST00000506671,NM_001040158,NM_138609,NM_138610,uc003lam.1,uc003lan.1,uc003lao.1,uc003lap.1,uc003laq.1,uc003lar.1,uc011cxz.1_5end | ||
|cluster_id=chr5:134734908..134734931,- | |||
|description=CAGE_peak_1_at_H2AFY_5end | |description=CAGE_peak_1_at_H2AFY_5end | ||
|id=chr5:134734908..134734931,- | |id=chr5:134734908..134734931,- | ||
|ontology_enrichment_celltype=CL:0000763!4.76e-44!112;CL:0000049!4.76e-44!112;CL:0002009!1.76e-31!65;CL:0002194!3.52e-30!63;CL:0000576!3.52e-30!63;CL:0000040!3.52e-30!63;CL:0000559!3.52e-30!63;CL:0000766!2.42e-29!76;CL:0000012!1.55e-28!682;CL:0000557!1.39e-26!71;CL:0000548!1.90e-26!679;CL:0000004!1.90e-26!679;CL:0000255!1.90e-26!679;CL:0000063!1.23e-24!578;CL:0000839!1.00e-23!70;CL:0002057!2.24e-23!42;CL:0000860!1.37e-22!45;CL:0000003!3.94e-22!722;CL:0000037!2.16e-21!172;CL:0000566!2.16e-21!172;CL:0000988!7.52e-21!182;CL:0000144!9.33e-20!625;CL:0002032!3.12e-19!165;CL:0000837!3.12e-19!165;CL:0002371!1.79e-17!591;CL:0000738!2.06e-11!140;CL:0000066!3.35e-09!254;CL:0002087!1.43e-08!119;CL:0000134!1.99e-07!358;CL:0000219!2.69e-07!390;CL:0002320!4.44e-07!365;CL:0002031!7.85e-07!124 | |ontology_enrichment_celltype=CL:0000763!4.76e-44!112;CL:0000049!4.76e-44!112;CL:0002009!1.76e-31!65;CL:0002194!3.52e-30!63;CL:0000576!3.52e-30!63;CL:0000040!3.52e-30!63;CL:0000559!3.52e-30!63;CL:0000766!2.42e-29!76;CL:0000012!1.55e-28!682;CL:0000557!1.39e-26!71;CL:0000548!1.90e-26!679;CL:0000004!1.90e-26!679;CL:0000255!1.90e-26!679;CL:0000063!1.23e-24!578;CL:0000839!1.00e-23!70;CL:0002057!2.24e-23!42;CL:0000860!1.37e-22!45;CL:0000003!3.94e-22!722;CL:0000037!2.16e-21!172;CL:0000566!2.16e-21!172;CL:0000988!7.52e-21!182;CL:0000144!9.33e-20!625;CL:0002032!3.12e-19!165;CL:0000837!3.12e-19!165;CL:0002371!1.79e-17!591;CL:0000738!2.06e-11!140;CL:0000066!3.35e-09!254;CL:0002087!1.43e-08!119;CL:0000134!1.99e-07!358;CL:0000219!2.69e-07!390;CL:0002320!4.44e-07!365;CL:0002031!7.85e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000473;2.01e-17;39!CL:0000234;2.01e-17;39!CL:0000576;3.82e-17;48!CL:0000860;7.45e-17;33!CL:0002057;7.45e-17;33!CL:0000763;7.55e-14;100!CL:0000766;4.01e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.79e-45,108;CL:0000049,1.79e-45,108;CL:0002009,2.38e-33,61;CL:0002194,4.94e-32,59;CL:0000576,4.94e-32,59;CL:0000040,4.94e-32,59;CL:0000559,4.94e-32,59;CL:0000766,8.33e-31,72;CL:0000557,5.24e-28,67;CL:0000473,2.67e-27,48;CL:0000234,2.67e-27,48;CL:0000839,5.16e-25,66;CL:0000860,2.24e-23,42;CL:0002057,2.24e-23,42;CL:0000037,8.37e-22,168;CL:0000988,5.56e-21,177;CL:0002032,1.27e-19,161;CL:0000837,1.27e-19,161;CL:0000738,1.09e-11,136;CL:0000066,2.45e-09,253;CL:0002087,8.19e-09,115;CL:0000134,3.64e-07,354;CL:0000219,4.94e-07,386;CL:0002031,5.17e-07,120;CL:0002320,7.99e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;6.07e-17;42!CL:0000049;6.70e-14;108 | |||
|ontology_enrichment_disease=DOID:8692!6.12e-14!31;DOID:1240!2.18e-13!39;DOID:2531!1.14e-10!51;DOID:0060083!1.14e-10!51;DOID:0050686!3.38e-08!137;DOID:162!3.00e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.75e-13;31!DOID:1240;2.51e-10;39!DOID:2531;2.88e-07;51!DOID:0060083;2.88e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,6.12e-14,31;DOID:1240,2.18e-13,39;DOID:2531,1.14e-10,51;DOID:0060083,1.14e-10,51;DOID:0050686,3.38e-08,137;DOID:162,3.00e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0002371!5.63e-26!80;UBERON:0001474!6.41e-23!86;UBERON:0002390!8.71e-23!102;UBERON:0003061!8.71e-23!102;UBERON:0002193!1.30e-19!112;UBERON:0004765!4.81e-19!101;UBERON:0001434!4.81e-19!101;UBERON:0002405!5.78e-18!115;UBERON:0003081!3.32e-14!216;UBERON:0002204!2.37e-09!167;UBERON:0000926!5.87e-07!448;UBERON:0004120!5.87e-07!448;UBERON:0006603!5.87e-07!448;UBERON:0002384!7.43e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.39e-27,76;UBERON:0001474,6.56e-24,82;UBERON:0002390,1.34e-23,98;UBERON:0003061,1.34e-23,98;UBERON:0004765,7.18e-22,90;UBERON:0002405,2.59e-21,93;UBERON:0002193,3.07e-20,108;UBERON:0001434,6.69e-18,100;UBERON:0003081,5.07e-13,203;UBERON:0002204,1.60e-08,167 | |||
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| ||
|short_description=p1@H2AFY | |short_description=p1@H2AFY | ||
}} | }} |
Latest revision as of 18:06, 24 September 2015
Short description: | p1@H2AFY |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_H2AFY_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000360597, ENST00000423969, ENST00000506671, NM_001040158, NM_138609, NM_138610, uc003lam.1, uc003lan.1, uc003lao.1, uc003lap.1, uc003laq.1, uc003lar.1, uc011cxz.1_5end |
EntrezGene: | H2AFY |
HGNC: | 4740 |
UniProt: | B4DJC3D6RCF2O75367 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.79e-45 | 108 |
common myeloid progenitor | 1.79e-45 | 108 |
macrophage dendritic cell progenitor | 2.38e-33 | 61 |
monopoietic cell | 4.94e-32 | 59 |
monocyte | 4.94e-32 | 59 |
monoblast | 4.94e-32 | 59 |
promonocyte | 4.94e-32 | 59 |
myeloid leukocyte | 8.33e-31 | 72 |
granulocyte monocyte progenitor cell | 5.24e-28 | 67 |
defensive cell | 2.67e-27 | 48 |
phagocyte | 2.67e-27 | 48 |
myeloid lineage restricted progenitor cell | 5.16e-25 | 66 |
classical monocyte | 2.24e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.24e-23 | 42 |
hematopoietic stem cell | 8.37e-22 | 168 |
hematopoietic cell | 5.56e-21 | 177 |
hematopoietic oligopotent progenitor cell | 1.27e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.27e-19 | 161 |
leukocyte | 1.09e-11 | 136 |
epithelial cell | 2.45e-09 | 253 |
nongranular leukocyte | 8.19e-09 | 115 |
mesenchymal cell | 3.64e-07 | 354 |
motile cell | 4.94e-07 | 386 |
hematopoietic lineage restricted progenitor cell | 5.17e-07 | 120 |
connective tissue cell | 7.99e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.39e-27 | 76 |
bone element | 6.56e-24 | 82 |
hematopoietic system | 1.34e-23 | 98 |
blood island | 1.34e-23 | 98 |
skeletal element | 7.18e-22 | 90 |
immune system | 2.59e-21 | 93 |
hemolymphoid system | 3.07e-20 | 108 |
skeletal system | 6.69e-18 | 100 |
lateral plate mesoderm | 5.07e-13 | 203 |
musculoskeletal system | 1.60e-08 | 167 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 6.12e-14 | 31 |
leukemia | 2.18e-13 | 39 |
hematologic cancer | 1.14e-10 | 51 |
immune system cancer | 1.14e-10 | 51 |
organ system cancer | 3.38e-08 | 137 |
cancer | 3.00e-07 | 235 |