FFCP PHASE1:Hg19::chr5:134734908..134734931,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9555 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4740 | |||
|TSSclassifier=strong | |||
|UniProt=B4DJC3,D6RCF2,O75367 | |||
|association_with_transcript=0bp_to_ENST00000360597,ENST00000423969,ENST00000506671,NM_001040158,NM_138609,NM_138610,uc003lam.1,uc003lan.1,uc003lao.1,uc003lap.1,uc003laq.1,uc003lar.1,uc011cxz.1_5end | |||
|cluster_id=chr5:134734908..134734931,- | |||
|description=CAGE_peak_1_at_H2AFY_5end | |||
|id=chr5:134734908..134734931,- | |||
|ontology_enrichment_celltype=CL:0000763!4.76e-44!112;CL:0000049!4.76e-44!112;CL:0002009!1.76e-31!65;CL:0002194!3.52e-30!63;CL:0000576!3.52e-30!63;CL:0000040!3.52e-30!63;CL:0000559!3.52e-30!63;CL:0000766!2.42e-29!76;CL:0000012!1.55e-28!682;CL:0000557!1.39e-26!71;CL:0000548!1.90e-26!679;CL:0000004!1.90e-26!679;CL:0000255!1.90e-26!679;CL:0000063!1.23e-24!578;CL:0000839!1.00e-23!70;CL:0002057!2.24e-23!42;CL:0000860!1.37e-22!45;CL:0000003!3.94e-22!722;CL:0000037!2.16e-21!172;CL:0000566!2.16e-21!172;CL:0000988!7.52e-21!182;CL:0000144!9.33e-20!625;CL:0002032!3.12e-19!165;CL:0000837!3.12e-19!165;CL:0002371!1.79e-17!591;CL:0000738!2.06e-11!140;CL:0000066!3.35e-09!254;CL:0002087!1.43e-08!119;CL:0000134!1.99e-07!358;CL:0000219!2.69e-07!390;CL:0002320!4.44e-07!365;CL:0002031!7.85e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.01e-17;39!CL:0000234;2.01e-17;39!CL:0000576;3.82e-17;48!CL:0000860;7.45e-17;33!CL:0002057;7.45e-17;33!CL:0000763;7.55e-14;100!CL:0000766;4.01e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.79e-45,108;CL:0000049,1.79e-45,108;CL:0002009,2.38e-33,61;CL:0002194,4.94e-32,59;CL:0000576,4.94e-32,59;CL:0000040,4.94e-32,59;CL:0000559,4.94e-32,59;CL:0000766,8.33e-31,72;CL:0000557,5.24e-28,67;CL:0000473,2.67e-27,48;CL:0000234,2.67e-27,48;CL:0000839,5.16e-25,66;CL:0000860,2.24e-23,42;CL:0002057,2.24e-23,42;CL:0000037,8.37e-22,168;CL:0000988,5.56e-21,177;CL:0002032,1.27e-19,161;CL:0000837,1.27e-19,161;CL:0000738,1.09e-11,136;CL:0000066,2.45e-09,253;CL:0002087,8.19e-09,115;CL:0000134,3.64e-07,354;CL:0000219,4.94e-07,386;CL:0002031,5.17e-07,120;CL:0002320,7.99e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;6.07e-17;42!CL:0000049;6.70e-14;108 | |||
|ontology_enrichment_disease=DOID:8692!6.12e-14!31;DOID:1240!2.18e-13!39;DOID:2531!1.14e-10!51;DOID:0060083!1.14e-10!51;DOID:0050686!3.38e-08!137;DOID:162!3.00e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.75e-13;31!DOID:1240;2.51e-10;39!DOID:2531;2.88e-07;51!DOID:0060083;2.88e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,6.12e-14,31;DOID:1240,2.18e-13,39;DOID:2531,1.14e-10,51;DOID:0060083,1.14e-10,51;DOID:0050686,3.38e-08,137;DOID:162,3.00e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0002371!5.63e-26!80;UBERON:0001474!6.41e-23!86;UBERON:0002390!8.71e-23!102;UBERON:0003061!8.71e-23!102;UBERON:0002193!1.30e-19!112;UBERON:0004765!4.81e-19!101;UBERON:0001434!4.81e-19!101;UBERON:0002405!5.78e-18!115;UBERON:0003081!3.32e-14!216;UBERON:0002204!2.37e-09!167;UBERON:0000926!5.87e-07!448;UBERON:0004120!5.87e-07!448;UBERON:0006603!5.87e-07!448;UBERON:0002384!7.43e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.39e-27,76;UBERON:0001474,6.56e-24,82;UBERON:0002390,1.34e-23,98;UBERON:0003061,1.34e-23,98;UBERON:0004765,7.18e-22,90;UBERON:0002405,2.59e-21,93;UBERON:0002193,3.07e-20,108;UBERON:0001434,6.69e-18,100;UBERON:0003081,5.07e-13,203;UBERON:0002204,1.60e-08,167 | |||
|phase1_expression=32.1570731308885,42.8201047781966,34.392874599417,41.0300523247835,49.1657203870017,54.0849884942229,60.7919707603945,80.2284239252075,59.2891376013633,129.010316663292,204.455742215921,113.371072135559,105.77055826961,53.8383635376203,70.919038405774,46.3904351051725,46.4074786578462,41.6276751520803,51.7208766717937,106.992199468729,91.1883089861811,56.7353045875339,58.3921413747356,85.4096412454797,78.5896923863466,49.7451271419163,58.948223225061,51.4768509791462,206.909609622524,143.552194888358,235.320507440436,163.656977957249,193.374199855637,150.859636148049,44.698574734834,44.3568005360755,339.402107871083,314.669392046106,272.339359664452,251.732610030388,547.921165465095,500.739607665342,543.484447708134,170.697532327209,219.923799226887,208.86487668271,184.316226266208,199.416425690585,205.025617532559,162.546201662015,171.115351961439,184.692621542985,193.74707257398,225.919639254339,190.951346098022,173.559437058282,179.572246738063,164.722314098247,210.585717951181,200.580641922558,214.817274268478,153.051003286636,181.312464778063,180.719294225862,195.601026835666,226.386704651765,217.987787148451,183.411525637423,213.807996552283,181.787063018183,159.220069192576,189.294704897608,171.522613992959,188.650970676564,186.879179669273,197.079126777873,180.175124358978,198.233498550788,192.870704036496,201.218997081322,163.90734201205,176.636236690401,21.1195493353587,27.8530691743687,24.016749854316,24.3236226862909,25.6253431703048,33.9103939573145,33.0522436392431,25.7594513724548,23.3377317334874,27.6001479004341,24.4654866000146,203.5438460117,313.88479526966,236.518908128019,34.8176293101485,33.405914833679,44.6155252828935,66.8745981562712,33.5699934632598,41.1899590989218,27.2757419771076,50.0232951414429,44.7800979361753,47.6297873354785,46.0366568400527,44.3195966250836,43.0496440423197,50.6468746179322,46.9795030235942,62.5974665187713,30.9918917008706,33.7101443393039,43.9049199980903,60.3938796578028,44.8367977514248,46.389705140155,44.278446103413,45.8734196626699,39.0650072313851,39.9189858668317,56.315094535087,47.3550461271348,36.2299107001803,42.8566826199671,41.0563998460523,40.1197419017218,36.6393068223405,32.5854908736298,46.3233045996527,71.0942911285854,41.2996074754603,35.4210369336875,70.1873074890245,37.3704018918925,113.725890428307,55.9630100848031,70.8065780558868,66.0753604438441,71.761019911284,39.6866598758069,204.005361443824,179.088885864879,164.22098118927,134.254027457735,160.081384464714,114.475499666564,113.254992334465,126.295550452052,79.7037253540487,66.2380638231716,80.1894558713543,66.7063371470331,64.1834137401156,65.7532120236761,82.5530117820402,44.1892658179552,40.557353946285,46.1914445615245,74.120594348083,95.0340132148141,47.3480391643449,61.7673974981059,51.8490846644326,45.3642619683125,62.6436949627014,57.2066320855277,59.7934886116945,85.4339093611316,79.6927586097272,390.070035610747,473.091922260957,201.039358037708,41.2486719907114,43.68752652428,43.1653929451093,50.1964086310424,58.1656146805306,64.4779240163653,73.6568070534964,51.8001851676036,37.6565352833717,49.3041059775058,49.528956643378,78.4031475200745,61.6508239193599,70.296429550139,45.5753712172268,120.369554345879,34.0742991658106,59.5392908123888,50.1806127541208,57.8657323613264,51.0385428137233,53.4329280306191,39.9870773150212,43.956105719436,34.617370098998,111.039686156439,66.1128690470939,62.1160260490504,63.9355636545737,52.3651178265106,40.8249187419179,42.2953158202647,46.7240363199516,50.3638893230493,56.6871248776804,47.1961829289034,43.8699035400293,56.4171260638676,46.9919533327281,64.4101350114073,49.6932006405345,47.5949256920371,46.6723254722141,50.739188623067,32.4936142207317,35.4004864433198,48.9913237672928,50.980561703186,53.4115865778036,112.671077394202,109.098448236334,108.125332461654,20.7355300420312,23.5902987612244,32.5343040034652,60.5380561289763,25.2320850875628,22.9935736217773,71.9667848717153,46.3133475498877,117.414683149608,40.8643776668142,56.3065995702277,77.7275676261774,83.4494215886603,91.5841913557232,73.4557858397744,89.3305720778865,93.0100826915499,84.2695676001028,83.1979012131467,96.571536393544,87.8404991003331,112.193419042757,79.8453581982916,79.3847041481927,35.4914097501126,29.4848165003288,42.5368732810611,68.4267804092708,62.9700805340741,55.4164027264238,77.0447003568551,179.842805212191,116.412550052669,99.0696363196267,77.8681849691676,90.4743263193233,57.7325368101093,56.9218288427627,61.0525210026273,42.1550027462336,38.4277975438587,31.0114268142395,82.1812573877646,77.2637545885385,297.430143353576,223.006064677694,269.319666067176,89.9844806273059,78.1116896124697,92.5791384992784,97.2605556552932,142.991897748869,241.914470553248,51.7296399790741,42.6154420624014,21.3547959006995,26.3739514753039,19.6938196145153,46.1629691504069,66.083997621582,56.2643746608226,53.0324582670386,59.9484282460376,47.454203139339,35.4424776461917,108.430758561964,97.6550554186547,53.7569635067564,51.06232772432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| |||
|short_description=p1@H2AFY | |||
}} |
Latest revision as of 18:06, 24 September 2015
Short description: | p1@H2AFY |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_H2AFY_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000360597, ENST00000423969, ENST00000506671, NM_001040158, NM_138609, NM_138610, uc003lam.1, uc003lan.1, uc003lao.1, uc003lap.1, uc003laq.1, uc003lar.1, uc011cxz.1_5end |
EntrezGene: | H2AFY |
HGNC: | 4740 |
UniProt: | B4DJC3D6RCF2O75367 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.79e-45 | 108 |
common myeloid progenitor | 1.79e-45 | 108 |
macrophage dendritic cell progenitor | 2.38e-33 | 61 |
monopoietic cell | 4.94e-32 | 59 |
monocyte | 4.94e-32 | 59 |
monoblast | 4.94e-32 | 59 |
promonocyte | 4.94e-32 | 59 |
myeloid leukocyte | 8.33e-31 | 72 |
granulocyte monocyte progenitor cell | 5.24e-28 | 67 |
defensive cell | 2.67e-27 | 48 |
phagocyte | 2.67e-27 | 48 |
myeloid lineage restricted progenitor cell | 5.16e-25 | 66 |
classical monocyte | 2.24e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.24e-23 | 42 |
hematopoietic stem cell | 8.37e-22 | 168 |
hematopoietic cell | 5.56e-21 | 177 |
hematopoietic oligopotent progenitor cell | 1.27e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.27e-19 | 161 |
leukocyte | 1.09e-11 | 136 |
epithelial cell | 2.45e-09 | 253 |
nongranular leukocyte | 8.19e-09 | 115 |
mesenchymal cell | 3.64e-07 | 354 |
motile cell | 4.94e-07 | 386 |
hematopoietic lineage restricted progenitor cell | 5.17e-07 | 120 |
connective tissue cell | 7.99e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.39e-27 | 76 |
bone element | 6.56e-24 | 82 |
hematopoietic system | 1.34e-23 | 98 |
blood island | 1.34e-23 | 98 |
skeletal element | 7.18e-22 | 90 |
immune system | 2.59e-21 | 93 |
hemolymphoid system | 3.07e-20 | 108 |
skeletal system | 6.69e-18 | 100 |
lateral plate mesoderm | 5.07e-13 | 203 |
musculoskeletal system | 1.60e-08 | 167 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 6.12e-14 | 31 |
leukemia | 2.18e-13 | 39 |
hematologic cancer | 1.14e-10 | 51 |
immune system cancer | 1.14e-10 | 51 |
organ system cancer | 3.38e-08 | 137 |
cancer | 3.00e-07 | 235 |