FFCP PHASE1:Hg19::chr17:41738709..41738733,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4222 | |EntrezGene=4222 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7013 | |HGNC=7013 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=168bp_to_AB527749,CU686836,EU446636_5end | |association_with_transcript=168bp_to_AB527749,CU686836,EU446636_5end | ||
|cluster_id=chr17:41738709..41738733,- | |||
|coexpression_cluster_id=C3636 | |||
|description=CAGE_peak_3_at_MEOX1_5end | |description=CAGE_peak_3_at_MEOX1_5end | ||
|id=chr17:41738709..41738733,- | |id=chr17:41738709..41738733,- | ||
|ontology_enrichment_celltype=CL:0000791!4.31e-19!18;CL:0000789!4.31e-19!18;CL:0002420!4.31e-19!18;CL:0002419!4.31e-19!18;CL:0000790!4.31e-19!18;CL:0000084!2.42e-14!25;CL:0000827!2.42e-14!25;CL:0000838!5.30e-12!52;CL:0000542!1.20e-11!53;CL:0000051!1.20e-11!53;CL:0000624!1.67e-11!6;CL:0000625!4.24e-11!11 | |ontology_enrichment_celltype=CL:0000791!4.31e-19!18;CL:0000789!4.31e-19!18;CL:0002420!4.31e-19!18;CL:0002419!4.31e-19!18;CL:0000790!4.31e-19!18;CL:0000084!2.42e-14!25;CL:0000827!2.42e-14!25;CL:0000838!5.30e-12!52;CL:0000542!1.20e-11!53;CL:0000051!1.20e-11!53;CL:0000624!1.67e-11!6;CL:0000625!4.24e-11!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;6.44e-24;18!CL:0000789;6.44e-24;18!CL:0002419;6.44e-24;18!CL:0000624;1.74e-23;6!CL:0000084;1.46e-16;25!CL:0000898;4.72e-13;3!CL:0000815;2.97e-09;2!CL:0000792;2.97e-09;2!CL:0002677;2.97e-09;2!CL:0000625;2.00e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.43e-24,18;CL:0000789,3.43e-24,18;CL:0002420,3.43e-24,18;CL:0002419,3.43e-24,18;CL:0000790,3.43e-24,18;CL:0000624,1.12e-23,6;CL:0000084,9.39e-17,25;CL:0000827,9.39e-17,25;CL:0000898,5.79e-13,3;CL:0000815,3.57e-09,2;CL:0000792,3.57e-09,2;CL:0002677,3.57e-09,2;CL:0000625,1.53e-08,11;CL:0000838,3.33e-08,52;CL:0000542,5.29e-08,53;CL:0000051,5.29e-08,53 | |||
|ontology_enrichment_development_v019=CL:0000790;6.44e-24;18!UBERON:0005062;1.95e-09;4!UBERON:0007284;1.95e-09;4!UBERON:0004872;3.35e-09;7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.74e-19!115;UBERON:0000178!5.89e-11!15;UBERON:0000179!5.89e-11!15;UBERON:0000463!5.89e-11!15 | |ontology_enrichment_uberon=UBERON:0007023!1.74e-19!115;UBERON:0000178!5.89e-11!15;UBERON:0000179!5.89e-11!15;UBERON:0000463!5.89e-11!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0003978;1.95e-12;3!UBERON:0000946;1.95e-12;3!UBERON:0002133;8.48e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003978,1.13e-12,3;UBERON:0009751,1.13e-12,3;UBERON:0000946,1.13e-12,3;UBERON:0002523,1.13e-12,3;UBERON:0005983,1.13e-12,3;UBERON:0002165,1.13e-12,3;UBERON:0002062,1.13e-12,3;UBERON:0007280,1.13e-12,3;UBERON:0007023,4.07e-12,114;UBERON:0002133,5.75e-09,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.840547463227464,0.246301768349837,0.314843125254717,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7703879310245,1.57204305099666,4.11202997999018,1.00311897234407,2.28145586643513,0,0,0.557052284425868,5.89211814949674,7.3106185212595,7.58250818542044,3.20228299314188,3.25148368899696,0.164437904603676,0.276350017785848,0.289803085735052,0.296573126324121,0.535081656179426,1.04535523804977,0.679856056185397,3.44898444241729,2.74901956386104,2.53019692019503,0.637130828648193,1.30216690771284,1.90090408889675,1.6563263098555,0.76791966692651,2.49861453104692,2.60454977248419,0,0.403213486449465,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33888245105868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0.74000264525148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,1.07813787429759,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.431428401637234,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,1.01489521846434,0.764637207142375,0.569647187174163,0.476463550915578,0.411362273086194,2.59389324477087,1.62009431171434,1.58625035258854,0.640944426764839,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80921266106924,0,0.891547074219827,0,0,0,0,0,0,0,0,0,0.796991953004279,1.38141957765574,0,0,0,0,0,0,0,0.591860433821602,0,0,0,0,0,0,0,5.07499702804355,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46205491157214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,0,0,0,0,0.802577647298789,0,0,0,0,0.789168805698781,3.62972148145992,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,1.26085721434945,0,1.12990370390266,0,0,0,0,0,1.70762395791482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67569440763353,2.7499250881402,3.58936512288407,0.399358000997982,0,1.56220020209311,1.5452198671947,0,0,0,0,0,0,0.76205998859206,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0.714695326373367,2.64836788146173,0.5085370753095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314408610199332,0,0,3.75462100606094,0,0,0,2.7575888342497,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17739639275771,0,0,0,0,0,0,0,0.23248285073625,0,0,0,0,0,0.430227358820278,0,0.170426809518315,0.846774100381858,0,0,0,0,0,0,0,1.95059333026869,1.1598144313382,0.485710993059139,0,0,0,0,0,0,0.385870790539723,0.437119121007915,0,0.245148321753905,0,0,0,0.4226557275834,0,2.44358186747619,2.57831551894309,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0,0,0,0,0.757786982182394,0.267964130156178,0,0,0.426467963801962,1.1903221573187,0.322944549180031,0.993195428733726,0,0.12729431655633,0.202117188958219,0.870866991587845,0.684466602170562,0.80822463617505,1.14755528628282,0.665320713092027,0,0,0,0,0,1.4668973301944,0,4.66029741929859,3.42165449104745,0.641136984606466 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.840547463227464,0.246301768349837,0.314843125254717,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7703879310245,1.57204305099666,4.11202997999018,1.00311897234407,2.28145586643513,0,0,0.557052284425868,5.89211814949674,7.3106185212595,7.58250818542044,3.20228299314188,3.25148368899696,0.164437904603676,0.276350017785848,0.289803085735052,0.296573126324121,0.535081656179426,1.04535523804977,0.679856056185397,3.44898444241729,2.74901956386104,2.53019692019503,0.637130828648193,1.30216690771284,1.90090408889675,1.6563263098555,0.76791966692651,2.49861453104692,2.60454977248419,0,0.403213486449465,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33888245105868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0.74000264525148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,1.07813787429759,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.431428401637234,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,1.01489521846434,0.764637207142375,0.569647187174163,0.476463550915578,0.411362273086194,2.59389324477087,1.62009431171434,1.58625035258854,0.640944426764839,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80921266106924,0,0.891547074219827,0,0,0,0,0,0,0,0,0,0.796991953004279,1.38141957765574,0,0,0,0,0,0,0,0.591860433821602,0,0,0,0,0,0,0,5.07499702804355,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46205491157214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,0,0,0,0,0.802577647298789,0,0,0,0,0.789168805698781,3.62972148145992,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,1.26085721434945,0,1.12990370390266,0,0,0,0,0,1.70762395791482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67569440763353,2.7499250881402,3.58936512288407,0.399358000997982,0,1.56220020209311,1.5452198671947,0,0,0,0,0,0,0.76205998859206,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0.714695326373367,2.64836788146173,0.5085370753095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314408610199332,0,0,3.75462100606094,0,0,0,2.7575888342497,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17739639275771,0,0,0,0,0,0,0,0.23248285073625,0,0,0,0,0,0.430227358820278,0,0.170426809518315,0.846774100381858,0,0,0,0,0,0,0,1.95059333026869,1.1598144313382,0.485710993059139,0,0,0,0,0,0,0.385870790539723,0.437119121007915,0,0.245148321753905,0,0,0,0.4226557275834,0,2.44358186747619,2.57831551894309,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0,0,0,0,0.757786982182394,0.267964130156178,0,0,0.426467963801962,1.1903221573187,0.322944549180031,0.993195428733726,0,0.12729431655633,0.202117188958219,0.870866991587845,0.684466602170562,0.80822463617505,1.14755528628282,0.665320713092027,0,0,0,0,0,1.4668973301944,0,4.66029741929859,3.42165449104745,0.641136984606466 | ||
|short_description=p3@MEOX1 | |short_description=p3@MEOX1 | ||
}} | }} |
Latest revision as of 18:37, 24 September 2015
Short description: | p3@MEOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MEOX1_5end |
Coexpression cluster: | C3636_CD4_heart_vagina_vein_lymphangiectasia_adipose_breast |
Association with transcript: | 168bp_to_AB527749, CU686836, EU446636_5end |
EntrezGene: | MEOX1 |
HGNC: | 7013 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.43e-24 | 18 |
alpha-beta T cell | 3.43e-24 | 18 |
immature T cell | 3.43e-24 | 18 |
mature T cell | 3.43e-24 | 18 |
immature alpha-beta T cell | 3.43e-24 | 18 |
CD4-positive, alpha-beta T cell | 1.12e-23 | 6 |
T cell | 9.39e-17 | 25 |
pro-T cell | 9.39e-17 | 25 |
naive T cell | 5.79e-13 | 3 |
regulatory T cell | 3.57e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.57e-09 | 2 |
naive regulatory T cell | 3.57e-09 | 2 |
CD8-positive, alpha-beta T cell | 1.53e-08 | 11 |
lymphoid lineage restricted progenitor cell | 3.33e-08 | 52 |
lymphocyte | 5.29e-08 | 53 |
common lymphoid progenitor | 5.29e-08 | 53 |
Ontology term | p-value | n |
---|---|---|
valve | 1.13e-12 | 3 |
cardiac mesenchyme | 1.13e-12 | 3 |
cardial valve | 1.13e-12 | 3 |
tunica intima | 1.13e-12 | 3 |
heart layer | 1.13e-12 | 3 |
endocardium | 1.13e-12 | 3 |
endocardial cushion | 1.13e-12 | 3 |
presumptive endocardium | 1.13e-12 | 3 |
adult organism | 4.07e-12 | 114 |
atrioventricular valve | 5.75e-09 | 2 |