FFCP PHASE1:Hg19::chr20:2276639..2276656,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7053 | |EntrezGene=7053 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11779 | |HGNC=11779 | ||
|TSSclassifier=strong | |||
|UniProt=Q08188,E7ERY7 | |UniProt=Q08188,E7ERY7 | ||
|association_with_transcript=0bp_to_ENST00000381458,ENST00000420960_5end | |association_with_transcript=0bp_to_ENST00000381458,ENST00000420960_5end | ||
|cluster_id=chr20:2276639..2276656,+ | |||
|coexpression_cluster_id=C60 | |coexpression_cluster_id=C60 | ||
|description=CAGE_peak_1_at_TGM3_5end | |description=CAGE_peak_1_at_TGM3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002328!3.85e-08!3;CL:0002623!1.19e-07!3;CL:0002076!5.17e-07!43 | |ontology_enrichment_celltype=CL:0002328!3.85e-08!3;CL:0002623!1.19e-07!3;CL:0002076!5.17e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0002328;1.03e-18;3!CL:0002202;1.59e-16;9!CL:0002632;1.59e-16;9!CL:0001014;2.34e-13;2!CL:0001016;2.34e-13;2!CL:0002368;2.18e-11;13!CL:0002623;5.97e-09;3!CL:0000307;6.74e-09;3 | |ontology_enrichment_celltype_v019=CL:0002328;1.03e-18;3!CL:0002202;1.59e-16;9!CL:0002632;1.59e-16;9!CL:0001014;2.34e-13;2!CL:0001016;2.34e-13;2!CL:0002368;2.18e-11;13!CL:0002623;5.97e-09;3!CL:0000307;6.74e-09;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002328,1.00e-18,3;CL:0002202,1.84e-16,9;CL:0002632,1.84e-16,9;CL:0001014,2.64e-13,2;CL:0001016,2.64e-13,2;CL:0002368,2.41e-11,13;CL:0002623,5.51e-09,3;CL:0000068,8.23e-09,3;CL:0000069,8.23e-09,3;CL:0000307,8.23e-09,3;CL:0000377,8.23e-09,3 | |||
|ontology_enrichment_development_v019=CL:0000377;6.74e-09;3!UBERON:0009143;7.50e-08;1 | |ontology_enrichment_development_v019=CL:0000377;6.74e-09;3!UBERON:0009143;7.50e-08;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3151;1.83e-07;1!DOID:3149;1.83e-07;1 | |ontology_enrichment_disease_v019=DOID:3151;1.83e-07;1!DOID:3149;1.83e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3151,1.72e-07,1;DOID:3149,1.72e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004815!3.85e-08!3;UBERON:0002031!3.85e-08!3;UBERON:0003408!1.18e-07!10;UBERON:0007196!1.44e-07!14;UBERON:0001558!1.44e-07!14 | |ontology_enrichment_uberon=UBERON:0004815!3.85e-08!3;UBERON:0002031!3.85e-08!3;UBERON:0003408!1.18e-07!10;UBERON:0007196!1.44e-07!14;UBERON:0001558!1.44e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.03e-18;3!UBERON:0002031;1.03e-18;3!UBERON:0007196;4.79e-14;15!UBERON:0001558;4.79e-14;15!UBERON:0002185;1.89e-11;5!UBERON:0001044;1.08e-09;6!UBERON:0003293;1.08e-09;6!UBERON:0003294;1.08e-09;6!UBERON:0010047;1.08e-09;6!UBERON:0003408;1.08e-09;6!UBERON:0000167;1.08e-09;6!UBERON:0001723;1.39e-09;3!UBERON:0001033;1.39e-09;3!UBERON:0003126;2.16e-08;7!UBERON:0001005;2.16e-08;7!UBERON:0000485;2.58e-08;7!UBERON:0002372;7.03e-08;1!UBERON:0001961;7.03e-08;1!UBERON:0001744;7.03e-08;1!UBERON:0001042;7.03e-08;1!UBERON:0001735;7.03e-08;1!UBERON:0005178;1.51e-07;34!UBERON:0002224;1.51e-07;34!UBERON:0000165;1.57e-07;28!UBERON:0007029;2.28e-07;1!UBERON:0001041;3.14e-07;14!UBERON:0000014;5.30e-07;4!UBERON:0005181;6.84e-07;35 | |ontology_enrichment_uberon_v019=UBERON:0004815;1.03e-18;3!UBERON:0002031;1.03e-18;3!UBERON:0007196;4.79e-14;15!UBERON:0001558;4.79e-14;15!UBERON:0002185;1.89e-11;5!UBERON:0001044;1.08e-09;6!UBERON:0003293;1.08e-09;6!UBERON:0003294;1.08e-09;6!UBERON:0010047;1.08e-09;6!UBERON:0003408;1.08e-09;6!UBERON:0000167;1.08e-09;6!UBERON:0001723;1.39e-09;3!UBERON:0001033;1.39e-09;3!UBERON:0003126;2.16e-08;7!UBERON:0001005;2.16e-08;7!UBERON:0000485;2.58e-08;7!UBERON:0002372;7.03e-08;1!UBERON:0001961;7.03e-08;1!UBERON:0001744;7.03e-08;1!UBERON:0001042;7.03e-08;1!UBERON:0001735;7.03e-08;1!UBERON:0005178;1.51e-07;34!UBERON:0002224;1.51e-07;34!UBERON:0000165;1.57e-07;28!UBERON:0007029;2.28e-07;1!UBERON:0001041;3.14e-07;14!UBERON:0000014;5.30e-07;4!UBERON:0005181;6.84e-07;35 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.00e-18,3;UBERON:0002031,1.00e-18,3;UBERON:0007196,5.26e-14,15;UBERON:0001558,5.26e-14,15;UBERON:0002185,1.86e-11,5;UBERON:0000166,9.39e-10,22;UBERON:0001044,1.01e-09,6;UBERON:0003293,1.01e-09,6;UBERON:0003294,1.01e-09,6;UBERON:0010047,1.01e-09,6;UBERON:0000167,1.01e-09,6;UBERON:0001004,1.23e-09,74;UBERON:0001723,1.41e-09,3;UBERON:0001033,1.41e-09,3;UBERON:0010056,1.41e-09,3;UBERON:0001041,2.15e-09,87;UBERON:0000072,3.61e-09,47;UBERON:0003126,2.42e-08,7;UBERON:0001005,2.42e-08,7;UBERON:0005178,5.99e-08,34;UBERON:0002224,5.99e-08,34;UBERON:0002372,7.03e-08,1;UBERON:0001961,7.03e-08,1;UBERON:0001744,7.03e-08,1;UBERON:0001735,7.03e-08,1;UBERON:0000065,8.60e-08,54;UBERON:0005181,1.07e-07,35;UBERON:0007029,2.21e-07,1;UBERON:0004921,2.68e-07,118;UBERON:0000165,2.94e-07,29;UBERON:0000930,2.94e-07,29;UBERON:0000014,5.07e-07,4 | |||
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| ||
|short_description=p1@TGM3 | |short_description=p1@TGM3 | ||
}} | }} |
Latest revision as of 19:07, 24 September 2015
Short description: | p1@TGM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TGM3_5end |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | 0bp_to_ENST00000381458, ENST00000420960_5end |
EntrezGene: | TGM3 |
HGNC: | 11779 |
UniProt: | Q08188E7ERY7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 1.00e-18 | 3 |
epithelial cell of tracheobronchial tree | 1.84e-16 | 9 |
epithelial cell of lower respiratory tract | 1.84e-16 | 9 |
CD1a-positive Langerhans cell | 2.64e-13 | 2 |
immature CD1a-positive Langerhans cell | 2.64e-13 | 2 |
respiratory epithelial cell | 2.41e-11 | 13 |
acinar cell of salivary gland | 5.51e-09 | 3 |
duct epithelial cell | 8.23e-09 | 3 |
branched duct epithelial cell | 8.23e-09 | 3 |
tracheal epithelial cell | 8.23e-09 | 3 |
tracheoblast | 8.23e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.00e-18 | 3 |
epithelium of bronchus | 1.00e-18 | 3 |
tracheobronchial tree | 5.26e-14 | 15 |
lower respiratory tract | 5.26e-14 | 15 |
bronchus | 1.86e-11 | 5 |
oral opening | 9.39e-10 | 22 |
saliva-secreting gland | 1.01e-09 | 6 |
gland of oral region | 1.01e-09 | 6 |
gland of foregut | 1.01e-09 | 6 |
oral gland | 1.01e-09 | 6 |
oral cavity | 1.01e-09 | 6 |
respiratory system | 1.23e-09 | 74 |
tongue | 1.41e-09 | 3 |
gustatory system | 1.41e-09 | 3 |
future tongue | 1.41e-09 | 3 |
foregut | 2.15e-09 | 87 |
segment of respiratory tract | 3.61e-09 | 47 |
trachea | 2.42e-08 | 7 |
respiratory airway | 2.42e-08 | 7 |
thoracic cavity element | 5.99e-08 | 34 |
thoracic cavity | 5.99e-08 | 34 |
tonsil | 7.03e-08 | 1 |
mucosa-associated lymphoid tissue | 7.03e-08 | 1 |
lymphoid tissue | 7.03e-08 | 1 |
tonsillar ring | 7.03e-08 | 1 |
respiratory tract | 8.60e-08 | 54 |
thoracic segment organ | 1.07e-07 | 35 |
surface | 2.21e-07 | 1 |
subdivision of digestive tract | 2.68e-07 | 118 |
mouth | 2.94e-07 | 29 |
stomodeum | 2.94e-07 | 29 |
zone of skin | 5.07e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.72e-07 | 1 |
keratoacanthoma | 1.72e-07 | 1 |