FFCP PHASE1:Hg19::chr8:103250828..103250841,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50484 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17296 | |||
|TSSclassifier=strong | |||
|UniProt=B4E2N4 | |||
|association_with_transcript=161bp_to_ENST00000535248,uc003yko.2_5end | |||
|cluster_id=chr8:103250828..103250841,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_13_at_RRM2B_5end | |||
|id=chr8:103250828..103250841,- | |||
|ontology_enrichment_celltype=CL:0000134!1.58e-20!358;CL:0002320!4.81e-20!365;CL:0000037!3.20e-19!172;CL:0000566!3.20e-19!172;CL:0000988!3.78e-19!182;CL:0002032!1.49e-16!165;CL:0000837!1.49e-16!165;CL:0000219!4.30e-16!390;CL:0000738!1.37e-15!140;CL:0000763!6.24e-15!112;CL:0000049!6.24e-15!112;CL:0000034!4.40e-14!444;CL:0000723!2.26e-13!436;CL:0000048!2.58e-13!430;CL:0000766!4.75e-12!76;CL:0002031!1.84e-10!124;CL:0002087!3.20e-10!119;CL:0000557!2.95e-09!71;CL:0000094!8.71e-09!8;CL:0002009!1.53e-08!65;CL:0000081!2.27e-08!11;CL:0000839!1.15e-07!70;CL:0002194!1.77e-07!63;CL:0000576!1.77e-07!63;CL:0000040!1.77e-07!63;CL:0000559!1.77e-07!63;CL:0000144!2.20e-07!625;CL:0000063!8.82e-07!578;CL:0002371!8.98e-07!591;CL:0002057!9.17e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000094;1.53e-33;8!CL:0000081;3.77e-24;11!CL:0000775;9.51e-18;3!CL:0000784;6.80e-17;3!CL:0000623;3.36e-16;3!CL:0000771;1.54e-12;2!CL:0000451;2.42e-12;10!CL:0001014;2.69e-12;2!CL:0001016;2.69e-12;2!CL:0000840;5.78e-09;5!CL:0000767;4.23e-08;3!CL:0002032;6.06e-07;1!CL:0000557;6.06e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,2.39e-33,8;CL:0000081,5.18e-24,11;CL:0000037,6.70e-19,168;CL:0000775,9.57e-18,3;CL:0000988,1.21e-17,177;CL:0000784,6.14e-17,3;CL:0000623,1.53e-16,3;CL:0000825,1.53e-16,3;CL:0002032,3.39e-15,161;CL:0000837,3.39e-15,161;CL:0000738,3.44e-14,136;CL:0000763,1.69e-13,108;CL:0000049,1.69e-13,108;CL:0000771,1.55e-12,2;CL:0000451,2.32e-12,10;CL:0001014,2.70e-12,2;CL:0001016,2.70e-12,2;CL:0000840,5.79e-09,5;CL:0001029,5.79e-09,5;CL:0000134,5.94e-09,354;CL:0002320,1.19e-08,361;CL:0000767,5.84e-08,3;CL:0000219,1.35e-07,386;CL:0000034,2.68e-07,441;CL:0000766,6.95e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;7.17e-07;1!DOID:0060061;7.17e-07;1!DOID:8691;7.17e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,6.43e-07,1;DOID:0060061,6.43e-07,1;DOID:8691,6.43e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002384!4.30e-20!375;UBERON:0002390!1.50e-13!102;UBERON:0003061!1.50e-13!102;UBERON:0002193!1.33e-11!112;UBERON:0002371!1.23e-08!80;UBERON:0001474!3.87e-08!86;UBERON:0004765!4.50e-08!101;UBERON:0001434!4.50e-08!101;UBERON:0000178!4.37e-07!15;UBERON:0000179!4.37e-07!15;UBERON:0000463!4.37e-07!15 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.04e-08,371 | |||
|phase1_expression=0.54503513781167,1.49870366723688,0.563817616383885,0,0.446961094427288,0.872338524100369,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.328402357799783,0,2.36018566109342,0.767658796194425,1.08371286321253,0,0,0,0.232401601740905,0.284338464974843,0.293600439334847,1.10799081706375,0.601633342410425,0.217010870715852,0,0,0.257575567634187,0.290796477559129,0,0.727752183563449,0.697287110717054,0,0.309706370895104,0.28769239232215,0.512321413058201,0,0.689491361473237,0,0,0.188242339542605,0,0.449446968890169,0,0,1.27867425159808,0.659702600373432,0.398927315243264,0.426224750532694,0,0,0,0.251248665256743,0.521482918420201,0.217188844705117,0,0,0.316462387440884,0.422510572623884,0.850417199860174,0,1.12328631146495,0.901061357049038,0.16072558669708,0.285012743741249,0.19891667719909,0,0,0,0,0,0.400395987036012,0,0,0,1.1384259382189,0,0,2.64342657158052,1.12101712596307,0.263384084775077,0,0,0.822405995998037,0,0.977766799900771,0.946895611469467,0,0.891283655081389,0.589211814949674,0.443067789167242,0,0.128091319725675,0.130059347559878,0.657751618414705,0.552700035571697,0.289803085735052,0.14828656316206,0,0,0,0.383220493601921,0.34362744548263,0.506039384039006,0,0.651083453856419,0,0,0,0,0.236777252044017,0,0.604820229674197,0.267440195783507,0.434473211648397,0,0,0,0,0,0.144846518960824,0.795285947051099,0,0.189069634328136,0,0,0,0,0,0.324547393654683,0.348259474598534,0.398873881556595,2.38490624305342,2.28797964312051,1.48583000531826,0.198762407366705,0.860234595106124,0.347140501607594,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0,61.9367961949497,42.6558290563158,0,0,0.12663051166458,0.397227542439656,0,0,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0.554128230968366,0.438977620880838,0.30648779579902,0.150238058906597,0,0,0.213557388818567,0,0.300091096084402,0.103052529238439,0.772921620136887,0.37223371266318,0,0.0974370051611986,0,0.276149695926898,0.161646056818812,0,0.201504196455281,0.169560592310488,0.386521706326594,0,0,0,0.132529768321485,0,0,0,0,1.56449532329816,0,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.100528972411631,0.0925884451585296,0.325808305310325,0,0,0,0,0,0,0,0,0.858486162094873,0.984868024349589,0.936017060556951,0.148631162288728,0,0,0,0.0895585227028483,0,0,0.492663237895943,0.088048434013226,0.207328115540772,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0.285955987316295,0,0.823240336780769,0,0,0,1.50719688529793,0,0.099972991182057,0,0.502257091432126,0,0.239624855491583,0,0,0,0,0.179060963239896,0.224170287987055,1.18218456121156,1.50939302401662,1.66845947163673,0,0,0,0,0,18.7251755986796,17.9496875522415,20.3063601583657,0,0,0.271265023699736,0.415941723061614,0,0.157702415033935,0.117141414992713,0.300946099727719,0,0,0,0,0.0868836144680828,0,0,0.620304078368662,0.647142602455851,1.38745825144478,0,0,0.30239029332968,0.248107807818777,0.306923946576125,0,0.512556597022804,0,0.321707842287215,1.48418066444991,0,0,0.0821271560138091,0,0.348631135379878,0,0,0.184161977871793,0.114814448164607,0,0.131124414959424,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0.322260734604821,0,0,0,0,0,0.255225424989168,0.10115778085555,0,0,0.6970372701606,0,0,0,0.18532421910392,0,0,0.316379424718726,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0.243713489631284,0,0.272999822815972,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.0962221127255121,0,0,0,0,0,0,0.229723400206959,1.01489521846434,0.764637207142375,1.70894156152249,0,0.411362273086194,0.648473311192717,0,0.79312517629427,0,0,0,0,0,0,0,0.997896857164083,1.34053759092657,0.846694330895531,0,1.12318871245384,0.684704037099577,0,0,0.50787533340481,0.642352300414798,1.00899853595524,0,0.343505344755765,0,0,0.166849141711909,0.19538809540204,0,0,0.270455678475983,0,0,0,0.293016358543788,0,0.111443384277478,0,0.23874448473769,0,0,0,0,0,0.16480387422676,0,0,0.276283915531148,0,0,0.246169610922139,0,0,0,1.02314474045374,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0.0769502585037971,0.227884111694002,0,0,0,0,0.0915975934018623,0.533034776018635,0,1.2558420511602,0.166211681900156,0,0,0,0,0.158936578980379,0,0,0,0,0,0.0884575645033392,0,0.593042257361244,0.494255755786011,0.730953646538188,0,0,0,0.182454789215666,0,0,0.789168805698781,0,0,0.063186579628488,0.300646838828985,0.103688191397247,0,0,0,0,0,0,0.173559738335131,0,0.0870592065804026,0,0.171986032471617,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0.640358984218058,0,0,0,0,0,0.124252535565433,0,0,0.104602846312333,0.305994652908965,0,0,0,5.10986352267889,0,1.8402114799552,0.279282401272254,0,0,0,0,0,0,1.08089965062721,0,0,0.164831716762333,0.0674035438541849,0,0,0,0,0,0,0,9.67387733671452,9.2856234546954,0,0,0,0,0,0.179287339332845,0.191915197319445,0,0,0,0,0,0.326587360109409,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0.1251909307065,0,0,0,0,0.124980407962107,0.151649117541648,0.285465333544967,0.235265819698172,0,0,0.149254802886874,0.934853239388898,0,0.757612021100357,0.50313580350515,0,0.457680136793847,0,0.15543720058278,0.295710299979268,0.159296767163702,0,0.465788870628778,0,0.53168342911599,0,0.300515217994437,0.380805212168795,0.406870733204662,0.545545977607678,0.214821114084977,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0.883445729729405,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,2.79982354196902,0.213383459388282,0,0.567515953566836,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0.0788617450012534,0,0.352675943690684,0,0,0,0,0,0,0,0.161475645631851,0,0.0981477185010256,0,0,0,0,0,0.198916222116275,0,0.20170506870352,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0.47775168788705,0,0,0,0.173858272302579,0,0,0.3414369541879,0.691259661814092,0,0,0,0,0.22910686854405,0,0,0.111855431797792,0,0,0,0.102662806856247,0,0,0,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0,0,0,0,0,0.169927114687817,0,0.0644578879735772,0.599646935549574,0,0,0,0,0,0,0,0,0,0,0.743990036333503,0.462175628631418,0,0,0,0.126698501011437,0.407955318967927,0,0.735159196278759,0,0.0757786982182394,0,0,0,0,0,0,0,0,0.318235791390825,0,0,0,0.0673520530145875,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p13@RRM2B | |||
}} |
Latest revision as of 22:06, 24 September 2015
Short description: | p13@RRM2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_RRM2B_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 161bp_to_ENST00000535248, uc003yko.2_5end |
EntrezGene: | RRM2B |
HGNC: | 17296 |
UniProt: | B4E2N4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 2.39e-33 | 8 |
blood cell | 5.18e-24 | 11 |
hematopoietic stem cell | 6.70e-19 | 168 |
neutrophil | 9.57e-18 | 3 |
hematopoietic cell | 1.21e-17 | 177 |
plasmacytoid dendritic cell | 6.14e-17 | 3 |
natural killer cell | 1.53e-16 | 3 |
pro-NK cell | 1.53e-16 | 3 |
hematopoietic oligopotent progenitor cell | 3.39e-15 | 161 |
hematopoietic multipotent progenitor cell | 3.39e-15 | 161 |
leukocyte | 3.44e-14 | 136 |
myeloid cell | 1.69e-13 | 108 |
common myeloid progenitor | 1.69e-13 | 108 |
eosinophil | 1.55e-12 | 2 |
dendritic cell | 2.32e-12 | 10 |
CD1a-positive Langerhans cell | 2.70e-12 | 2 |
immature CD1a-positive Langerhans cell | 2.70e-12 | 2 |
immature conventional dendritic cell | 5.79e-09 | 5 |
common dendritic progenitor | 5.79e-09 | 5 |
mesenchymal cell | 5.94e-09 | 354 |
connective tissue cell | 1.19e-08 | 361 |
basophil | 5.84e-08 | 3 |
motile cell | 1.35e-07 | 386 |
stem cell | 2.68e-07 | 441 |
myeloid leukocyte | 6.95e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.04e-08 | 371 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 6.43e-07 | 1 |
cutaneous T cell lymphoma | 6.43e-07 | 1 |
mycosis fungoides | 6.43e-07 | 1 |