FFCP PHASE1:Hg19::chr18:9614515..9614583,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9989 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9320 | |||
|TSSclassifier=strong | |||
|UniProt=Q8TF05 | |||
|association_with_transcript=0bp_to_ENST00000400555,ENST00000400556_5end | |||
|cluster_id=chr18:9614515..9614583,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_PPP4R1_5end | |||
|id=chr18:9614515..9614583,- | |||
|ontology_enrichment_celltype=CL:0000220!1.51e-07!246;CL:0000057!2.94e-07!75;CL:0002321!4.94e-07!248 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.24e-07,76;CL:0002321,6.50e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!8.65e-14!95;UBERON:0000467!1.64e-12!625;UBERON:0000480!3.23e-12!626;UBERON:0000468!3.42e-11!659;UBERON:0004535!5.58e-10!110;UBERON:0001009!8.80e-10!113;UBERON:0004119!2.50e-09!169;UBERON:0000925!2.50e-09!169;UBERON:0006595!2.50e-09!169;UBERON:0000926!5.95e-09!448;UBERON:0004120!5.95e-09!448;UBERON:0006603!5.95e-09!448;UBERON:0004872!7.09e-09!84;UBERON:0000165!5.34e-08!28;UBERON:0000930!5.34e-08!28;UBERON:0002097!1.15e-07!40;UBERON:0002050!1.48e-07!605;UBERON:0005423!1.48e-07!605;UBERON:0001981!1.76e-07!60;UBERON:0007500!1.76e-07!60;UBERON:0004537!1.76e-07!60;UBERON:0006965!1.76e-07!60;UBERON:0000923!2.38e-07!604;UBERON:0005291!2.38e-07!604;UBERON:0006598!2.38e-07!604;UBERON:0002532!2.38e-07!604;UBERON:0001007!3.97e-07!155;UBERON:0001555!3.97e-07!155;UBERON:0007026!3.97e-07!155;UBERON:0000914!6.16e-07!83;UBERON:0002329!6.16e-07!83;UBERON:0003077!6.16e-07!83;UBERON:0003059!6.16e-07!83;UBERON:0007282!6.16e-07!83;UBERON:0009618!6.16e-07!83;UBERON:0007285!6.16e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;5.66e-08;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.91e-15,99;UBERON:0004535,5.09e-10,109;UBERON:0001009,8.08e-10,112;UBERON:0004872,6.30e-09,83;UBERON:0004923,1.69e-08,66;UBERON:0004119,3.18e-08,160;UBERON:0000925,3.18e-08,160;UBERON:0006595,3.18e-08,160;UBERON:0000165,8.66e-08,29;UBERON:0000930,8.66e-08,29;UBERON:0002050,1.01e-07,564;UBERON:0007500,1.52e-07,59;UBERON:0001981,1.52e-07,59;UBERON:0004537,1.52e-07,59;UBERON:0006965,1.52e-07,59;UBERON:0002097,2.27e-07,41;UBERON:0000490,3.71e-07,148;UBERON:0005423,5.58e-07,581;UBERON:0000923,9.83e-07,560;UBERON:0010316,9.83e-07,560;UBERON:0005291,9.83e-07,560;UBERON:0006598,9.83e-07,560;UBERON:0010317,9.83e-07,560;UBERON:0002532,9.83e-07,560 | |||
|phase1_expression=18.7128730648673,12.846031433459,19.8745709775319,26.0190575718139,9.83314407740033,13.0850778615055,17.7309914717817,13.8978372153903,7.31319758959548,10.3208253330634,12.5604210235037,17.2568683982836,21.1013582582763,21.5353454150481,22.5350215494983,8.74022690387308,15.0673632005994,14.6062018077475,11.7103871709722,8.37223194922158,14.484049078342,5.01527554364941,22.0401710090914,24.5005220880463,22.5976751270645,2.9801228241701,3.53032534634767,3.30585281517453,31.8625064247612,28.4033754591937,19.1971992911934,36.7768489791571,69.5785672377758,71.36252396219,10.1482032760195,15.2121078761541,9.9824149373848,18.8358438900838,23.8647892489469,22.7861414251644,16.3458296195145,14.5752149708541,24.2121033576135,27.9164618456764,24.5619363397726,33.4766004439186,19.2916100631718,19.7360586250476,19.2017949954964,20.4261598548727,13.0641960329841,19.8645073106412,18.961012440514,13.5551783552603,32.502356782642,18.2595069356327,15.2827444032394,21.348731022283,19.2832852193669,17.3301674621091,15.344091019177,32.6552787184849,22.5393933112444,31.9668562899521,13.3496249769149,10.7803192691317,9.34233373493363,20.0998932205395,16.6874533894464,19.3298071787554,14.5295880632009,12.1531619875896,12.3420331101945,11.8302960334687,12.7562579979026,13.6278119580444,25.2739420079614,19.2226422837128,22.3408565508941,13.1105862120974,14.7198341127327,17.3530946076402,8.79981222306614,14.1996038928154,12.4531295540898,5.54749289336459,11.6114836240444,12.0698012390441,8.59358334620321,11.4486450544244,18.7840279806118,27.0129107110632,25.2300330562651,14.5388461436928,16.8152568894461,12.6424360692037,7.86839080455332,11.7903228824749,12.3360899399706,8.69369776031526,5.86660079940463,4.73447805734733,3.89653456815823,10.6954038609767,12.0788422064683,11.7412964129319,12.7277815969557,15.1147757276297,12.0955193230687,8.55077103939116,10.2249506580764,6.95527405764126,5.04174314751005,6.68852070224283,5.22677619024884,13.7104304664055,7.2811893784365,11.6833331464094,13.1570239850141,7.32700452945422,8.46408490013344,6.65316431113862,10.9919836926774,12.0307414485153,13.742379920758,10.6549763419808,13.9591759476578,12.4996180799334,14.9766509638764,8.54463982908514,12.1903433156981,19.4503249314054,20.3301473331213,15.5418835525363,19.5521785147997,15.643424047769,37.3784395114017,12.6525066278685,14.2747573917742,15.9645166173046,18.5331397812496,17.0927693524515,17.8504691263346,26.3256954376945,17.2010118636982,18.9801413656201,13.6946699334431,10.493587469435,11.4398982156026,14.1153850505235,30.2118859197392,33.5491492091389,15.9684630739493,37.8756321089086,27.6869627898538,19.2582629358047,24.0344211517332,25.5832591577636,25.9709371761298,34.1415025019964,24.572588343658,21.2876189601184,18.7927784312091,22.0597848207521,17.8231228533987,26.2541201155195,24.4737016162525,27.251978276964,36.795992991812,27.5287041274757,25.4650424063266,181.856976061767,155.11210565933,23.5490788156969,25.3455695364612,25.7059938679097,32.9698860224915,35.2809043521041,26.9547970470751,29.1552352074,19.2148192313469,16.2800581955326,27.3865711151794,28.5586624787739,26.6442902074938,12.5626664945293,15.55674996096,10.0758215688533,14.9836836878554,22.818872861778,17.9338416662161,31.0027076419539,36.7451583715659,40.5902831369498,29.8065090032144,31.1999165971891,27.7946351362809,30.8880742893334,29.9192984427054,9.10161361938026,2.87447256726495,33.6672227908132,39.0369782000528,48.486220209732,47.4095830551305,28.5033650093088,28.5452311922534,24.6147837457246,38.0306027660387,24.3455423253167,26.2795557437857,33.9102938575375,26.999762660471,31.4321458855668,26.0563598864226,27.0042131586026,25.041310326428,33.5736919744672,24.9455225320631,19.3975268182574,25.5606906611962,25.8932892445035,25.4340888465731,76.7245587058288,70.0957529918445,65.1046431533039,7.31842236777572,7.42166702600317,5.57730925773688,7.04895174104519,7.56962552626885,4.74470566798579,37.5478877591558,18.6539872075937,29.0083334840209,23.6827643296309,14.4375896333917,13.4869752045422,12.3066823757014,13.496617673475,14.6690983734084,14.3800433100988,18.0325670524433,11.460661193614,13.7355025587742,9.23393176671337,9.59602091012043,7.01208869017229,11.5240723172792,7.3504355692771,7.60530208930985,27.5191620669735,15.9513274803979,9.27072508770766,29.5172252503473,15.7842385474644,49.826629575516,25.8524032492525,54.6877609919272,68.6080378624704,5.86454949558584,9.35941306751621,15.8764476227801,14.0275790019843,13.3845911428837,16.4577750447624,15.7415074276048,15.9813487877063,11.8530659693891,10.3018339451385,16.0041053956808,15.9122900294682,17.8357394746474,46.8669169933885,64.3371551001632,59.9708661335295,33.5844460135681,35.1667065601894,39.4884159540168,14.2872338989824,3.60998579454227,10.1590776614978,9.36779697210249,8.45824303956746,17.2079293531778,12.9876064689814,5.86087236050235,11.9750712215894,17.3778462668617,9.91132090884928,9.71809870943966,14.913434217933,14.3866822714982,24.7150023216602,17.9687684903311,3.57656445851882,20.287266061344,14.6265964121679,26.0018592278415,10.0310875962235,8.5109479213967,15.4524863829338,19.0160731565336,4.88359444852299,10.70212437815,21.1728519790928,17.7695974371273,13.4631818398683,19.8949988859327,19.1737360892065,20.1945442187755,10.9461402577071,11.0496560115068,12.6500363689819,23.0039861271919,14.9320516584348,21.3955357561078,20.2693829334611,18.0819163844337,20.9501326990678,18.9423893349061,15.7624608161542,14.2314199407281,11.1658441563381,16.5161505744601,19.5209780786433,13.9191986299985,14.7414313494227,15.3105300396759,185.753741938901,173.513646338334,213.838404932994,19.262564199905,13.0044335475516,18.9885516589815,20.7970861530807,23.7310555100225,20.5013139544115,23.3111415835499,27.0851489754947,18.1926003244788,10.3473071292505,28.5617007370238,32.0802353262563,22.7635069906377,2.93701736194111,4.46086450954113,20.0564985339201,18.1199928687638,15.368768323696,12.4282304292966,28.2940247167845,15.7242952531434,20.5929480489585,22.4054481000571,16.8396056659844,19.4771506868665,22.0034117098682,15.9245381932171,16.325987308949,23.9025025394116,15.2703083769289,21.4351877196042,25.4434670299974,21.8475511504723,17.5246201907852,45.9159816994522,44.7513606228456,27.0962097668472,21.6688489927993,17.7017960195223,7.21919380651859,19.5618956245213,9.41219723012226,7.30696123266303,19.6326029740749,9.09867072567173,14.4579649485038,24.3984985195417,6.16909010761157,7.58650025122788,4.51520796469368,19.1157204783779,10.8039881160734,12.0892367549976,15.5674512418614,12.2874661981703,12.8225062558195,8.20036614249264,13.3405141812364,20.402120306249,13.6438502579332,12.4589344880088,59.7236159516019,49.4045786987756,22.4957501781823,19.044131503548,21.2587091618209,17.4994189187788,20.6754858726796,18.9059630968162,19.7222703723351,19.1759911686227,14.3341577391247,44.957496978186,65.7290030388663,110.895447157794,48.2522614680973,31.6094973522154,33.9997334577091,25.7903789959422,21.2543170321501,20.2276291520468,24.358123778102,15.3819101856254,46.0862135309212,19.7243935760624,24.3612157033419,27.4507479250308,8.95642269589669,15.8337425572551,25.7744630820009,20.40866464518,24.6425266889141,21.4138883194123,21.9131068362977,15.1636861179987,26.9467545994114,29.9093503929677,7.31450608634386,23.8839219838659,20.0735278837835,19.9289870655659,16.4030301066307,22.6016233240486,26.465536490214,17.2494133562717,23.2378969184494,6.36653087693356,18.3650530573057,18.0590235496807,23.2367623574813,26.4793866380307,21.9419368872199,17.8813254643881,21.400263088875,13.8356814987533,14.9886421061342,16.4647446479951,10.62524886544,15.3971276907792,50.3241649554428,47.5914615630409,68.6013204626332,19.7701981631236,21.0947632608903,23.5860065934676,27.9360996728106,53.0661054478076,45.6702848308952,55.8185161213934,47.8503637226297,40.4994018278241,37.4339668508437,59.0110713185373,43.2025149790492,59.4843882220703,11.964295966277,16.3621575394771,26.4643433259514,10.2191746319145,14.282652084668,22.2673969680536,14.348364545594,6.58611925728295,8.6177416559565,6.77355464716425,11.3617679096094,11.2318871245384,9.35762184036088,11.1242725998846,15.038068625404,12.6968833351202,11.241165257259,11.0989838955076,13.6270796060904,8.93113896364988,11.9823898080299,6.71028323677248,9.34355193586688,10.3555690563081,12.2498716513907,18.4631098421569,8.11367035427949,10.9913749439281,5.63948020351398,26.7610972783754,22.2692432493279,5.94666556572616,4.1234052182667,13.3543988999014,36.7666506496043,20.1935982966194,37.4736056561063,3.97659059106519,11.253553312841,22.2617410045812,10.0530363278323,11.1896466307837,25.9022384726391,12.1564922833705,11.0850409055881,21.2718859604482,6.64657949489775,26.1273253635918,16.9851183668448,10.9202916552122,11.2545921449912,20.0246113442975,33.5276329285716,14.4478087188028,13.5706584453331,6.49376687132959,17.9652418201075,9.11497163798316,21.6900799990565,31.1749817436961,17.2966041393959,37.8837938936222,14.6560362696121,7.92909758455369,3.79085997398231,15.7998745389296,7.08593108651071,6.99459344027366,7.62908681585416,11.0579259931225,8.57088094965288,7.89787429754301,4.90223085835456,16.4520018248752,21.7769231565746,25.9787887331163,15.6783454983881,17.1437100822665,15.9711636725352,27.1150985772132,24.7313502185028,37.8454690973231,7.15353087370155,9.88975615288656,12.1334527787114,23.687544364804,30.3896928192496,24.8375948724247,39.0892689411821,7.15214605411704,7.38493225848095,28.0760430033734,19.082664643582,12.1177638255571,17.9147147594131,27.9525903830552,22.6081153625441,18.3843099781986,11.4914463220248,12.2173680921383,16.7828821121886,23.2747517716649,8.66778449183755,7.29819156862664,44.0245392597202,26.9486221282843,17.7562981282226,30.247679012166,15.3036380815245,19.9669591626022,21.3459255568579,19.286003599888,28.580116526409,18.2045575731524,16.0105788387685,23.8944859545918,13.3766486634003,15.9475873965109,11.1078232534484,24.8900689432519,38.1319324822163,17.123213487719,18.7464775394062,11.320490760823,11.4019334654449,12.9742422144071,36.1769031501804,5.91316048833052,13.7848251876125,14.3894020879088,12.9164497606943,9.18006541360241,26.9860908174028,24.8492342779755,18.9973165318024,13.786863061167,12.247685458099,13.515318347578,6.86379991447858,7.92301388934823,14.1647890544593,40.0679858848552,22.1523855899991,26.4645201170203,16.1157183865388,26.2945036810382,17.4121883725839,15.1964970570112,26.8267834940642,25.7859264851974,1.8402114799552,21.2254624966913,22.2285611291333,30.1506670322262,15.1756040379233,19.7443982142823,15.6220020209311,19.6847574386108,17.6546942935778,18.6393519243926,15.1263710029869,15.2469338005158,14.8287796479207,30.1188093435131,7.95929321418374,9.54275627771164,12.3945099561534,3.85807556316046,3.30094647833361,4.15440338029185,11.0237206860235,30.952078182318,10.9956697551025,22.4741240691508,14.6578615576509,15.6314672642294,15.9456508144304,8.96436696664224,33.9689899255418,20.7261644648276,25.8215868442518,17.0359920228682,15.203988849104,12.963322368019,13.0634944043764,22.7487363968726,15.022931297129,24.5358751371007,19.0364313753811,14.5086711341302,13.2506888912221,16.2896525015554,12.2976319620702,13.1736865170934,19.0300056025501,30.2208377566576,34.8993557321258,42.2523836454139,15.3811466761705,7.50924201212188,11.9356746413278,20.4269202486458,7.61624924717264,11.0303553369988,12.2538230705385,15.082141012651,12.093165411268,5.31640907980192,7.44360215901975,16.9007756453775,16.055457479322,14.3098476482539,13.7233050500457,10.6528448900898,20.9967085376339,7.43080675954074,11.1331480082537,19.2917972152501,12.6450424567858,10.1444720027578,20.4479079955017,13.3216586612918,17.7537875680836,17.8038824958584,18.6160247296906,19.5758468751238,18.078365403357,20.1137128605108,18.9633384710992,20.8475761485384,23.575921540228,15.2933058135626,22.8236546608101,18.2470731449976,19.9381285918496,13.5653716071051,24.3417326575494,20.1826762449462,24.4122439922797,23.6403256963327,24.2747858916024,22.7376542340462,13.5352602157529,25.6017769384418,16.4829938487741,16.1639754607641,25.2369796457302,14.2538674501404,21.2297175461176,7.30784017502592,18.3631799664941,13.89134845943,32.0605082903473,20.2370390422081,7.72003617902431,19.9548485116623,24.7364804324233,27.7796215110117,26.5239631825324,6.66227948328662,12.090061960592,10.9389584223858,12.1667423813523,14.6145231629541,15.5451863166635,14.5573200887701,8.51785607000673,7.12741435385786,43.1076731651599,9.79938239689156,10.1357143209434,13.4327684135436,18.1605105141387,24.1178794829911,42.2436113312722,44.1674854623411,9.59207784777388,3.66604358748718,7.86329709279482,7.42625539705695,14.0877999861841,6.58982252315217,7.43614585554013,6.70373901567893,28.9383959094611,19.7154362503133,8.0057074828547,16.9284452971528,18.0684831638388,9.95552988995123,12.7526918693026,17.4000906372295,8.61488729811171,22.6864526599546,8.99044282034832,9.36558744664736,38.5477434699717,9.02959010209436,17.3415493321178,33.5674335294673,13.9786056041909,27.0781287781689,11.0457588169616,3.58049199809294,12.860966147723,11.2954838473971,23.4454203369928,26.4525761426237,16.86850750354,13.7506160181852,10.1306376927592,3.90539049306924,12.401207790071,10.9709351635459,24.0668915968017,12.6099286377152,17.3673912436253,21.1045493231545,29.0020710741881,8.0355275381743,9.41594422212707,14.5671745016792,11.1554473762136,27.6751394907433,9.56442096712968,25.8946894250502,9.31185341782594,9.33973384592457,36.4037029922622,28.8089330900459,17.1899873342626,6.75597036638808,5.0448989396482,25.5684441742659,15.3308589765221,17.6768124518209,14.2238322911546,7.90068058663633,8.83434832797752,12.8655121503909,28.8616091302891,32.9473701019229,30.3878889227231,29.7241654580059,9.89522925286638,16.8031441037403,18.8321624517739,15.6653208570644,22.681579985861,18.3021767541949,19.1107787795487,12.4159529295549,9.71687312790905,9.14384437367021,14.8908632553216,10.9849203336184,23.196288626764,30.1140815696666,7.48606283078738,19.6961267409755,15.6974519826391,14.5700445830258,16.6010180285598,12.3789531724672,30.3294441364223,26.8828259419867,6.1141248526998,22.0633489578515,14.3762693731992,18.4529959088049,16.9316448186439,10.9890489171684,32.456078905373,16.8231213183938,21.1421872553333,16.3903495716883,81.4205960041799,26.4671153786769,11.3140327031727,44.5505196830375,15.1380663523498,13.1872416499335,16.7237855924776,9.04286819539166,17.8903783039555,19.5739930990698,24.1796761808388,14.7896201162054,18.6029421713229,11.9858103593325,5.46327859818478,5.8281310465261,9.58694999574628,6.94765253690457,16.4491870167372,6.76910356089413,18.9446745545599,16.6137760696831,14.0958804707992,14.790918408251,29.2130555204344,27.1393451868664,8.65491391802482,14.8979314310059,20.4079989896716,12.5384901807985,25.0625314308192,34.3992461677199,31.4854636998459,30.2410718035498,29.5495486217827,25.282187097497,21.2462531074643,36.9276616736895,38.614456457388,12.3060526886024,23.4640942403454,24.0815645040247,27.2620439471545,19.3069464513799,15.095534519327,9.29648627679376 | |||
|short_description=p1@PPP4R1 | |||
}} |
Latest revision as of 22:11, 24 September 2015
Short description: | p1@PPP4R1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPP4R1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000400555, ENST00000400556_5end |
EntrezGene: | PPP4R1 |
HGNC: | 9320 |
UniProt: | Q8TF05 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.24e-07 | 76 |
embryonic cell | 6.50e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.91e-15 | 99 |
cardiovascular system | 5.09e-10 | 109 |
circulatory system | 8.08e-10 | 112 |
splanchnic layer of lateral plate mesoderm | 6.30e-09 | 83 |
organ component layer | 1.69e-08 | 66 |
endoderm-derived structure | 3.18e-08 | 160 |
endoderm | 3.18e-08 | 160 |
presumptive endoderm | 3.18e-08 | 160 |
mouth | 8.66e-08 | 29 |
stomodeum | 8.66e-08 | 29 |
embryonic structure | 1.01e-07 | 564 |
epithelial tube open at both ends | 1.52e-07 | 59 |
blood vessel | 1.52e-07 | 59 |
blood vasculature | 1.52e-07 | 59 |
vascular cord | 1.52e-07 | 59 |
skin of body | 2.27e-07 | 41 |
unilaminar epithelium | 3.71e-07 | 148 |
developing anatomical structure | 5.58e-07 | 581 |
germ layer | 9.83e-07 | 560 |
germ layer / neural crest | 9.83e-07 | 560 |
embryonic tissue | 9.83e-07 | 560 |
presumptive structure | 9.83e-07 | 560 |
germ layer / neural crest derived structure | 9.83e-07 | 560 |
epiblast (generic) | 9.83e-07 | 560 |